data_2Z76
#
_model_server_result.job_id            EC80XEUJ6lS6YAOVdUECdA 
_model_server_result.datetime_utc      '2024-11-06 01:30:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2z76 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":500}' 
#
_entry.id    2Z76 
#
_exptl.entry_id    2Z76 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2Z76 
_cell.length_a            47.313 
_cell.length_b            80.12 
_cell.length_c            86.231 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2Z76 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I 1 1 
A,C,D,E,F,G,H 2 1 
B,I 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_555 -x,y+1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 40.06 43.1155 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 289 n n 
C1 H11 MPD sing 290 n n 
C1 H12 MPD sing 291 n n 
C1 H13 MPD sing 292 n n 
C2 O2 MPD sing 293 n n 
C2 CM MPD sing 294 n n 
C2 C3 MPD sing 295 n n 
O2 HO2 MPD sing 296 n n 
CM HM1 MPD sing 297 n n 
CM HM2 MPD sing 298 n n 
CM HM3 MPD sing 299 n n 
C3 C4 MPD sing 300 n n 
C3 H31 MPD sing 301 n n 
C3 H32 MPD sing 302 n n 
C4 O4 MPD sing 303 n n 
C4 C5 MPD sing 304 n n 
C4 H4 MPD sing 305 n n 
O4 HO4 MPD sing 306 n n 
C5 H51 MPD sing 307 n n 
C5 H52 MPD sing 308 n n 
C5 H53 MPD sing 309 n n 
#
_atom_sites.entry_id                     2Z76 
_atom_sites.fract_transf_matrix[1][1]    0.021136 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012481 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011597 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ACT A 1 200 200 ACT ACT . 
D 2 ACT A 1 300 300 ACT ACT . 
E 2 ACT A 1 400 400 ACT ACT . 
F 3 LDA A 1 800 800 LDA LDA . 
G 4 MPD A 1 500 500 MPD MPD . 
H 5 HOH A 1 167 167 HOH HOH . 
H 5 HOH A 2 801 801 HOH HOH . 
H 5 HOH A 3 802 802 HOH HOH . 
H 5 HOH A 4 803 803 HOH HOH . 
H 5 HOH A 5 804 804 HOH HOH . 
H 5 HOH A 6 805 805 HOH HOH . 
H 5 HOH A 7 806 806 HOH HOH . 
H 5 HOH A 8 807 807 HOH HOH . 
H 5 HOH A 9 808 808 HOH HOH . 
H 5 HOH A 10 809 809 HOH HOH . 
H 5 HOH A 11 810 810 HOH HOH . 
H 5 HOH A 12 811 811 HOH HOH . 
H 5 HOH A 13 812 812 HOH HOH . 
H 5 HOH A 14 813 813 HOH HOH . 
H 5 HOH A 15 814 814 HOH HOH . 
H 5 HOH A 16 815 815 HOH HOH . 
H 5 HOH A 17 816 816 HOH HOH . 
H 5 HOH A 18 817 817 HOH HOH . 
H 5 HOH A 19 818 818 HOH HOH . 
H 5 HOH A 20 819 819 HOH HOH . 
H 5 HOH A 21 820 820 HOH HOH . 
H 5 HOH A 22 821 821 HOH HOH . 
H 5 HOH A 23 822 822 HOH HOH . 
H 5 HOH A 24 823 823 HOH HOH . 
H 5 HOH A 25 824 824 HOH HOH . 
H 5 HOH A 26 825 825 HOH HOH . 
H 5 HOH A 27 826 826 HOH HOH . 
H 5 HOH A 28 827 827 HOH HOH . 
H 5 HOH A 29 828 828 HOH HOH . 
H 5 HOH A 30 829 829 HOH HOH . 
H 5 HOH A 31 830 830 HOH HOH . 
H 5 HOH A 32 831 831 HOH HOH . 
H 5 HOH A 33 832 832 HOH HOH . 
H 5 HOH A 34 833 833 HOH HOH . 
H 5 HOH A 35 834 834 HOH HOH . 
H 5 HOH A 36 835 835 HOH HOH . 
H 5 HOH A 37 836 836 HOH HOH . 
H 5 HOH A 38 837 837 HOH HOH . 
H 5 HOH A 39 838 838 HOH HOH . 
H 5 HOH A 40 839 839 HOH HOH . 
H 5 HOH A 41 840 840 HOH HOH . 
H 5 HOH A 42 841 841 HOH HOH . 
H 5 HOH A 43 842 842 HOH HOH . 
H 5 HOH A 44 843 843 HOH HOH . 
H 5 HOH A 45 844 844 HOH HOH . 
H 5 HOH A 46 845 845 HOH HOH . 
H 5 HOH A 47 846 846 HOH HOH . 
H 5 HOH A 48 847 847 HOH HOH . 
H 5 HOH A 49 848 848 HOH HOH . 
H 5 HOH A 50 849 849 HOH HOH . 
H 5 HOH A 51 850 850 HOH HOH . 
H 5 HOH A 52 851 851 HOH HOH . 
H 5 HOH A 53 852 852 HOH HOH . 
H 5 HOH A 54 853 853 HOH HOH . 
H 5 HOH A 55 854 854 HOH HOH . 
H 5 HOH A 56 855 855 HOH HOH . 
H 5 HOH A 57 856 856 HOH HOH . 
H 5 HOH A 58 857 857 HOH HOH . 
H 5 HOH A 59 858 858 HOH HOH . 
H 5 HOH A 60 859 859 HOH HOH . 
H 5 HOH A 61 860 860 HOH HOH . 
H 5 HOH A 62 861 861 HOH HOH . 
H 5 HOH A 63 862 862 HOH HOH . 
H 5 HOH A 64 863 863 HOH HOH . 
H 5 HOH A 65 864 864 HOH HOH . 
H 5 HOH A 66 865 865 HOH HOH . 
H 5 HOH A 67 866 866 HOH HOH . 
H 5 HOH A 68 867 867 HOH HOH . 
H 5 HOH A 69 868 868 HOH HOH . 
H 5 HOH A 70 869 869 HOH HOH . 
H 5 HOH A 71 870 870 HOH HOH . 
H 5 HOH A 72 871 871 HOH HOH . 
H 5 HOH A 73 872 872 HOH HOH . 
H 5 HOH A 74 873 873 HOH HOH . 
H 5 HOH A 75 874 874 HOH HOH . 
H 5 HOH A 76 875 875 HOH HOH . 
H 5 HOH A 77 876 876 HOH HOH . 
H 5 HOH A 78 877 877 HOH HOH . 
H 5 HOH A 79 878 878 HOH HOH . 
H 5 HOH A 80 879 879 HOH HOH . 
H 5 HOH A 81 880 880 HOH HOH . 
H 5 HOH A 82 881 881 HOH HOH . 
H 5 HOH A 83 882 882 HOH HOH . 
H 5 HOH A 84 883 883 HOH HOH . 
H 5 HOH A 85 884 884 HOH HOH . 
H 5 HOH A 86 885 885 HOH HOH . 
H 5 HOH A 87 886 886 HOH HOH . 
H 5 HOH A 88 887 887 HOH HOH . 
H 5 HOH A 89 888 888 HOH HOH . 
H 5 HOH A 90 889 889 HOH HOH . 
H 5 HOH A 91 890 890 HOH HOH . 
H 5 HOH A 92 891 891 HOH HOH . 
H 5 HOH A 93 892 892 HOH HOH . 
H 5 HOH A 94 893 893 HOH HOH . 
H 5 HOH A 95 894 894 HOH HOH . 
H 5 HOH A 96 895 895 HOH HOH . 
H 5 HOH A 97 896 896 HOH HOH . 
H 5 HOH A 98 897 897 HOH HOH . 
H 5 HOH A 99 898 898 HOH HOH . 
H 5 HOH A 100 899 899 HOH HOH . 
H 5 HOH A 101 900 900 HOH HOH . 
H 5 HOH A 102 901 901 HOH HOH . 
H 5 HOH A 103 902 902 HOH HOH . 
H 5 HOH A 104 903 903 HOH HOH . 
H 5 HOH A 105 904 904 HOH HOH . 
H 5 HOH A 106 905 905 HOH HOH . 
H 5 HOH A 107 907 907 HOH HOH . 
H 5 HOH A 108 908 908 HOH HOH . 
H 5 HOH A 109 909 909 HOH HOH . 
H 5 HOH A 110 910 910 HOH HOH . 
H 5 HOH A 111 911 911 HOH HOH . 
H 5 HOH A 112 912 912 HOH HOH . 
H 5 HOH A 113 913 913 HOH HOH . 
H 5 HOH A 114 914 914 HOH HOH . 
H 5 HOH A 115 915 915 HOH HOH . 
I 5 HOH B 1 140 140 HOH HOH . 
I 5 HOH B 2 141 141 HOH HOH . 
I 5 HOH B 3 142 142 HOH HOH . 
I 5 HOH B 4 143 143 HOH HOH . 
I 5 HOH B 5 144 144 HOH HOH . 
I 5 HOH B 6 145 145 HOH HOH . 
I 5 HOH B 7 146 146 HOH HOH . 
I 5 HOH B 8 147 147 HOH HOH . 
I 5 HOH B 9 148 148 HOH HOH . 
I 5 HOH B 10 149 149 HOH HOH . 
I 5 HOH B 11 150 150 HOH HOH . 
I 5 HOH B 12 151 151 HOH HOH . 
I 5 HOH B 13 152 152 HOH HOH . 
I 5 HOH B 14 153 153 HOH HOH . 
I 5 HOH B 15 154 154 HOH HOH . 
I 5 HOH B 16 155 155 HOH HOH . 
I 5 HOH B 17 156 156 HOH HOH . 
I 5 HOH B 18 157 157 HOH HOH . 
I 5 HOH B 19 158 158 HOH HOH . 
I 5 HOH B 20 159 159 HOH HOH . 
I 5 HOH B 21 160 160 HOH HOH . 
I 5 HOH B 22 161 161 HOH HOH . 
I 5 HOH B 23 162 162 HOH HOH . 
I 5 HOH B 24 163 163 HOH HOH . 
I 5 HOH B 25 164 164 HOH HOH . 
I 5 HOH B 26 165 165 HOH HOH . 
I 5 HOH B 27 166 166 HOH HOH . 
I 5 HOH B 28 168 168 HOH HOH . 
I 5 HOH B 29 169 169 HOH HOH . 
I 5 HOH B 30 170 170 HOH HOH . 
I 5 HOH B 31 171 171 HOH HOH . 
I 5 HOH B 32 172 172 HOH HOH . 
I 5 HOH B 33 173 173 HOH HOH . 
I 5 HOH B 34 174 174 HOH HOH . 
I 5 HOH B 35 175 175 HOH HOH . 
I 5 HOH B 36 176 176 HOH HOH . 
I 5 HOH B 37 177 177 HOH HOH . 
I 5 HOH B 38 178 178 HOH HOH . 
I 5 HOH B 39 179 179 HOH HOH . 
I 5 HOH B 40 180 180 HOH HOH . 
I 5 HOH B 41 181 181 HOH HOH . 
I 5 HOH B 42 182 182 HOH HOH . 
I 5 HOH B 43 183 183 HOH HOH . 
I 5 HOH B 44 184 184 HOH HOH . 
I 5 HOH B 45 185 185 HOH HOH . 
I 5 HOH B 46 186 186 HOH HOH . 
I 5 HOH B 47 187 187 HOH HOH . 
I 5 HOH B 48 188 188 HOH HOH . 
I 5 HOH B 49 189 189 HOH HOH . 
I 5 HOH B 50 190 190 HOH HOH . 
I 5 HOH B 51 191 191 HOH HOH . 
I 5 HOH B 52 192 192 HOH HOH . 
I 5 HOH B 53 193 193 HOH HOH . 
I 5 HOH B 54 194 194 HOH HOH . 
I 5 HOH B 55 195 195 HOH HOH . 
I 5 HOH B 56 196 196 HOH HOH . 
I 5 HOH B 57 197 197 HOH HOH . 
I 5 HOH B 58 198 198 HOH HOH . 
I 5 HOH B 59 199 199 HOH HOH . 
I 5 HOH B 60 200 200 HOH HOH . 
I 5 HOH B 61 201 201 HOH HOH . 
I 5 HOH B 62 202 202 HOH HOH . 
I 5 HOH B 63 203 203 HOH HOH . 
I 5 HOH B 64 204 204 HOH HOH . 
I 5 HOH B 65 205 205 HOH HOH . 
I 5 HOH B 66 206 206 HOH HOH . 
I 5 HOH B 67 207 207 HOH HOH . 
I 5 HOH B 68 208 208 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . G 4 5.178 32.739 6.65 1 53.7 ? C1 MPD 500 A 1 
HETATM 2 C C2 MPD . . . G 4 5.253 31.47 5.806 1 54.47 ? C2 MPD 500 A 1 
HETATM 3 O O2 MPD . . . G 4 4.577 30.402 6.523 1 54.84 ? O2 MPD 500 A 1 
HETATM 4 C CM MPD . . . G 4 4.568 31.667 4.454 1 53.77 ? CM MPD 500 A 1 
HETATM 5 C C3 MPD . . . G 4 6.732 31.166 5.62 1 55.94 ? C3 MPD 500 A 1 
HETATM 6 C C4 MPD . . . G 4 7.07 29.751 5.175 1 56.58 ? C4 MPD 500 A 1 
HETATM 7 O O4 MPD . . . G 4 8.066 29.789 4.165 1 56.85 ? O4 MPD 500 A 1 
HETATM 8 C C5 MPD . . . G 4 7.558 28.993 6.392 1 57.76 ? C5 MPD 500 A 1 
#
_model_server_stats.io_time_ms              54 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           8 
#