data_2Z7G
#
_model_server_result.job_id            4kGV8rGplf0BJysJv-unRw 
_model_server_result.datetime_utc      '2025-08-31 03:38:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2z7g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":356}' 
#
_entry.id    2Z7G 
#
_exptl.entry_id    2Z7G 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              277.365 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S,3R)-3-(6-amino-9H-purin-9-yl)nonan-2-ol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2Z7G 
_cell.length_a            77.1 
_cell.length_b            77.1 
_cell.length_c            135.66 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2Z7G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 14 A HIS 12 1_555 B ZN ZN . A ZN 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc2 A NE2 HIS 16 A HIS 14 1_555 B ZN ZN . A ZN 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc3 A NE2 HIS 213 A HIS 211 1_555 B ZN ZN . A ZN 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc4 A OD1 ASP 294 A ASP 292 1_555 B ZN ZN . A ZN 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc5 B ZN ZN . A ZN 355 1_555 D O HOH . A HOH 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
#
_chem_comp.formula           'C14 H23 N5 O' 
_chem_comp.formula_weight    277.365 
_chem_comp.id                EH9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S,3R)-3-(6-amino-9H-purin-9-yl)nonan-2-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Erythro-9-[3-(2-hydroxynonyl)] adenine;EHNA' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C34 C31 EH9 sing 83 n n 
C5 N6 EH9 doub 84 n y 
C5 N4 EH9 sing 85 n y 
C31 C30 EH9 sing 86 n n 
C30 C28 EH9 sing 87 n n 
N6 C1 EH9 sing 88 n y 
N4 C3 EH9 doub 89 n y 
C40 C36 EH9 sing 90 n n 
C28 C26 EH9 sing 91 n n 
C1 N24 EH9 sing 92 n n 
C1 C2 EH9 doub 93 n y 
C26 C21 EH9 sing 94 n n 
C3 C2 EH9 sing 95 n y 
C3 N13 EH9 sing 96 n y 
C2 N15 EH9 sing 97 n y 
C36 C20 EH9 sing 98 n n 
C36 O38 EH9 sing 99 n n 
C21 C20 EH9 sing 100 n n 
N13 C20 EH9 sing 101 n n 
N13 C14 EH9 sing 102 n y 
N15 C14 EH9 doub 103 n y 
C5 H5 EH9 sing 104 n n 
C14 H14 EH9 sing 105 n n 
C20 H20 EH9 sing 106 n n 
C21 H211 EH9 sing 107 n n 
C21 H212 EH9 sing 108 n n 
N24 H241 EH9 sing 109 n n 
N24 H242 EH9 sing 110 n n 
C26 H261 EH9 sing 111 n n 
C26 H262 EH9 sing 112 n n 
C28 H281 EH9 sing 113 n n 
C28 H282 EH9 sing 114 n n 
C30 H301 EH9 sing 115 n n 
C30 H302 EH9 sing 116 n n 
C31 H311 EH9 sing 117 n n 
C31 H312 EH9 sing 118 n n 
C34 H341 EH9 sing 119 n n 
C34 H342 EH9 sing 120 n n 
C34 H343 EH9 sing 121 n n 
C36 H36 EH9 sing 122 n n 
O38 HO38 EH9 sing 123 n n 
C40 H401 EH9 sing 124 n n 
C40 H402 EH9 sing 125 n n 
C40 H403 EH9 sing 126 n n 
#
_atom_sites.entry_id                     2Z7G 
_atom_sites.fract_transf_matrix[1][1]    0.01297 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01297 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007371 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 355 355 ZN ZN . 
C 3 EH9 A 1 356 356 EH9 EH9 . 
D 4 HOH A 1 357 357 HOH HOH . 
D 4 HOH A 2 358 358 HOH HOH . 
D 4 HOH A 3 359 359 HOH HOH . 
D 4 HOH A 4 360 360 HOH HOH . 
D 4 HOH A 5 361 361 HOH HOH . 
D 4 HOH A 6 362 362 HOH HOH . 
D 4 HOH A 7 363 363 HOH HOH . 
D 4 HOH A 8 364 364 HOH HOH . 
D 4 HOH A 9 365 365 HOH HOH . 
D 4 HOH A 10 366 366 HOH HOH . 
D 4 HOH A 11 367 367 HOH HOH . 
D 4 HOH A 12 368 368 HOH HOH . 
D 4 HOH A 13 369 369 HOH HOH . 
D 4 HOH A 14 370 370 HOH HOH . 
D 4 HOH A 15 371 371 HOH HOH . 
D 4 HOH A 16 372 372 HOH HOH . 
D 4 HOH A 17 373 373 HOH HOH . 
D 4 HOH A 18 374 374 HOH HOH . 
D 4 HOH A 19 375 375 HOH HOH . 
D 4 HOH A 20 376 376 HOH HOH . 
D 4 HOH A 21 377 377 HOH HOH . 
D 4 HOH A 22 378 378 HOH HOH . 
D 4 HOH A 23 379 379 HOH HOH . 
D 4 HOH A 24 380 380 HOH HOH . 
D 4 HOH A 25 381 381 HOH HOH . 
D 4 HOH A 26 382 382 HOH HOH . 
D 4 HOH A 27 383 383 HOH HOH . 
D 4 HOH A 28 384 384 HOH HOH . 
D 4 HOH A 29 385 385 HOH HOH . 
D 4 HOH A 30 386 386 HOH HOH . 
D 4 HOH A 31 387 387 HOH HOH . 
D 4 HOH A 32 388 388 HOH HOH . 
D 4 HOH A 33 389 389 HOH HOH . 
D 4 HOH A 34 390 390 HOH HOH . 
D 4 HOH A 35 391 391 HOH HOH . 
D 4 HOH A 36 392 392 HOH HOH . 
D 4 HOH A 37 393 393 HOH HOH . 
D 4 HOH A 38 394 394 HOH HOH . 
D 4 HOH A 39 395 395 HOH HOH . 
D 4 HOH A 40 396 396 HOH HOH . 
D 4 HOH A 41 397 397 HOH HOH . 
D 4 HOH A 42 398 398 HOH HOH . 
D 4 HOH A 43 399 399 HOH HOH . 
D 4 HOH A 44 400 400 HOH HOH . 
D 4 HOH A 45 401 401 HOH HOH . 
D 4 HOH A 46 402 402 HOH HOH . 
D 4 HOH A 47 403 403 HOH HOH . 
D 4 HOH A 48 404 404 HOH HOH . 
D 4 HOH A 49 405 405 HOH HOH . 
D 4 HOH A 50 406 406 HOH HOH . 
D 4 HOH A 51 407 407 HOH HOH . 
D 4 HOH A 52 408 408 HOH HOH . 
D 4 HOH A 53 409 409 HOH HOH . 
D 4 HOH A 54 410 410 HOH HOH . 
D 4 HOH A 55 411 411 HOH HOH . 
D 4 HOH A 56 412 412 HOH HOH . 
D 4 HOH A 57 413 413 HOH HOH . 
D 4 HOH A 58 414 414 HOH HOH . 
D 4 HOH A 59 415 415 HOH HOH . 
D 4 HOH A 60 416 416 HOH HOH . 
D 4 HOH A 61 417 417 HOH HOH . 
D 4 HOH A 62 418 418 HOH HOH . 
D 4 HOH A 63 419 419 HOH HOH . 
D 4 HOH A 64 420 420 HOH HOH . 
D 4 HOH A 65 421 421 HOH HOH . 
D 4 HOH A 66 422 422 HOH HOH . 
D 4 HOH A 67 423 423 HOH HOH . 
D 4 HOH A 68 424 424 HOH HOH . 
D 4 HOH A 69 425 425 HOH HOH . 
D 4 HOH A 70 426 426 HOH HOH . 
D 4 HOH A 71 427 427 HOH HOH . 
D 4 HOH A 72 428 428 HOH HOH . 
D 4 HOH A 73 429 429 HOH HOH . 
D 4 HOH A 74 430 430 HOH HOH . 
D 4 HOH A 75 431 431 HOH HOH . 
D 4 HOH A 76 432 432 HOH HOH . 
D 4 HOH A 77 433 433 HOH HOH . 
D 4 HOH A 78 434 434 HOH HOH . 
D 4 HOH A 79 435 435 HOH HOH . 
D 4 HOH A 80 436 436 HOH HOH . 
D 4 HOH A 81 437 437 HOH HOH . 
D 4 HOH A 82 438 438 HOH HOH . 
D 4 HOH A 83 439 439 HOH HOH . 
D 4 HOH A 84 440 440 HOH HOH . 
D 4 HOH A 85 441 441 HOH HOH . 
D 4 HOH A 86 442 442 HOH HOH . 
D 4 HOH A 87 443 443 HOH HOH . 
D 4 HOH A 88 444 444 HOH HOH . 
D 4 HOH A 89 445 445 HOH HOH . 
D 4 HOH A 90 446 446 HOH HOH . 
D 4 HOH A 91 447 447 HOH HOH . 
D 4 HOH A 92 448 448 HOH HOH . 
D 4 HOH A 93 449 449 HOH HOH . 
D 4 HOH A 94 450 450 HOH HOH . 
D 4 HOH A 95 451 451 HOH HOH . 
D 4 HOH A 96 452 452 HOH HOH . 
D 4 HOH A 97 453 453 HOH HOH . 
D 4 HOH A 98 454 454 HOH HOH . 
D 4 HOH A 99 455 455 HOH HOH . 
D 4 HOH A 100 456 456 HOH HOH . 
D 4 HOH A 101 457 457 HOH HOH . 
D 4 HOH A 102 458 458 HOH HOH . 
D 4 HOH A 103 459 459 HOH HOH . 
D 4 HOH A 104 460 460 HOH HOH . 
D 4 HOH A 105 461 461 HOH HOH . 
D 4 HOH A 106 462 462 HOH HOH . 
D 4 HOH A 107 463 463 HOH HOH . 
D 4 HOH A 108 464 464 HOH HOH . 
D 4 HOH A 109 465 465 HOH HOH . 
D 4 HOH A 110 466 466 HOH HOH . 
D 4 HOH A 111 467 467 HOH HOH . 
D 4 HOH A 112 468 468 HOH HOH . 
D 4 HOH A 113 469 469 HOH HOH . 
D 4 HOH A 114 470 470 HOH HOH . 
D 4 HOH A 115 471 471 HOH HOH . 
D 4 HOH A 116 472 472 HOH HOH . 
D 4 HOH A 117 473 473 HOH HOH . 
D 4 HOH A 118 474 474 HOH HOH . 
D 4 HOH A 119 475 475 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EH9 . . . C 3 11.128 12.493 20.806 1 33.14 ? C1 EH9 356 A 1 
HETATM 2 C C2 EH9 . . . C 3 11.289 13.541 21.669 1 30.35 ? C2 EH9 356 A 1 
HETATM 3 C C3 EH9 . . . C 3 11.317 14.844 21.158 1 31.64 ? C3 EH9 356 A 1 
HETATM 4 C C5 EH9 . . . C 3 11.03 14.077 19.018 1 33.26 ? C5 EH9 356 A 1 
HETATM 5 C C14 EH9 . . . C 3 11.514 14.878 23.339 1 29.61 ? C14 EH9 356 A 1 
HETATM 6 N N4 EH9 . . . C 3 11.189 15.142 19.832 1 31.69 ? N4 EH9 356 A 1 
HETATM 7 N N6 EH9 . . . C 3 10.999 12.805 19.473 1 35.7 ? N6 EH9 356 A 1 
HETATM 8 N N13 EH9 . . . C 3 11.492 15.666 22.235 1 31.85 ? N13 EH9 356 A 1 
HETATM 9 N N15 EH9 . . . C 3 11.429 13.578 22.982 1 31.23 ? N15 EH9 356 A 1 
HETATM 10 C C20 EH9 . . . C 3 11.606 17.134 22.408 1 35.8 ? C20 EH9 356 A 1 
HETATM 11 C C21 EH9 . . . C 3 10.305 17.931 22.19 1 39.75 ? C21 EH9 356 A 1 
HETATM 12 N N24 EH9 . . . C 3 11.092 11.199 21.203 1 30.83 ? N24 EH9 356 A 1 
HETATM 13 C C26 EH9 . . . C 3 9.685 17.746 20.814 1 39.57 ? C26 EH9 356 A 1 
HETATM 14 C C28 EH9 . . . C 3 8.36 18.418 20.498 1 42.76 ? C28 EH9 356 A 1 
HETATM 15 C C30 EH9 . . . C 3 7.876 17.843 19.152 1 44.36 ? C30 EH9 356 A 1 
HETATM 16 C C31 EH9 . . . C 3 8.006 16.297 19.082 1 43.2 ? C31 EH9 356 A 1 
HETATM 17 C C34 EH9 . . . C 3 6.794 15.575 18.496 1 43.87 ? C34 EH9 356 A 1 
HETATM 18 C C36 EH9 . . . C 3 12.91 17.748 21.908 1 39.79 ? C36 EH9 356 A 1 
HETATM 19 O O38 EH9 . . . C 3 13.961 17.319 22.734 1 40.54 ? O38 EH9 356 A 1 
HETATM 20 C C40 EH9 . . . C 3 13.19 17.83 20.408 1 40.13 ? C40 EH9 356 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           717 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#