data_2Z7L # _model_server_result.job_id V69p_ruwB4LkL6BrnZxutA _model_server_result.datetime_utc '2024-11-18 11:33:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2z7l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 2Z7L # _exptl.entry_id 2Z7L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 377.397 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[4-({5-(AMINOCARBONYL)-4-[(3-METHYLPHENYL)AMINO]PYRIMIDIN-2-YL}AMINO)PHENYL]ACETIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.58 _cell.angle_gamma 90 _cell.entry_id 2Z7L _cell.length_a 48.873 _cell.length_b 69.962 _cell.length_c 60.775 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Z7L _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 167 A CYS 161 1_555 D S2 BME . A BME 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale2 A SG CYS 172 A CYS 166 1_555 F S2 BME . A BME 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale3 A SG CYS 260 A CYS 254 1_555 E S2 BME . A BME 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C20 H19 N5 O3' _chem_comp.formula_weight 377.397 _chem_comp.id S91 _chem_comp.mon_nstd_flag . _chem_comp.name '[4-({5-(AMINOCARBONYL)-4-[(3-METHYLPHENYL)AMINO]PYRIMIDIN-2-YL}AMINO)PHENYL]ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(4-{[5-CARBAMOYL-4-(3-METHYLANILINO)PYRIMIDIN-2-YL]AMINO}PHENYL)ACETIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 S91 sing 286 n y C1 C6 S91 doub 287 n y C1 C7 S91 sing 288 n n C2 C3 S91 doub 289 n y C2 H2 S91 sing 290 n n C3 C4 S91 sing 291 n y C3 H3 S91 sing 292 n n C4 C5 S91 doub 293 n y C4 N4 S91 sing 294 n n C5 C6 S91 sing 295 n y C5 H5 S91 sing 296 n n C6 H6 S91 sing 297 n n C7 C8 S91 sing 298 n n C7 H71 S91 sing 299 n n C7 H72 S91 sing 300 n n C8 O1 S91 sing 301 n n C8 O2 S91 doub 302 n n O1 HO1 S91 sing 303 n n N1 C9 S91 doub 304 n y N1 C12 S91 sing 305 n y C9 C10 S91 sing 306 n y C9 N3 S91 sing 307 n n C10 C11 S91 doub 308 n y C10 C13 S91 sing 309 n n C11 N2 S91 sing 310 n y C11 H11 S91 sing 311 n n N2 C12 S91 doub 312 n y C12 N4 S91 sing 313 n n C13 O3 S91 doub 314 n n C13 N5 S91 sing 315 n n N3 C17 S91 sing 316 n n N3 HN3 S91 sing 317 n n N4 HN4 S91 sing 318 n n N5 HN51 S91 sing 319 n n N5 HN52 S91 sing 320 n n C14 C15 S91 doub 321 n y C14 C19 S91 sing 322 n y C14 H14 S91 sing 323 n n C15 C16 S91 sing 324 n y C15 H15 S91 sing 325 n n C16 C17 S91 doub 326 n y C16 H16 S91 sing 327 n n C17 C18 S91 sing 328 n y C18 C19 S91 doub 329 n y C18 H18 S91 sing 330 n n C19 C20 S91 sing 331 n n C20 H201 S91 sing 332 n n C20 H202 S91 sing 333 n n C20 H203 S91 sing 334 n n # _atom_sites.entry_id 2Z7L _atom_sites.fract_transf_matrix[1][1] 0.020461 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007276 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014294 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017464 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 2100 2100 SO4 SO4 . C 3 S91 A 1 1001 1001 S91 S91 . D 4 BME A 1 2001 2001 BME SEO . E 4 BME A 1 2002 2002 BME SEO . F 4 BME A 1 2003 2003 BME SEO . G 5 HOH A 1 2101 1 HOH HOH . G 5 HOH A 2 2102 2 HOH HOH . G 5 HOH A 3 2103 4 HOH HOH . G 5 HOH A 4 2104 5 HOH HOH . G 5 HOH A 5 2105 6 HOH HOH . G 5 HOH A 6 2106 7 HOH HOH . G 5 HOH A 7 2107 8 HOH HOH . G 5 HOH A 8 2108 9 HOH HOH . G 5 HOH A 9 2109 10 HOH HOH . G 5 HOH A 10 2110 11 HOH HOH . G 5 HOH A 11 2111 12 HOH HOH . G 5 HOH A 12 2112 13 HOH HOH . G 5 HOH A 13 2113 14 HOH HOH . G 5 HOH A 14 2114 15 HOH HOH . G 5 HOH A 15 2115 16 HOH HOH . G 5 HOH A 16 2116 17 HOH HOH . G 5 HOH A 17 2117 18 HOH HOH . G 5 HOH A 18 2118 19 HOH HOH . G 5 HOH A 19 2119 20 HOH HOH . G 5 HOH A 20 2120 21 HOH HOH . G 5 HOH A 21 2121 22 HOH HOH . G 5 HOH A 22 2122 23 HOH HOH . G 5 HOH A 23 2123 24 HOH HOH . G 5 HOH A 24 2124 25 HOH HOH . G 5 HOH A 25 2125 26 HOH HOH . G 5 HOH A 26 2126 27 HOH HOH . G 5 HOH A 27 2127 28 HOH HOH . G 5 HOH A 28 2128 29 HOH HOH . G 5 HOH A 29 2129 30 HOH HOH . G 5 HOH A 30 2130 31 HOH HOH . G 5 HOH A 31 2131 32 HOH HOH . G 5 HOH A 32 2132 33 HOH HOH . G 5 HOH A 33 2133 34 HOH HOH . G 5 HOH A 34 2134 35 HOH HOH . G 5 HOH A 35 2135 36 HOH HOH . G 5 HOH A 36 2136 37 HOH HOH . G 5 HOH A 37 2137 38 HOH HOH . G 5 HOH A 38 2138 39 HOH HOH . G 5 HOH A 39 2139 40 HOH HOH . G 5 HOH A 40 2140 41 HOH HOH . G 5 HOH A 41 2141 42 HOH HOH . G 5 HOH A 42 2142 43 HOH HOH . G 5 HOH A 43 2143 44 HOH HOH . G 5 HOH A 44 2144 45 HOH HOH . G 5 HOH A 45 2145 46 HOH HOH . G 5 HOH A 46 2146 47 HOH HOH . G 5 HOH A 47 2147 48 HOH HOH . G 5 HOH A 48 2148 49 HOH HOH . G 5 HOH A 49 2149 50 HOH HOH . G 5 HOH A 50 2150 51 HOH HOH . G 5 HOH A 51 2151 52 HOH HOH . G 5 HOH A 52 2152 53 HOH HOH . G 5 HOH A 53 2153 54 HOH HOH . G 5 HOH A 54 2154 55 HOH HOH . G 5 HOH A 55 2155 56 HOH HOH . G 5 HOH A 56 2156 57 HOH HOH . G 5 HOH A 57 2157 58 HOH HOH . G 5 HOH A 58 2158 59 HOH HOH . G 5 HOH A 59 2159 60 HOH HOH . G 5 HOH A 60 2160 61 HOH HOH . G 5 HOH A 61 2161 62 HOH HOH . G 5 HOH A 62 2162 63 HOH HOH . G 5 HOH A 63 2163 64 HOH HOH . G 5 HOH A 64 2164 65 HOH HOH . G 5 HOH A 65 2165 66 HOH HOH . G 5 HOH A 66 2166 67 HOH HOH . G 5 HOH A 67 2167 68 HOH HOH . G 5 HOH A 68 2168 69 HOH HOH . G 5 HOH A 69 2169 70 HOH HOH . G 5 HOH A 70 2170 71 HOH HOH . G 5 HOH A 71 2171 72 HOH HOH . G 5 HOH A 72 2172 73 HOH HOH . G 5 HOH A 73 2173 74 HOH HOH . G 5 HOH A 74 2174 75 HOH HOH . G 5 HOH A 75 2175 76 HOH HOH . G 5 HOH A 76 2176 77 HOH HOH . G 5 HOH A 77 2177 78 HOH HOH . G 5 HOH A 78 2178 79 HOH HOH . G 5 HOH A 79 2179 80 HOH HOH . G 5 HOH A 80 2180 81 HOH HOH . G 5 HOH A 81 2181 82 HOH HOH . G 5 HOH A 82 2182 83 HOH HOH . G 5 HOH A 83 2183 84 HOH HOH . G 5 HOH A 84 2184 85 HOH HOH . G 5 HOH A 85 2185 86 HOH HOH . G 5 HOH A 86 2186 87 HOH HOH . G 5 HOH A 87 2187 88 HOH HOH . G 5 HOH A 88 2188 89 HOH HOH . G 5 HOH A 89 2189 90 HOH HOH . G 5 HOH A 90 2190 91 HOH HOH . G 5 HOH A 91 2191 92 HOH HOH . G 5 HOH A 92 2192 93 HOH HOH . G 5 HOH A 93 2193 94 HOH HOH . G 5 HOH A 94 2194 95 HOH HOH . G 5 HOH A 95 2195 96 HOH HOH . G 5 HOH A 96 2196 97 HOH HOH . G 5 HOH A 97 2197 98 HOH HOH . G 5 HOH A 98 2198 99 HOH HOH . G 5 HOH A 99 2199 100 HOH HOH . G 5 HOH A 100 2200 101 HOH HOH . G 5 HOH A 101 2201 102 HOH HOH . G 5 HOH A 102 2202 103 HOH HOH . G 5 HOH A 103 2203 104 HOH HOH . G 5 HOH A 104 2204 105 HOH HOH . G 5 HOH A 105 2205 106 HOH HOH . G 5 HOH A 106 2206 107 HOH HOH . G 5 HOH A 107 2207 108 HOH HOH . G 5 HOH A 108 2208 109 HOH HOH . G 5 HOH A 109 2209 110 HOH HOH . G 5 HOH A 110 2210 111 HOH HOH . G 5 HOH A 111 2211 112 HOH HOH . G 5 HOH A 112 2212 113 HOH HOH . G 5 HOH A 113 2213 114 HOH HOH . G 5 HOH A 114 2214 115 HOH HOH . G 5 HOH A 115 2215 116 HOH HOH . G 5 HOH A 116 2216 117 HOH HOH . G 5 HOH A 117 2217 118 HOH HOH . G 5 HOH A 118 2218 119 HOH HOH . G 5 HOH A 119 2219 120 HOH HOH . G 5 HOH A 120 2220 121 HOH HOH . G 5 HOH A 121 2221 122 HOH HOH . G 5 HOH A 122 2222 123 HOH HOH . G 5 HOH A 123 2223 124 HOH HOH . G 5 HOH A 124 2224 125 HOH HOH . G 5 HOH A 125 2225 126 HOH HOH . G 5 HOH A 126 2226 127 HOH HOH . G 5 HOH A 127 2227 128 HOH HOH . G 5 HOH A 128 2228 129 HOH HOH . G 5 HOH A 129 2229 130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 S91 . . . C 3 22.597 9.529 10.733 1 61.31 ? C1 S91 1001 A 1 HETATM 2 C C2 S91 . . . C 3 23.623 9.629 11.769 1 60.29 ? C2 S91 1001 A 1 HETATM 3 C C3 S91 . . . C 3 23.873 8.471 12.601 1 58.97 ? C3 S91 1001 A 1 HETATM 4 C C4 S91 . . . C 3 23.081 7.283 12.346 1 57.23 ? C4 S91 1001 A 1 HETATM 5 C C5 S91 . . . C 3 22.046 7.189 11.297 1 58.9 ? C5 S91 1001 A 1 HETATM 6 C C6 S91 . . . C 3 21.8 8.345 10.473 1 59.41 ? C6 S91 1001 A 1 HETATM 7 C C7 S91 . . . C 3 22.327 10.725 9.827 1 63.34 ? C7 S91 1001 A 1 HETATM 8 C C8 S91 . . . C 3 23.647 11.329 9.39 1 65.21 ? C8 S91 1001 A 1 HETATM 9 O O1 S91 . . . C 3 24.11 12.26 10.056 1 66.4 ? O1 S91 1001 A 1 HETATM 10 O O2 S91 . . . C 3 24.212 10.855 8.397 1 65.32 ? O2 S91 1001 A 1 HETATM 11 N N1 S91 . . . C 3 21.446 6.389 14.465 1 46.66 ? N1 S91 1001 A 1 HETATM 12 C C9 S91 . . . C 3 20.544 5.774 15.249 1 44.96 ? C9 S91 1001 A 1 HETATM 13 C C10 S91 . . . C 3 20.604 4.415 15.539 1 44.13 ? C10 S91 1001 A 1 HETATM 14 C C11 S91 . . . C 3 21.642 3.652 14.99 1 44.02 ? C11 S91 1001 A 1 HETATM 15 N N2 S91 . . . C 3 22.521 4.288 14.217 1 46.48 ? N2 S91 1001 A 1 HETATM 16 C C12 S91 . . . C 3 22.415 5.613 13.967 1 47.75 ? C12 S91 1001 A 1 HETATM 17 C C13 S91 . . . C 3 19.607 3.836 16.39 1 43.38 ? C13 S91 1001 A 1 HETATM 18 O O3 S91 . . . C 3 18.652 4.479 16.802 1 44.9 ? O3 S91 1001 A 1 HETATM 19 N N3 S91 . . . C 3 19.52 6.494 15.802 1 44.63 ? N3 S91 1001 A 1 HETATM 20 N N4 S91 . . . C 3 23.353 6.202 13.164 1 52.21 ? N4 S91 1001 A 1 HETATM 21 N N5 S91 . . . C 3 19.84 2.577 16.775 1 46.21 ? N5 S91 1001 A 1 HETATM 22 C C14 S91 . . . C 3 17.208 9.76 14.499 1 46.03 ? C14 S91 1001 A 1 HETATM 23 C C15 S91 . . . C 3 16.593 8.637 15.159 1 46.95 ? C15 S91 1001 A 1 HETATM 24 C C16 S91 . . . C 3 17.464 7.567 15.574 1 45.15 ? C16 S91 1001 A 1 HETATM 25 C C17 S91 . . . C 3 18.884 7.603 15.33 1 44.32 ? C17 S91 1001 A 1 HETATM 26 C C18 S91 . . . C 3 19.514 8.729 14.665 1 45.12 ? C18 S91 1001 A 1 HETATM 27 C C19 S91 . . . C 3 18.625 9.811 14.247 1 47.36 ? C19 S91 1001 A 1 HETATM 28 C C20 S91 . . . C 3 19.163 10.983 13.566 1 46.61 ? C20 S91 1001 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #