data_2Z82 # _model_server_result.job_id hf1mAhO_63gWqxrApFIDzg _model_server_result.datetime_utc '2024-11-13 18:59:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2z82 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":821}' # _entry.id 2Z82 # _exptl.entry_id 2Z82 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Z82 _cell.length_a 84.65 _cell.length_b 81.334 _cell.length_c 90.904 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Z82 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 MAN NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG N 801 NAG 2 n B NAG 2 B 2 NAG N 802 NAG 3 n C NAG 1 C 1 NAG N 811 NAG 3 n C NAG 2 C 2 NAG N 812 NAG 3 n C MAN 3 C 3 MAN N 813 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 30 1_555 A SG CYS 10 A CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 327 A CYS 353 1_555 A SG CYS 356 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 406 A CYS 432 1_555 A SG CYS 428 A CYS 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 A SG CYS 511 A CYS 537 1_555 A SG CYS 536 A CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 513 A CYS 539 1_555 A SG CYS 548 A CYS 574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 121 A ASN 147 1_555 D C1 NAG . A NAG 821 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale2 A ND2 ASN 388 A ASN 414 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale3 A ND2 ASN 416 A ASN 442 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? covale ? covale6 C O4 NAG . C NAG 2 1_555 C C1 MAN . C MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 261 n n C1 O1 NAG sing 262 n n C1 O5 NAG sing 263 n n C1 H1 NAG sing 264 n n C2 C3 NAG sing 265 n n C2 N2 NAG sing 266 n n C2 H2 NAG sing 267 n n C3 C4 NAG sing 268 n n C3 O3 NAG sing 269 n n C3 H3 NAG sing 270 n n C4 C5 NAG sing 271 n n C4 O4 NAG sing 272 n n C4 H4 NAG sing 273 n n C5 C6 NAG sing 274 n n C5 O5 NAG sing 275 n n C5 H5 NAG sing 276 n n C6 O6 NAG sing 277 n n C6 H61 NAG sing 278 n n C6 H62 NAG sing 279 n n C7 C8 NAG sing 280 n n C7 N2 NAG sing 281 n n C7 O7 NAG doub 282 n n C8 H81 NAG sing 283 n n C8 H82 NAG sing 284 n n C8 H83 NAG sing 285 n n N2 HN2 NAG sing 286 n n O1 HO1 NAG sing 287 n n O3 HO3 NAG sing 288 n n O4 HO4 NAG sing 289 n n O6 HO6 NAG sing 290 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2Z82 _atom_sites.fract_transf_matrix[1][1] 0.011813 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012295 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011001 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 821 821 NAG NAG . E 5 PDJ A 1 1 1 PDJ PC2 . F 6 HOH A 1 822 1 HOH TIP . F 6 HOH A 2 823 2 HOH TIP . F 6 HOH A 3 824 3 HOH TIP . F 6 HOH A 4 825 4 HOH TIP . F 6 HOH A 5 826 5 HOH TIP . F 6 HOH A 6 827 6 HOH TIP . F 6 HOH A 7 828 7 HOH TIP . F 6 HOH A 8 829 8 HOH TIP . F 6 HOH A 9 830 9 HOH TIP . F 6 HOH A 10 831 10 HOH TIP . F 6 HOH A 11 832 11 HOH TIP . F 6 HOH A 12 833 12 HOH TIP . F 6 HOH A 13 834 13 HOH TIP . F 6 HOH A 14 835 14 HOH TIP . F 6 HOH A 15 836 15 HOH TIP . F 6 HOH A 16 837 16 HOH TIP . F 6 HOH A 17 838 17 HOH TIP . F 6 HOH A 18 839 18 HOH TIP . F 6 HOH A 19 840 19 HOH TIP . F 6 HOH A 20 841 20 HOH TIP . F 6 HOH A 21 842 21 HOH TIP . F 6 HOH A 22 843 22 HOH TIP . F 6 HOH A 23 844 23 HOH TIP . F 6 HOH A 24 845 24 HOH TIP . F 6 HOH A 25 846 25 HOH TIP . F 6 HOH A 26 847 26 HOH TIP . F 6 HOH A 27 848 27 HOH TIP . F 6 HOH A 28 849 28 HOH TIP . F 6 HOH A 29 850 29 HOH TIP . F 6 HOH A 30 851 30 HOH TIP . F 6 HOH A 31 852 31 HOH TIP . F 6 HOH A 32 853 32 HOH TIP . F 6 HOH A 33 854 33 HOH TIP . F 6 HOH A 34 855 34 HOH TIP . F 6 HOH A 35 856 35 HOH TIP . F 6 HOH A 36 857 36 HOH TIP . F 6 HOH A 37 858 37 HOH TIP . F 6 HOH A 38 859 38 HOH TIP . F 6 HOH A 39 860 39 HOH TIP . F 6 HOH A 40 861 40 HOH TIP . F 6 HOH A 41 862 41 HOH TIP . F 6 HOH A 42 863 42 HOH TIP . F 6 HOH A 43 864 43 HOH TIP . F 6 HOH A 44 865 44 HOH TIP . F 6 HOH A 45 866 45 HOH TIP . F 6 HOH A 46 867 46 HOH TIP . F 6 HOH A 47 868 47 HOH TIP . F 6 HOH A 48 869 48 HOH TIP . F 6 HOH A 49 870 49 HOH TIP . F 6 HOH A 50 871 50 HOH TIP . F 6 HOH A 51 872 51 HOH TIP . F 6 HOH A 52 873 52 HOH TIP . F 6 HOH A 53 874 53 HOH TIP . F 6 HOH A 54 875 54 HOH TIP . F 6 HOH A 55 876 55 HOH TIP . F 6 HOH A 56 877 56 HOH TIP . F 6 HOH A 57 878 57 HOH TIP . F 6 HOH A 58 879 58 HOH TIP . F 6 HOH A 59 880 59 HOH TIP . F 6 HOH A 60 881 60 HOH TIP . F 6 HOH A 61 882 61 HOH TIP . F 6 HOH A 62 883 62 HOH TIP . F 6 HOH A 63 884 63 HOH TIP . F 6 HOH A 64 885 64 HOH TIP . F 6 HOH A 65 886 65 HOH TIP . F 6 HOH A 66 887 66 HOH TIP . F 6 HOH A 67 888 67 HOH TIP . F 6 HOH A 68 889 68 HOH TIP . F 6 HOH A 69 890 69 HOH TIP . F 6 HOH A 70 891 70 HOH TIP . F 6 HOH A 71 892 71 HOH TIP . F 6 HOH A 72 893 72 HOH TIP . F 6 HOH A 73 894 73 HOH TIP . F 6 HOH A 74 895 74 HOH TIP . F 6 HOH A 75 896 75 HOH TIP . F 6 HOH A 76 897 76 HOH TIP . F 6 HOH A 77 898 77 HOH TIP . F 6 HOH A 78 899 78 HOH TIP . F 6 HOH A 79 900 79 HOH TIP . F 6 HOH A 80 901 80 HOH TIP . F 6 HOH A 81 902 81 HOH TIP . F 6 HOH A 82 903 82 HOH TIP . F 6 HOH A 83 904 83 HOH TIP . F 6 HOH A 84 905 84 HOH TIP . F 6 HOH A 85 906 85 HOH TIP . F 6 HOH A 86 907 86 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 4 -1.365 37.884 -23.98 1 63.6 ? C1 NAG 821 A 1 HETATM 2 C C2 NAG . . . D 4 -1.905 36.989 -25.101 1 65.63 ? C2 NAG 821 A 1 HETATM 3 C C3 NAG . . . D 4 -2.72 37.867 -26.04 1 65.71 ? C3 NAG 821 A 1 HETATM 4 C C4 NAG . . . D 4 -1.84 39.001 -26.595 1 66.53 ? C4 NAG 821 A 1 HETATM 5 C C5 NAG . . . D 4 -0.968 39.726 -25.523 1 66.06 ? C5 NAG 821 A 1 HETATM 6 C C6 NAG . . . D 4 -1.665 40.859 -24.787 1 65.86 ? C6 NAG 821 A 1 HETATM 7 C C7 NAG . . . D 4 -1.026 35.463 -26.764 1 66.34 ? C7 NAG 821 A 1 HETATM 8 C C8 NAG . . . D 4 -0.66 34.023 -26.429 1 65.95 ? C8 NAG 821 A 1 HETATM 9 N N2 NAG . . . D 4 -0.797 36.387 -25.831 1 66.3 ? N2 NAG 821 A 1 HETATM 10 O O3 NAG . . . D 4 -3.835 38.41 -25.348 1 65.88 ? O3 NAG 821 A 1 HETATM 11 O O4 NAG . . . D 4 -1.001 38.504 -27.629 1 68.22 ? O4 NAG 821 A 1 HETATM 12 O O5 NAG . . . D 4 -0.409 38.808 -24.529 1 64.62 ? O5 NAG 821 A 1 HETATM 13 O O6 NAG . . . D 4 -0.742 41.877 -24.422 1 64.43 ? O6 NAG 821 A 1 HETATM 14 O O7 NAG . . . D 4 -1.515 35.73 -27.862 1 64.65 ? O7 NAG 821 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #