data_2Z87
#
_model_server_result.job_id            7Dg5phzXsTm467MLdR3ICw 
_model_server_result.datetime_utc      '2024-11-14 16:52:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2z87 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":4}' 
#
_entry.id    2Z87 
#
_exptl.entry_id    2Z87 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.47 
_cell.angle_gamma         90 
_cell.entry_id            2Z87 
_cell.length_a            82.371 
_cell.length_b            109.285 
_cell.length_c            85.575 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2Z87 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L 1 1 
A,C,D,E,F,K 2 1 
B,G,H,I,J,L 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 I N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E MN MN . A MN 1 1_555 A OD2 ASP 183 A ASP 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc2 E MN MN . A MN 1 1_555 C O1A UD2 . A UD2 683 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? 
metalc ? metalc3 E MN MN . A MN 1 1_555 K O HOH . A HOH 690 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc4 F MN MN . A MN 2 1_555 A OD2 ASP 463 A ASP 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc5 H O1B UDP . B UDP 1 1_555 J MN MN . B MN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc6 I MN MN . B MN 3 1_555 G O1B UD2 . B UD2 683 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? 
metalc ? metalc7 I MN MN . B MN 3 1_555 G O1A UD2 . B UD2 683 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? 
metalc ? metalc8 I MN MN . B MN 3 1_555 L O HOH . B HOH 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc9 I MN MN . B MN 3 1_555 L O HOH . B HOH 746 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc10 J MN MN . B MN 4 1_555 B OD2 ASP 463 B ASP 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2Z87 
_atom_sites.fract_transf_matrix[1][1]    0.01214 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002908 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00915 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012016 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 UD2 A 1 683 404 UD2 UD2 . 
D 3 UDP A 1 684 1 UDP UDP . 
E 4 MN A 1 1 1 MN MN . 
F 4 MN A 1 2 2 MN MN . 
G 2 UD2 B 1 683 404 UD2 UD2 . 
H 3 UDP B 1 1 1 UDP UDP . 
I 4 MN B 1 3 3 MN MN . 
J 4 MN B 1 4 4 MN MN . 
K 5 HOH A 1 685 2 HOH HOH . 
K 5 HOH A 2 686 3 HOH HOH . 
K 5 HOH A 3 687 4 HOH HOH . 
K 5 HOH A 4 688 5 HOH HOH . 
K 5 HOH A 5 689 6 HOH HOH . 
K 5 HOH A 6 690 9 HOH HOH . 
K 5 HOH A 7 691 11 HOH HOH . 
K 5 HOH A 8 692 12 HOH HOH . 
K 5 HOH A 9 693 14 HOH HOH . 
K 5 HOH A 10 694 15 HOH HOH . 
K 5 HOH A 11 695 18 HOH HOH . 
K 5 HOH A 12 696 20 HOH HOH . 
K 5 HOH A 13 697 22 HOH HOH . 
K 5 HOH A 14 698 27 HOH HOH . 
K 5 HOH A 15 699 28 HOH HOH . 
K 5 HOH A 16 700 30 HOH HOH . 
K 5 HOH A 17 701 31 HOH HOH . 
K 5 HOH A 18 702 33 HOH HOH . 
K 5 HOH A 19 703 34 HOH HOH . 
K 5 HOH A 20 704 35 HOH HOH . 
K 5 HOH A 21 705 36 HOH HOH . 
K 5 HOH A 22 706 37 HOH HOH . 
K 5 HOH A 23 707 41 HOH HOH . 
K 5 HOH A 24 708 42 HOH HOH . 
K 5 HOH A 25 709 44 HOH HOH . 
K 5 HOH A 26 710 45 HOH HOH . 
K 5 HOH A 27 711 47 HOH HOH . 
K 5 HOH A 28 712 48 HOH HOH . 
K 5 HOH A 29 713 49 HOH HOH . 
K 5 HOH A 30 714 51 HOH HOH . 
K 5 HOH A 31 715 52 HOH HOH . 
K 5 HOH A 32 716 55 HOH HOH . 
K 5 HOH A 33 717 57 HOH HOH . 
K 5 HOH A 34 718 58 HOH HOH . 
K 5 HOH A 35 719 61 HOH HOH . 
K 5 HOH A 36 720 62 HOH HOH . 
K 5 HOH A 37 721 64 HOH HOH . 
K 5 HOH A 38 722 65 HOH HOH . 
K 5 HOH A 39 723 66 HOH HOH . 
K 5 HOH A 40 724 67 HOH HOH . 
K 5 HOH A 41 725 68 HOH HOH . 
K 5 HOH A 42 726 69 HOH HOH . 
K 5 HOH A 43 727 70 HOH HOH . 
K 5 HOH A 44 728 71 HOH HOH . 
K 5 HOH A 45 729 72 HOH HOH . 
K 5 HOH A 46 730 73 HOH HOH . 
K 5 HOH A 47 731 75 HOH HOH . 
K 5 HOH A 48 732 76 HOH HOH . 
K 5 HOH A 49 733 77 HOH HOH . 
K 5 HOH A 50 734 80 HOH HOH . 
K 5 HOH A 51 735 81 HOH HOH . 
K 5 HOH A 52 736 83 HOH HOH . 
K 5 HOH A 53 737 84 HOH HOH . 
K 5 HOH A 54 738 85 HOH HOH . 
K 5 HOH A 55 739 86 HOH HOH . 
K 5 HOH A 56 740 87 HOH HOH . 
K 5 HOH A 57 741 93 HOH HOH . 
K 5 HOH A 58 742 94 HOH HOH . 
K 5 HOH A 59 743 98 HOH HOH . 
K 5 HOH A 60 744 99 HOH HOH . 
K 5 HOH A 61 745 101 HOH HOH . 
K 5 HOH A 62 746 102 HOH HOH . 
K 5 HOH A 63 747 106 HOH HOH . 
K 5 HOH A 64 748 108 HOH HOH . 
K 5 HOH A 65 749 112 HOH HOH . 
K 5 HOH A 66 750 113 HOH HOH . 
K 5 HOH A 67 751 115 HOH HOH . 
K 5 HOH A 68 752 118 HOH HOH . 
K 5 HOH A 69 753 123 HOH HOH . 
K 5 HOH A 70 754 124 HOH HOH . 
K 5 HOH A 71 755 126 HOH HOH . 
K 5 HOH A 72 756 129 HOH HOH . 
K 5 HOH A 73 757 132 HOH HOH . 
K 5 HOH A 74 758 134 HOH HOH . 
K 5 HOH A 75 759 135 HOH HOH . 
K 5 HOH A 76 760 136 HOH HOH . 
K 5 HOH A 77 761 138 HOH HOH . 
K 5 HOH A 78 762 39 HOH HOH . 
L 5 HOH B 1 684 1 HOH HOH . 
L 5 HOH B 2 685 7 HOH HOH . 
L 5 HOH B 3 686 8 HOH HOH . 
L 5 HOH B 4 687 10 HOH HOH . 
L 5 HOH B 5 688 13 HOH HOH . 
L 5 HOH B 6 689 16 HOH HOH . 
L 5 HOH B 7 690 17 HOH HOH . 
L 5 HOH B 8 691 19 HOH HOH . 
L 5 HOH B 9 692 21 HOH HOH . 
L 5 HOH B 10 693 23 HOH HOH . 
L 5 HOH B 11 694 24 HOH HOH . 
L 5 HOH B 12 695 25 HOH HOH . 
L 5 HOH B 13 696 26 HOH HOH . 
L 5 HOH B 14 697 29 HOH HOH . 
L 5 HOH B 15 698 32 HOH HOH . 
L 5 HOH B 16 699 38 HOH HOH . 
L 5 HOH B 17 700 40 HOH HOH . 
L 5 HOH B 18 701 43 HOH HOH . 
L 5 HOH B 19 702 46 HOH HOH . 
L 5 HOH B 20 703 50 HOH HOH . 
L 5 HOH B 21 704 53 HOH HOH . 
L 5 HOH B 22 705 54 HOH HOH . 
L 5 HOH B 23 706 56 HOH HOH . 
L 5 HOH B 24 707 59 HOH HOH . 
L 5 HOH B 25 708 60 HOH HOH . 
L 5 HOH B 26 709 63 HOH HOH . 
L 5 HOH B 27 710 74 HOH HOH . 
L 5 HOH B 28 711 78 HOH HOH . 
L 5 HOH B 29 712 79 HOH HOH . 
L 5 HOH B 30 713 82 HOH HOH . 
L 5 HOH B 31 714 88 HOH HOH . 
L 5 HOH B 32 715 89 HOH HOH . 
L 5 HOH B 33 716 90 HOH HOH . 
L 5 HOH B 34 717 91 HOH HOH . 
L 5 HOH B 35 718 92 HOH HOH . 
L 5 HOH B 36 719 95 HOH HOH . 
L 5 HOH B 37 720 96 HOH HOH . 
L 5 HOH B 38 721 97 HOH HOH . 
L 5 HOH B 39 722 100 HOH HOH . 
L 5 HOH B 40 723 103 HOH HOH . 
L 5 HOH B 41 724 104 HOH HOH . 
L 5 HOH B 42 725 105 HOH HOH . 
L 5 HOH B 43 726 107 HOH HOH . 
L 5 HOH B 44 727 109 HOH HOH . 
L 5 HOH B 45 728 110 HOH HOH . 
L 5 HOH B 46 729 111 HOH HOH . 
L 5 HOH B 47 730 114 HOH HOH . 
L 5 HOH B 48 731 116 HOH HOH . 
L 5 HOH B 49 732 117 HOH HOH . 
L 5 HOH B 50 733 119 HOH HOH . 
L 5 HOH B 51 734 120 HOH HOH . 
L 5 HOH B 52 735 121 HOH HOH . 
L 5 HOH B 53 736 122 HOH HOH . 
L 5 HOH B 54 737 125 HOH HOH . 
L 5 HOH B 55 738 127 HOH HOH . 
L 5 HOH B 56 739 128 HOH HOH . 
L 5 HOH B 57 740 130 HOH HOH . 
L 5 HOH B 58 741 131 HOH HOH . 
L 5 HOH B 59 742 133 HOH HOH . 
L 5 HOH B 60 743 137 HOH HOH . 
L 5 HOH B 61 744 139 HOH HOH . 
L 5 HOH B 62 745 140 HOH HOH . 
L 5 HOH B 63 746 141 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         J 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -19.191 
_atom_site.Cartn_y               -13.485 
_atom_site.Cartn_z               34.234 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        65.51 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           4 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           216 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#