data_2Z8C # _model_server_result.job_id ttl17MyuWQptzb9gBktZBg _model_server_result.datetime_utc '2024-11-13 18:28:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2z8c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 2Z8C # _exptl.entry_id 2Z8C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 377.397 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[4-({5-(AMINOCARBONYL)-4-[(3-METHYLPHENYL)AMINO]PYRIMIDIN-2-YL}AMINO)PHENYL]ACETIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2Z8C _cell.length_a 71.54 _cell.length_b 71.54 _cell.length_c 133.85 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Z8C _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 177 A ILE 1157 1_555 A N PTR 178 A PTR 1158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale2 A C PTR 178 A PTR 1158 1_555 A N GLU 179 A GLU 1159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C ASP 181 A ASP 1161 1_555 A N PTR 182 A PTR 1162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale4 A C PTR 182 A PTR 1162 1_555 A N PTR 183 A PTR 1163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 A C PTR 183 A PTR 1163 1_555 A N ARG 184 A ARG 1164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C20 H19 N5 O3' _chem_comp.formula_weight 377.397 _chem_comp.id S91 _chem_comp.mon_nstd_flag . _chem_comp.name '[4-({5-(AMINOCARBONYL)-4-[(3-METHYLPHENYL)AMINO]PYRIMIDIN-2-YL}AMINO)PHENYL]ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(4-{[5-CARBAMOYL-4-(3-METHYLANILINO)PYRIMIDIN-2-YL]AMINO}PHENYL)ACETIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 S91 sing 304 n y C1 C6 S91 doub 305 n y C1 C7 S91 sing 306 n n C2 C3 S91 doub 307 n y C2 H2 S91 sing 308 n n C3 C4 S91 sing 309 n y C3 H3 S91 sing 310 n n C4 C5 S91 doub 311 n y C4 N4 S91 sing 312 n n C5 C6 S91 sing 313 n y C5 H5 S91 sing 314 n n C6 H6 S91 sing 315 n n C7 C8 S91 sing 316 n n C7 H71 S91 sing 317 n n C7 H72 S91 sing 318 n n C8 O1 S91 sing 319 n n C8 O2 S91 doub 320 n n O1 HO1 S91 sing 321 n n N1 C9 S91 doub 322 n y N1 C12 S91 sing 323 n y C9 C10 S91 sing 324 n y C9 N3 S91 sing 325 n n C10 C11 S91 doub 326 n y C10 C13 S91 sing 327 n n C11 N2 S91 sing 328 n y C11 H11 S91 sing 329 n n N2 C12 S91 doub 330 n y C12 N4 S91 sing 331 n n C13 O3 S91 doub 332 n n C13 N5 S91 sing 333 n n N3 C17 S91 sing 334 n n N3 HN3 S91 sing 335 n n N4 HN4 S91 sing 336 n n N5 HN51 S91 sing 337 n n N5 HN52 S91 sing 338 n n C14 C15 S91 doub 339 n y C14 C19 S91 sing 340 n y C14 H14 S91 sing 341 n n C15 C16 S91 sing 342 n y C15 H15 S91 sing 343 n n C16 C17 S91 doub 344 n y C16 H16 S91 sing 345 n n C17 C18 S91 sing 346 n y C18 C19 S91 doub 347 n y C18 H18 S91 sing 348 n n C19 C20 S91 sing 349 n n C20 H201 S91 sing 350 n n C20 H202 S91 sing 351 n n C20 H203 S91 sing 352 n n # _atom_sites.entry_id 2Z8C _atom_sites.fract_transf_matrix[1][1] 0.013978 _atom_sites.fract_transf_matrix[1][2] 0.00807 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016141 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007471 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id S91 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id S91 _pdbx_nonpoly_scheme.auth_mon_id S91 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 S91 . . . C 3 17.832 32.332 29.222 1 64.06 ? C1 S91 1 A 1 HETATM 2 C C2 S91 . . . C 3 18.761 33.24 29.904 1 63.02 ? C2 S91 1 A 1 HETATM 3 C C3 S91 . . . C 3 18.618 34.667 29.6 1 61.76 ? C3 S91 1 A 1 HETATM 4 C C4 S91 . . . C 3 17.547 35.085 28.639 1 58.77 ? C4 S91 1 A 1 HETATM 5 C C5 S91 . . . C 3 16.616 34.185 27.967 1 59.83 ? C5 S91 1 A 1 HETATM 6 C C6 S91 . . . C 3 16.775 32.767 28.276 1 63.93 ? C6 S91 1 A 1 HETATM 7 C C7 S91 . . . C 3 18.131 30.862 29.306 1 64.91 ? C7 S91 1 A 1 HETATM 8 C C8 S91 . . . C 3 16.977 30.16 29.966 1 65.63 ? C8 S91 1 A 1 HETATM 9 O O1 S91 . . . C 3 16.043 29.759 29.248 1 64.86 ? O1 S91 1 A 1 HETATM 10 O O2 S91 . . . C 3 17.007 30.042 31.195 1 66.71 ? O2 S91 1 A 1 HETATM 11 N N1 S91 . . . C 3 18.529 36.152 26.353 1 41.84 ? N1 S91 1 A 1 HETATM 12 C C9 S91 . . . C 3 19.122 36.776 25.325 1 42.45 ? C9 S91 1 A 1 HETATM 13 C C10 S91 . . . C 3 19.225 38.193 25.241 1 43.86 ? C10 S91 1 A 1 HETATM 14 C C11 S91 . . . C 3 18.705 39.03 26.251 1 42.74 ? C11 S91 1 A 1 HETATM 15 N N2 S91 . . . C 3 18.119 38.37 27.266 1 45.29 ? N2 S91 1 A 1 HETATM 16 C C12 S91 . . . C 3 18.047 36.988 27.293 1 46.95 ? C12 S91 1 A 1 HETATM 17 C C13 S91 . . . C 3 19.874 38.809 24.102 1 45.83 ? C13 S91 1 A 1 HETATM 18 O O3 S91 . . . C 3 20.585 38.177 23.301 1 44.4 ? O3 S91 1 A 1 HETATM 19 N N3 S91 . . . C 3 19.678 36.121 24.274 1 40.05 ? N3 S91 1 A 1 HETATM 20 N N4 S91 . . . C 3 17.431 36.412 28.363 1 53.41 ? N4 S91 1 A 1 HETATM 21 N N5 S91 . . . C 3 19.517 40.13 24.052 1 45.5 ? N5 S91 1 A 1 HETATM 22 C C14 S91 . . . C 3 19.876 32.085 22.975 1 39.85 ? C14 S91 1 A 1 HETATM 23 C C15 S91 . . . C 3 19.288 32.318 24.285 1 40.04 ? C15 S91 1 A 1 HETATM 24 C C16 S91 . . . C 3 19.207 33.689 24.76 1 40.49 ? C16 S91 1 A 1 HETATM 25 C C17 S91 . . . C 3 19.702 34.807 23.94 1 40.46 ? C17 S91 1 A 1 HETATM 26 C C18 S91 . . . C 3 20.287 34.584 22.64 1 40.47 ? C18 S91 1 A 1 HETATM 27 C C19 S91 . . . C 3 20.348 33.206 22.206 1 39.46 ? C19 S91 1 A 1 HETATM 28 C C20 S91 . . . C 3 20.921 32.924 20.92 1 41.53 ? C20 S91 1 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 136 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 475 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #