data_2Z8L
#
_model_server_result.job_id            JcIWOSkXsqeHsUqqNS_kaQ 
_model_server_result.datetime_utc      '2024-11-22 18:01:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2z8l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":605}' 
#
_entry.id    2Z8L 
#
_exptl.entry_id    2Z8L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          127.02 
_cell.angle_gamma         90 
_cell.entry_id            2Z8L 
_cell.length_a            37.625 
_cell.length_b            78.237 
_cell.length_c            55.276 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2Z8L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 GAL NAG C1 O1 . O4 HO4 . sing 
2 ? 2 3 2 SIA GAL C2 O2 . O3 HO3 . sing 
3 ? 2 4 1 FUC NAG C1 O1 . O3 HO3 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG X 603 NAG 
2 n B GAL 2 B 2 GAL X 602 GAL 
2 n B SIA 3 B 3 SIA X 601 SIA 
2 n B FUC 4 B 4 FUC X 604 FUC 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B O4 NAG . B NAG 1 1_555 B C1 GAL . B GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale2 B O3 NAG . B NAG 1 1_555 B C1 FUC . B FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale3 B O3 GAL . B GAL 2 1_555 B C2 SIA . B SIA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 337 n n 
P O2 PO4 sing 338 n n 
P O3 PO4 sing 339 n n 
P O4 PO4 sing 340 n n 
#
_atom_sites.entry_id                     2Z8L 
_atom_sites.fract_transf_matrix[1][1]    0.026578 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.020046 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012782 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02266 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 PO4 A 1 605 1 PO4 PO4 . 
D 4 GOL A 1 606 1 GOL GOL . 
E 5 HOH A 1 607 1 HOH HOH . 
E 5 HOH A 2 608 2 HOH HOH . 
E 5 HOH A 3 609 3 HOH HOH . 
E 5 HOH A 4 610 4 HOH HOH . 
E 5 HOH A 5 611 5 HOH HOH . 
E 5 HOH A 6 612 6 HOH HOH . 
E 5 HOH A 7 613 7 HOH HOH . 
E 5 HOH A 8 614 8 HOH HOH . 
E 5 HOH A 9 615 9 HOH HOH . 
E 5 HOH A 10 616 10 HOH HOH . 
E 5 HOH A 11 617 11 HOH HOH . 
E 5 HOH A 12 618 12 HOH HOH . 
E 5 HOH A 13 619 14 HOH HOH . 
E 5 HOH A 14 620 15 HOH HOH . 
E 5 HOH A 15 621 17 HOH HOH . 
E 5 HOH A 16 622 18 HOH HOH . 
E 5 HOH A 17 623 19 HOH HOH . 
E 5 HOH A 18 624 20 HOH HOH . 
E 5 HOH A 19 625 21 HOH HOH . 
E 5 HOH A 20 626 22 HOH HOH . 
E 5 HOH A 21 627 23 HOH HOH . 
E 5 HOH A 22 628 24 HOH HOH . 
E 5 HOH A 23 629 25 HOH HOH . 
E 5 HOH A 24 630 26 HOH HOH . 
E 5 HOH A 25 631 27 HOH HOH . 
E 5 HOH A 26 632 29 HOH HOH . 
E 5 HOH A 27 633 30 HOH HOH . 
E 5 HOH A 28 634 32 HOH HOH . 
E 5 HOH A 29 635 33 HOH HOH . 
E 5 HOH A 30 636 34 HOH HOH . 
E 5 HOH A 31 637 35 HOH HOH . 
E 5 HOH A 32 638 36 HOH HOH . 
E 5 HOH A 33 639 37 HOH HOH . 
E 5 HOH A 34 640 38 HOH HOH . 
E 5 HOH A 35 641 39 HOH HOH . 
E 5 HOH A 36 642 40 HOH HOH . 
E 5 HOH A 37 643 42 HOH HOH . 
E 5 HOH A 38 644 43 HOH HOH . 
E 5 HOH A 39 645 44 HOH HOH . 
E 5 HOH A 40 646 46 HOH HOH . 
E 5 HOH A 41 647 47 HOH HOH . 
E 5 HOH A 42 648 48 HOH HOH . 
E 5 HOH A 43 649 49 HOH HOH . 
E 5 HOH A 44 650 51 HOH HOH . 
E 5 HOH A 45 651 52 HOH HOH . 
E 5 HOH A 46 652 53 HOH HOH . 
E 5 HOH A 47 653 54 HOH HOH . 
E 5 HOH A 48 654 55 HOH HOH . 
E 5 HOH A 49 655 56 HOH HOH . 
E 5 HOH A 50 656 57 HOH HOH . 
E 5 HOH A 51 657 58 HOH HOH . 
E 5 HOH A 52 658 59 HOH HOH . 
E 5 HOH A 53 659 60 HOH HOH . 
E 5 HOH A 54 660 61 HOH HOH . 
E 5 HOH A 55 661 62 HOH HOH . 
E 5 HOH A 56 662 63 HOH HOH . 
E 5 HOH A 57 663 64 HOH HOH . 
E 5 HOH A 58 664 65 HOH HOH . 
E 5 HOH A 59 665 68 HOH HOH . 
E 5 HOH A 60 666 69 HOH HOH . 
E 5 HOH A 61 667 70 HOH HOH . 
E 5 HOH A 62 668 71 HOH HOH . 
E 5 HOH A 63 669 72 HOH HOH . 
E 5 HOH A 64 670 73 HOH HOH . 
E 5 HOH A 65 671 74 HOH HOH . 
E 5 HOH A 66 672 75 HOH HOH . 
E 5 HOH A 67 673 76 HOH HOH . 
E 5 HOH A 68 674 77 HOH HOH . 
E 5 HOH A 69 675 78 HOH HOH . 
E 5 HOH A 70 676 80 HOH HOH . 
E 5 HOH A 71 677 81 HOH HOH . 
E 5 HOH A 72 678 82 HOH HOH . 
E 5 HOH A 73 679 83 HOH HOH . 
E 5 HOH A 74 680 84 HOH HOH . 
E 5 HOH A 75 681 85 HOH HOH . 
E 5 HOH A 76 682 86 HOH HOH . 
E 5 HOH A 77 683 87 HOH HOH . 
E 5 HOH A 78 684 88 HOH HOH . 
E 5 HOH A 79 685 89 HOH HOH . 
E 5 HOH A 80 686 90 HOH HOH . 
E 5 HOH A 81 687 91 HOH HOH . 
E 5 HOH A 82 688 92 HOH HOH . 
E 5 HOH A 83 689 93 HOH HOH . 
E 5 HOH A 84 690 94 HOH HOH . 
E 5 HOH A 85 691 96 HOH HOH . 
E 5 HOH A 86 692 97 HOH HOH . 
E 5 HOH A 87 693 98 HOH HOH . 
E 5 HOH A 88 694 101 HOH HOH . 
E 5 HOH A 89 695 103 HOH HOH . 
E 5 HOH A 90 696 105 HOH HOH . 
E 5 HOH A 91 697 106 HOH HOH . 
E 5 HOH A 92 698 107 HOH HOH . 
E 5 HOH A 93 699 108 HOH HOH . 
E 5 HOH A 94 700 109 HOH HOH . 
E 5 HOH A 95 701 110 HOH HOH . 
E 5 HOH A 96 702 111 HOH HOH . 
E 5 HOH A 97 703 112 HOH HOH . 
E 5 HOH A 98 704 114 HOH HOH . 
E 5 HOH A 99 705 115 HOH HOH . 
E 5 HOH A 100 706 118 HOH HOH . 
E 5 HOH A 101 707 119 HOH HOH . 
E 5 HOH A 102 708 120 HOH HOH . 
E 5 HOH A 103 709 122 HOH HOH . 
E 5 HOH A 104 710 124 HOH HOH . 
E 5 HOH A 105 711 127 HOH HOH . 
E 5 HOH A 106 712 128 HOH HOH . 
E 5 HOH A 107 713 129 HOH HOH . 
E 5 HOH A 108 714 130 HOH HOH . 
E 5 HOH A 109 715 131 HOH HOH . 
E 5 HOH A 110 716 132 HOH HOH . 
E 5 HOH A 111 717 137 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . C 3 -15.119 5.985 10.473 1 60.46 ? P PO4 605 A 1 
HETATM 2 O O1 PO4 . . . C 3 -14.414 5.581 9.166 1 59.27 ? O1 PO4 605 A 1 
HETATM 3 O O2 PO4 . . . C 3 -16.133 4.9 10.811 1 59.15 ? O2 PO4 605 A 1 
HETATM 4 O O3 PO4 . . . C 3 -15.861 7.294 10.288 1 60.67 ? O3 PO4 605 A 1 
HETATM 5 O O4 PO4 . . . C 3 -14.146 6.115 11.622 1 51.77 ? O4 PO4 605 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           5 
#