data_2Z98 # _model_server_result.job_id IzmcQFt5nz3bOcW4KOb3gw _model_server_result.datetime_utc '2024-11-25 08:57:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2z98 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 2Z98 # _exptl.entry_id 2Z98 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Z98 _cell.length_a 92.204 _cell.length_b 92.204 _cell.length_c 51.741 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Z98 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 51.741 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 79 n n N1 C10 FMN doub 80 n n C2 O2 FMN doub 81 n n C2 N3 FMN sing 82 n n N3 C4 FMN sing 83 n n N3 HN3 FMN sing 84 n n C4 O4 FMN doub 85 n n C4 C4A FMN sing 86 n n C4A N5 FMN doub 87 n n C4A C10 FMN sing 88 n n N5 C5A FMN sing 89 n n C5A C6 FMN doub 90 n y C5A C9A FMN sing 91 n y C6 C7 FMN sing 92 n y C6 H6 FMN sing 93 n n C7 C7M FMN sing 94 n n C7 C8 FMN doub 95 n y C7M HM71 FMN sing 96 n n C7M HM72 FMN sing 97 n n C7M HM73 FMN sing 98 n n C8 C8M FMN sing 99 n n C8 C9 FMN sing 100 n y C8M HM81 FMN sing 101 n n C8M HM82 FMN sing 102 n n C8M HM83 FMN sing 103 n n C9 C9A FMN doub 104 n y C9 H9 FMN sing 105 n n C9A N10 FMN sing 106 n n N10 C10 FMN sing 107 n n N10 C1' FMN sing 108 n n C1' C2' FMN sing 109 n n C1' "H1'1" FMN sing 110 n n C1' "H1'2" FMN sing 111 n n C2' O2' FMN sing 112 n n C2' C3' FMN sing 113 n n C2' H2' FMN sing 114 n n O2' HO2' FMN sing 115 n n C3' O3' FMN sing 116 n n C3' C4' FMN sing 117 n n C3' H3' FMN sing 118 n n O3' HO3' FMN sing 119 n n C4' O4' FMN sing 120 n n C4' C5' FMN sing 121 n n C4' H4' FMN sing 122 n n O4' HO4' FMN sing 123 n n C5' O5' FMN sing 124 n n C5' "H5'1" FMN sing 125 n n C5' "H5'2" FMN sing 126 n n O5' P FMN sing 127 n n P O1P FMN doub 128 n n P O2P FMN sing 129 n n P O3P FMN sing 130 n n O2P HOP2 FMN sing 131 n n O3P HOP3 FMN sing 132 n n # _atom_sites.entry_id 2Z98 _atom_sites.fract_transf_matrix[1][1] 0.010846 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010846 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019327 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 201 201 FMN FMN . C 3 EDO A 1 202 202 EDO EGL . D 3 EDO A 1 203 203 EDO EGL . E 4 HOH A 1 204 1 HOH HOH . E 4 HOH A 2 205 2 HOH HOH . E 4 HOH A 3 206 3 HOH HOH . E 4 HOH A 4 207 4 HOH HOH . E 4 HOH A 5 208 5 HOH HOH . E 4 HOH A 6 209 6 HOH HOH . E 4 HOH A 7 210 7 HOH HOH . E 4 HOH A 8 211 8 HOH HOH . E 4 HOH A 9 212 9 HOH HOH . E 4 HOH A 10 213 10 HOH HOH . E 4 HOH A 11 214 11 HOH HOH . E 4 HOH A 12 215 12 HOH HOH . E 4 HOH A 13 216 13 HOH HOH . E 4 HOH A 14 217 14 HOH HOH . E 4 HOH A 15 218 15 HOH HOH . E 4 HOH A 16 219 16 HOH HOH . E 4 HOH A 17 220 17 HOH HOH . E 4 HOH A 18 221 18 HOH HOH . E 4 HOH A 19 222 19 HOH HOH . E 4 HOH A 20 223 20 HOH HOH . E 4 HOH A 21 224 21 HOH HOH . E 4 HOH A 22 225 22 HOH HOH . E 4 HOH A 23 226 23 HOH HOH . E 4 HOH A 24 227 24 HOH HOH . E 4 HOH A 25 228 25 HOH HOH . E 4 HOH A 26 229 26 HOH HOH . E 4 HOH A 27 230 27 HOH HOH . E 4 HOH A 28 231 28 HOH HOH . E 4 HOH A 29 232 29 HOH HOH . E 4 HOH A 30 233 30 HOH HOH . E 4 HOH A 31 234 31 HOH HOH . E 4 HOH A 32 235 32 HOH HOH . E 4 HOH A 33 236 33 HOH HOH . E 4 HOH A 34 237 34 HOH HOH . E 4 HOH A 35 238 35 HOH HOH . E 4 HOH A 36 239 36 HOH HOH . E 4 HOH A 37 240 37 HOH HOH . E 4 HOH A 38 241 38 HOH HOH . E 4 HOH A 39 242 39 HOH HOH . E 4 HOH A 40 243 40 HOH HOH . E 4 HOH A 41 244 41 HOH HOH . E 4 HOH A 42 245 42 HOH HOH . E 4 HOH A 43 246 43 HOH HOH . E 4 HOH A 44 247 44 HOH HOH . E 4 HOH A 45 248 45 HOH HOH . E 4 HOH A 46 249 46 HOH HOH . E 4 HOH A 47 250 47 HOH HOH . E 4 HOH A 48 251 48 HOH HOH . E 4 HOH A 49 252 49 HOH HOH . E 4 HOH A 50 253 50 HOH HOH . E 4 HOH A 51 254 51 HOH HOH . E 4 HOH A 52 255 52 HOH HOH . E 4 HOH A 53 256 53 HOH HOH . E 4 HOH A 54 257 54 HOH HOH . E 4 HOH A 55 258 55 HOH HOH . E 4 HOH A 56 259 56 HOH HOH . E 4 HOH A 57 260 57 HOH HOH . E 4 HOH A 58 261 58 HOH HOH . E 4 HOH A 59 262 59 HOH HOH . E 4 HOH A 60 263 60 HOH HOH . E 4 HOH A 61 264 61 HOH HOH . E 4 HOH A 62 265 62 HOH HOH . E 4 HOH A 63 266 63 HOH HOH . E 4 HOH A 64 267 64 HOH HOH . E 4 HOH A 65 268 65 HOH HOH . E 4 HOH A 66 269 66 HOH HOH . E 4 HOH A 67 270 67 HOH HOH . E 4 HOH A 68 271 68 HOH HOH . E 4 HOH A 69 272 69 HOH HOH . E 4 HOH A 70 273 70 HOH HOH . E 4 HOH A 71 274 71 HOH HOH . E 4 HOH A 72 275 72 HOH HOH . E 4 HOH A 73 276 73 HOH HOH . E 4 HOH A 74 277 74 HOH HOH . E 4 HOH A 75 278 75 HOH HOH . E 4 HOH A 76 279 76 HOH HOH . E 4 HOH A 77 280 77 HOH HOH . E 4 HOH A 78 281 78 HOH HOH . E 4 HOH A 79 282 79 HOH HOH . E 4 HOH A 80 283 80 HOH HOH . E 4 HOH A 81 284 81 HOH HOH . E 4 HOH A 82 285 82 HOH HOH . E 4 HOH A 83 286 83 HOH HOH . E 4 HOH A 84 287 84 HOH HOH . E 4 HOH A 85 288 85 HOH HOH . E 4 HOH A 86 289 86 HOH HOH . E 4 HOH A 87 290 87 HOH HOH . E 4 HOH A 88 291 88 HOH HOH . E 4 HOH A 89 292 89 HOH HOH . E 4 HOH A 90 293 90 HOH HOH . E 4 HOH A 91 294 91 HOH HOH . E 4 HOH A 92 295 92 HOH HOH . E 4 HOH A 93 296 93 HOH HOH . E 4 HOH A 94 297 94 HOH HOH . E 4 HOH A 95 298 95 HOH HOH . E 4 HOH A 96 299 96 HOH HOH . E 4 HOH A 97 300 97 HOH HOH . E 4 HOH A 98 301 98 HOH HOH . E 4 HOH A 99 302 99 HOH HOH . E 4 HOH A 100 303 100 HOH HOH . E 4 HOH A 101 304 101 HOH HOH . E 4 HOH A 102 305 102 HOH HOH . E 4 HOH A 103 306 103 HOH HOH . E 4 HOH A 104 307 104 HOH HOH . E 4 HOH A 105 308 105 HOH HOH . E 4 HOH A 106 309 106 HOH HOH . E 4 HOH A 107 310 107 HOH HOH . E 4 HOH A 108 311 108 HOH HOH . E 4 HOH A 109 312 109 HOH HOH . E 4 HOH A 110 313 110 HOH HOH . E 4 HOH A 111 314 111 HOH HOH . E 4 HOH A 112 315 112 HOH HOH . E 4 HOH A 113 316 113 HOH HOH . E 4 HOH A 114 317 114 HOH HOH . E 4 HOH A 115 318 115 HOH HOH . E 4 HOH A 116 319 116 HOH HOH . E 4 HOH A 117 320 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 25.251 25.01 12.007 1 10.26 ? N1 FMN 201 A 1 HETATM 2 C C2 FMN . . . B 2 24.649 24.041 12.579 1 9.2 ? C2 FMN 201 A 1 HETATM 3 O O2 FMN . . . B 2 23.664 23.501 12.23 1 13.33 ? O2 FMN 201 A 1 HETATM 4 N N3 FMN . . . B 2 25.252 23.492 13.781 1 10.35 ? N3 FMN 201 A 1 HETATM 5 C C4 FMN . . . B 2 26.383 24.013 14.247 1 7.99 ? C4 FMN 201 A 1 HETATM 6 O O4 FMN . . . B 2 26.855 23.503 15.385 1 11.43 ? O4 FMN 201 A 1 HETATM 7 C C4A FMN . . . B 2 27.143 24.963 13.628 1 7.95 ? C4A FMN 201 A 1 HETATM 8 N N5 FMN . . . B 2 28.247 25.487 14.028 1 7.69 ? N5 FMN 201 A 1 HETATM 9 C C5A FMN . . . B 2 28.876 26.512 13.469 1 8.77 ? C5A FMN 201 A 1 HETATM 10 C C6 FMN . . . B 2 30.011 27.127 13.905 1 10.4 ? C6 FMN 201 A 1 HETATM 11 C C7 FMN . . . B 2 30.577 28.299 13.478 1 13.21 ? C7 FMN 201 A 1 HETATM 12 C C7M FMN . . . B 2 31.78 29.012 14.068 1 13.63 ? C7M FMN 201 A 1 HETATM 13 C C8 FMN . . . B 2 29.854 28.987 12.369 1 10.64 ? C8 FMN 201 A 1 HETATM 14 C C8M FMN . . . B 2 30.376 30.208 11.828 1 13.02 ? C8M FMN 201 A 1 HETATM 15 C C9 FMN . . . B 2 28.785 28.367 11.877 1 10.6 ? C9 FMN 201 A 1 HETATM 16 C C9A FMN . . . B 2 28.177 27.272 12.356 1 9.24 ? C9A FMN 201 A 1 HETATM 17 N N10 FMN . . . B 2 27.046 26.679 11.933 1 8.85 ? N10 FMN 201 A 1 HETATM 18 C C10 FMN . . . B 2 26.396 25.588 12.393 1 6.8 ? C10 FMN 201 A 1 HETATM 19 C C1' FMN . . . B 2 26.316 27.425 10.802 1 9.69 ? C1' FMN 201 A 1 HETATM 20 C C2' FMN . . . B 2 25.404 28.532 11.436 1 10.02 ? C2' FMN 201 A 1 HETATM 21 O O2' FMN . . . B 2 24.479 28.062 12.396 1 10.63 ? O2' FMN 201 A 1 HETATM 22 C C3' FMN . . . B 2 24.656 29.166 10.251 1 10.94 ? C3' FMN 201 A 1 HETATM 23 O O3' FMN . . . B 2 25.603 29.767 9.4 1 12.87 ? O3' FMN 201 A 1 HETATM 24 C C4' FMN . . . B 2 23.752 30.235 10.897 1 10.86 ? C4' FMN 201 A 1 HETATM 25 O O4' FMN . . . B 2 23.062 30.924 9.766 1 13.31 ? O4' FMN 201 A 1 HETATM 26 C C5' FMN . . . B 2 24.48 31.238 11.681 1 10.56 ? C5' FMN 201 A 1 HETATM 27 O O5' FMN . . . B 2 23.633 32.457 12.009 1 10.04 ? O5' FMN 201 A 1 HETATM 28 P P FMN . . . B 2 24.323 33.76 11.677 1 10.88 ? P FMN 201 A 1 HETATM 29 O O1P FMN . . . B 2 23.24 34.804 12.168 1 9.99 ? O1P FMN 201 A 1 HETATM 30 O O2P FMN . . . B 2 25.665 33.98 12.393 1 12.17 ? O2P FMN 201 A 1 HETATM 31 O O3P FMN . . . B 2 24.472 33.916 10.153 1 12.26 ? O3P FMN 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #