data_2Z98 # _model_server_result.job_id UhyNNHMICUXVYu93eQLzVw _model_server_result.datetime_utc '2024-11-01 16:35:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2z98 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 2Z98 # _exptl.entry_id 2Z98 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Z98 _cell.length_a 92.204 _cell.length_b 92.204 _cell.length_c 51.741 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Z98 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 51.741 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 2Z98 _atom_sites.fract_transf_matrix[1][1] 0.010846 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010846 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019327 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 201 201 FMN FMN . C 3 EDO A 1 202 202 EDO EGL . D 3 EDO A 1 203 203 EDO EGL . E 4 HOH A 1 204 1 HOH HOH . E 4 HOH A 2 205 2 HOH HOH . E 4 HOH A 3 206 3 HOH HOH . E 4 HOH A 4 207 4 HOH HOH . E 4 HOH A 5 208 5 HOH HOH . E 4 HOH A 6 209 6 HOH HOH . E 4 HOH A 7 210 7 HOH HOH . E 4 HOH A 8 211 8 HOH HOH . E 4 HOH A 9 212 9 HOH HOH . E 4 HOH A 10 213 10 HOH HOH . E 4 HOH A 11 214 11 HOH HOH . E 4 HOH A 12 215 12 HOH HOH . E 4 HOH A 13 216 13 HOH HOH . E 4 HOH A 14 217 14 HOH HOH . E 4 HOH A 15 218 15 HOH HOH . E 4 HOH A 16 219 16 HOH HOH . E 4 HOH A 17 220 17 HOH HOH . E 4 HOH A 18 221 18 HOH HOH . E 4 HOH A 19 222 19 HOH HOH . E 4 HOH A 20 223 20 HOH HOH . E 4 HOH A 21 224 21 HOH HOH . E 4 HOH A 22 225 22 HOH HOH . E 4 HOH A 23 226 23 HOH HOH . E 4 HOH A 24 227 24 HOH HOH . E 4 HOH A 25 228 25 HOH HOH . E 4 HOH A 26 229 26 HOH HOH . E 4 HOH A 27 230 27 HOH HOH . E 4 HOH A 28 231 28 HOH HOH . E 4 HOH A 29 232 29 HOH HOH . E 4 HOH A 30 233 30 HOH HOH . E 4 HOH A 31 234 31 HOH HOH . E 4 HOH A 32 235 32 HOH HOH . E 4 HOH A 33 236 33 HOH HOH . E 4 HOH A 34 237 34 HOH HOH . E 4 HOH A 35 238 35 HOH HOH . E 4 HOH A 36 239 36 HOH HOH . E 4 HOH A 37 240 37 HOH HOH . E 4 HOH A 38 241 38 HOH HOH . E 4 HOH A 39 242 39 HOH HOH . E 4 HOH A 40 243 40 HOH HOH . E 4 HOH A 41 244 41 HOH HOH . E 4 HOH A 42 245 42 HOH HOH . E 4 HOH A 43 246 43 HOH HOH . E 4 HOH A 44 247 44 HOH HOH . E 4 HOH A 45 248 45 HOH HOH . E 4 HOH A 46 249 46 HOH HOH . E 4 HOH A 47 250 47 HOH HOH . E 4 HOH A 48 251 48 HOH HOH . E 4 HOH A 49 252 49 HOH HOH . E 4 HOH A 50 253 50 HOH HOH . E 4 HOH A 51 254 51 HOH HOH . E 4 HOH A 52 255 52 HOH HOH . E 4 HOH A 53 256 53 HOH HOH . E 4 HOH A 54 257 54 HOH HOH . E 4 HOH A 55 258 55 HOH HOH . E 4 HOH A 56 259 56 HOH HOH . E 4 HOH A 57 260 57 HOH HOH . E 4 HOH A 58 261 58 HOH HOH . E 4 HOH A 59 262 59 HOH HOH . E 4 HOH A 60 263 60 HOH HOH . E 4 HOH A 61 264 61 HOH HOH . E 4 HOH A 62 265 62 HOH HOH . E 4 HOH A 63 266 63 HOH HOH . E 4 HOH A 64 267 64 HOH HOH . E 4 HOH A 65 268 65 HOH HOH . E 4 HOH A 66 269 66 HOH HOH . E 4 HOH A 67 270 67 HOH HOH . E 4 HOH A 68 271 68 HOH HOH . E 4 HOH A 69 272 69 HOH HOH . E 4 HOH A 70 273 70 HOH HOH . E 4 HOH A 71 274 71 HOH HOH . E 4 HOH A 72 275 72 HOH HOH . E 4 HOH A 73 276 73 HOH HOH . E 4 HOH A 74 277 74 HOH HOH . E 4 HOH A 75 278 75 HOH HOH . E 4 HOH A 76 279 76 HOH HOH . E 4 HOH A 77 280 77 HOH HOH . E 4 HOH A 78 281 78 HOH HOH . E 4 HOH A 79 282 79 HOH HOH . E 4 HOH A 80 283 80 HOH HOH . E 4 HOH A 81 284 81 HOH HOH . E 4 HOH A 82 285 82 HOH HOH . E 4 HOH A 83 286 83 HOH HOH . E 4 HOH A 84 287 84 HOH HOH . E 4 HOH A 85 288 85 HOH HOH . E 4 HOH A 86 289 86 HOH HOH . E 4 HOH A 87 290 87 HOH HOH . E 4 HOH A 88 291 88 HOH HOH . E 4 HOH A 89 292 89 HOH HOH . E 4 HOH A 90 293 90 HOH HOH . E 4 HOH A 91 294 91 HOH HOH . E 4 HOH A 92 295 92 HOH HOH . E 4 HOH A 93 296 93 HOH HOH . E 4 HOH A 94 297 94 HOH HOH . E 4 HOH A 95 298 95 HOH HOH . E 4 HOH A 96 299 96 HOH HOH . E 4 HOH A 97 300 97 HOH HOH . E 4 HOH A 98 301 98 HOH HOH . E 4 HOH A 99 302 99 HOH HOH . E 4 HOH A 100 303 100 HOH HOH . E 4 HOH A 101 304 101 HOH HOH . E 4 HOH A 102 305 102 HOH HOH . E 4 HOH A 103 306 103 HOH HOH . E 4 HOH A 104 307 104 HOH HOH . E 4 HOH A 105 308 105 HOH HOH . E 4 HOH A 106 309 106 HOH HOH . E 4 HOH A 107 310 107 HOH HOH . E 4 HOH A 108 311 108 HOH HOH . E 4 HOH A 109 312 109 HOH HOH . E 4 HOH A 110 313 110 HOH HOH . E 4 HOH A 111 314 111 HOH HOH . E 4 HOH A 112 315 112 HOH HOH . E 4 HOH A 113 316 113 HOH HOH . E 4 HOH A 114 317 114 HOH HOH . E 4 HOH A 115 318 115 HOH HOH . E 4 HOH A 116 319 116 HOH HOH . E 4 HOH A 117 320 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 10.057 28.973 13.051 1 16.43 ? C1 EDO 203 A 1 HETATM 2 O O1 EDO . . . D 3 9.397 28.126 13.819 1 35.03 ? O1 EDO 203 A 1 HETATM 3 C C2 EDO . . . D 3 9.846 28.992 11.49 1 22.08 ? C2 EDO 203 A 1 HETATM 4 O O2 EDO . . . D 3 9.78 27.538 11.291 1 38.5 ? O2 EDO 203 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #