data_2Z9C # _model_server_result.job_id CM6pvMrktN-YsYpwdJRQXQ _model_server_result.datetime_utc '2024-11-25 09:28:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2z9c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 2Z9C # _exptl.entry_id 2Z9C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Z9C _cell.length_a 95.5 _cell.length_b 95.5 _cell.length_c 54.497 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Z9C _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 95.5 95.5 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 110 n n N1 C10 FMN doub 111 n n C2 O2 FMN doub 112 n n C2 N3 FMN sing 113 n n N3 C4 FMN sing 114 n n N3 HN3 FMN sing 115 n n C4 O4 FMN doub 116 n n C4 C4A FMN sing 117 n n C4A N5 FMN doub 118 n n C4A C10 FMN sing 119 n n N5 C5A FMN sing 120 n n C5A C6 FMN doub 121 n y C5A C9A FMN sing 122 n y C6 C7 FMN sing 123 n y C6 H6 FMN sing 124 n n C7 C7M FMN sing 125 n n C7 C8 FMN doub 126 n y C7M HM71 FMN sing 127 n n C7M HM72 FMN sing 128 n n C7M HM73 FMN sing 129 n n C8 C8M FMN sing 130 n n C8 C9 FMN sing 131 n y C8M HM81 FMN sing 132 n n C8M HM82 FMN sing 133 n n C8M HM83 FMN sing 134 n n C9 C9A FMN doub 135 n y C9 H9 FMN sing 136 n n C9A N10 FMN sing 137 n n N10 C10 FMN sing 138 n n N10 C1' FMN sing 139 n n C1' C2' FMN sing 140 n n C1' "H1'1" FMN sing 141 n n C1' "H1'2" FMN sing 142 n n C2' O2' FMN sing 143 n n C2' C3' FMN sing 144 n n C2' H2' FMN sing 145 n n O2' HO2' FMN sing 146 n n C3' O3' FMN sing 147 n n C3' C4' FMN sing 148 n n C3' H3' FMN sing 149 n n O3' HO3' FMN sing 150 n n C4' O4' FMN sing 151 n n C4' C5' FMN sing 152 n n C4' H4' FMN sing 153 n n O4' HO4' FMN sing 154 n n C5' O5' FMN sing 155 n n C5' "H5'1" FMN sing 156 n n C5' "H5'2" FMN sing 157 n n O5' P FMN sing 158 n n P O1P FMN doub 159 n n P O2P FMN sing 160 n n P O3P FMN sing 161 n n O2P HOP2 FMN sing 162 n n O3P HOP3 FMN sing 163 n n # _atom_sites.entry_id 2Z9C _atom_sites.fract_transf_matrix[1][1] 0.010471 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010471 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01835 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 201 201 FMN FMN . C 3 DTC A 1 202 202 DTC DTC . D 4 GOL A 1 203 203 GOL GOL . E 5 HOH A 1 204 1 HOH HOH . E 5 HOH A 2 205 2 HOH HOH . E 5 HOH A 3 206 3 HOH HOH . E 5 HOH A 4 207 4 HOH HOH . E 5 HOH A 5 208 5 HOH HOH . E 5 HOH A 6 209 6 HOH HOH . E 5 HOH A 7 210 7 HOH HOH . E 5 HOH A 8 211 8 HOH HOH . E 5 HOH A 9 212 9 HOH HOH . E 5 HOH A 10 213 10 HOH HOH . E 5 HOH A 11 214 11 HOH HOH . E 5 HOH A 12 215 12 HOH HOH . E 5 HOH A 13 216 13 HOH HOH . E 5 HOH A 14 217 14 HOH HOH . E 5 HOH A 15 218 15 HOH HOH . E 5 HOH A 16 219 16 HOH HOH . E 5 HOH A 17 220 17 HOH HOH . E 5 HOH A 18 221 18 HOH HOH . E 5 HOH A 19 222 19 HOH HOH . E 5 HOH A 20 223 20 HOH HOH . E 5 HOH A 21 224 21 HOH HOH . E 5 HOH A 22 225 22 HOH HOH . E 5 HOH A 23 226 23 HOH HOH . E 5 HOH A 24 227 24 HOH HOH . E 5 HOH A 25 228 25 HOH HOH . E 5 HOH A 26 229 26 HOH HOH . E 5 HOH A 27 230 27 HOH HOH . E 5 HOH A 28 231 28 HOH HOH . E 5 HOH A 29 232 29 HOH HOH . E 5 HOH A 30 233 30 HOH HOH . E 5 HOH A 31 234 31 HOH HOH . E 5 HOH A 32 235 32 HOH HOH . E 5 HOH A 33 236 33 HOH HOH . E 5 HOH A 34 237 34 HOH HOH . E 5 HOH A 35 238 35 HOH HOH . E 5 HOH A 36 239 36 HOH HOH . E 5 HOH A 37 240 37 HOH HOH . E 5 HOH A 38 241 38 HOH HOH . E 5 HOH A 39 242 39 HOH HOH . E 5 HOH A 40 243 40 HOH HOH . E 5 HOH A 41 244 41 HOH HOH . E 5 HOH A 42 245 42 HOH HOH . E 5 HOH A 43 246 43 HOH HOH . E 5 HOH A 44 247 44 HOH HOH . E 5 HOH A 45 248 45 HOH HOH . E 5 HOH A 46 249 46 HOH HOH . E 5 HOH A 47 250 47 HOH HOH . E 5 HOH A 48 251 48 HOH HOH . E 5 HOH A 49 252 49 HOH HOH . E 5 HOH A 50 253 50 HOH HOH . E 5 HOH A 51 254 51 HOH HOH . E 5 HOH A 52 255 52 HOH HOH . E 5 HOH A 53 256 53 HOH HOH . E 5 HOH A 54 257 54 HOH HOH . E 5 HOH A 55 258 55 HOH HOH . E 5 HOH A 56 259 56 HOH HOH . E 5 HOH A 57 260 57 HOH HOH . E 5 HOH A 58 261 58 HOH HOH . E 5 HOH A 59 262 59 HOH HOH . E 5 HOH A 60 263 60 HOH HOH . E 5 HOH A 61 264 61 HOH HOH . E 5 HOH A 62 265 62 HOH HOH . E 5 HOH A 63 266 63 HOH HOH . E 5 HOH A 64 267 64 HOH HOH . E 5 HOH A 65 268 65 HOH HOH . E 5 HOH A 66 269 66 HOH HOH . E 5 HOH A 67 270 67 HOH HOH . E 5 HOH A 68 271 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 71.135 6.756 -6.461 1 29.19 ? N1 FMN 201 A 1 HETATM 2 C C2 FMN . . . B 2 72.482 6.412 -6.498 1 29.24 ? C2 FMN 201 A 1 HETATM 3 O O2 FMN . . . B 2 72.842 5.245 -6.326 1 28.67 ? O2 FMN 201 A 1 HETATM 4 N N3 FMN . . . B 2 73.428 7.383 -6.755 1 28.75 ? N3 FMN 201 A 1 HETATM 5 C C4 FMN . . . B 2 73.048 8.698 -6.946 1 29.06 ? C4 FMN 201 A 1 HETATM 6 O O4 FMN . . . B 2 73.914 9.576 -6.854 1 29.55 ? O4 FMN 201 A 1 HETATM 7 C C4A FMN . . . B 2 71.69 9.048 -6.899 1 29.26 ? C4A FMN 201 A 1 HETATM 8 N N5 FMN . . . B 2 71.293 10.353 -7.1 1 28.11 ? N5 FMN 201 A 1 HETATM 9 C C5A FMN . . . B 2 69.951 10.691 -7.07 1 29.18 ? C5A FMN 201 A 1 HETATM 10 C C6 FMN . . . B 2 69.585 12.027 -7.26 1 28.65 ? C6 FMN 201 A 1 HETATM 11 C C7 FMN . . . B 2 68.25 12.42 -7.208 1 29.31 ? C7 FMN 201 A 1 HETATM 12 C C7M FMN . . . B 2 67.913 13.906 -7.283 1 27.15 ? C7M FMN 201 A 1 HETATM 13 C C8 FMN . . . B 2 67.263 11.458 -6.972 1 29.11 ? C8 FMN 201 A 1 HETATM 14 C C8M FMN . . . B 2 65.897 11.906 -6.52 1 29.07 ? C8M FMN 201 A 1 HETATM 15 C C9 FMN . . . B 2 67.622 10.121 -6.769 1 29.31 ? C9 FMN 201 A 1 HETATM 16 C C9A FMN . . . B 2 68.972 9.721 -6.803 1 29.05 ? C9A FMN 201 A 1 HETATM 17 N N10 FMN . . . B 2 69.374 8.4 -6.606 1 29.06 ? N10 FMN 201 A 1 HETATM 18 C C10 FMN . . . B 2 70.727 8.066 -6.66 1 29.44 ? C10 FMN 201 A 1 HETATM 19 C C1' FMN . . . B 2 68.427 7.353 -6.108 1 29.51 ? C1' FMN 201 A 1 HETATM 20 C C2' FMN . . . B 2 68.244 7.505 -4.603 1 30.72 ? C2' FMN 201 A 1 HETATM 21 O O2' FMN . . . B 2 69.483 7.403 -3.909 1 29.03 ? O2' FMN 201 A 1 HETATM 22 C C3' FMN . . . B 2 67.246 6.444 -4.126 1 31.96 ? C3' FMN 201 A 1 HETATM 23 O O3' FMN . . . B 2 66.017 6.706 -4.762 1 32.68 ? O3' FMN 201 A 1 HETATM 24 C C4' FMN . . . B 2 67.09 6.401 -2.596 1 32.84 ? C4' FMN 201 A 1 HETATM 25 O O4' FMN . . . B 2 66.022 5.564 -2.202 1 32.49 ? O4' FMN 201 A 1 HETATM 26 C C5' FMN . . . B 2 66.84 7.786 -2.037 1 33.57 ? C5' FMN 201 A 1 HETATM 27 O O5' FMN . . . B 2 66.378 7.718 -0.706 1 33.88 ? O5' FMN 201 A 1 HETATM 28 P P FMN . . . B 2 64.894 8.216 -0.379 1 34.92 ? P FMN 201 A 1 HETATM 29 O O1P FMN . . . B 2 64.724 8.037 1.108 1 33.45 ? O1P FMN 201 A 1 HETATM 30 O O2P FMN . . . B 2 64.72 9.654 -0.837 1 33.85 ? O2P FMN 201 A 1 HETATM 31 O O3P FMN . . . B 2 63.884 7.352 -1.095 1 34.39 ? O3P FMN 201 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #