data_2Z9D
#
_model_server_result.job_id            kE8opEIL_qwDngabEzfahQ 
_model_server_result.datetime_utc      '2024-11-25 10:53:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2z9d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    2Z9D 
#
_exptl.entry_id    2Z9D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2Z9D 
_cell.length_a            55.065 
_cell.length_b            89.892 
_cell.length_c            101.872 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2Z9D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 70 n n 
N1 C10 FMN doub 71 n n 
C2 O2 FMN doub 72 n n 
C2 N3 FMN sing 73 n n 
N3 C4 FMN sing 74 n n 
N3 HN3 FMN sing 75 n n 
C4 O4 FMN doub 76 n n 
C4 C4A FMN sing 77 n n 
C4A N5 FMN doub 78 n n 
C4A C10 FMN sing 79 n n 
N5 C5A FMN sing 80 n n 
C5A C6 FMN doub 81 n y 
C5A C9A FMN sing 82 n y 
C6 C7 FMN sing 83 n y 
C6 H6 FMN sing 84 n n 
C7 C7M FMN sing 85 n n 
C7 C8 FMN doub 86 n y 
C7M HM71 FMN sing 87 n n 
C7M HM72 FMN sing 88 n n 
C7M HM73 FMN sing 89 n n 
C8 C8M FMN sing 90 n n 
C8 C9 FMN sing 91 n y 
C8M HM81 FMN sing 92 n n 
C8M HM82 FMN sing 93 n n 
C8M HM83 FMN sing 94 n n 
C9 C9A FMN doub 95 n y 
C9 H9 FMN sing 96 n n 
C9A N10 FMN sing 97 n n 
N10 C10 FMN sing 98 n n 
N10 C1' FMN sing 99 n n 
C1' C2' FMN sing 100 n n 
C1' "H1'1" FMN sing 101 n n 
C1' "H1'2" FMN sing 102 n n 
C2' O2' FMN sing 103 n n 
C2' C3' FMN sing 104 n n 
C2' H2' FMN sing 105 n n 
O2' HO2' FMN sing 106 n n 
C3' O3' FMN sing 107 n n 
C3' C4' FMN sing 108 n n 
C3' H3' FMN sing 109 n n 
O3' HO3' FMN sing 110 n n 
C4' O4' FMN sing 111 n n 
C4' C5' FMN sing 112 n n 
C4' H4' FMN sing 113 n n 
O4' HO4' FMN sing 114 n n 
C5' O5' FMN sing 115 n n 
C5' "H5'1" FMN sing 116 n n 
C5' "H5'2" FMN sing 117 n n 
O5' P FMN sing 118 n n 
P O1P FMN doub 119 n n 
P O2P FMN sing 120 n n 
P O3P FMN sing 121 n n 
O2P HOP2 FMN sing 122 n n 
O3P HOP3 FMN sing 123 n n 
#
_atom_sites.entry_id                     2Z9D 
_atom_sites.fract_transf_matrix[1][1]    0.01816 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011124 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009816 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FMN A 1 401 401 FMN FMN . 
D 2 FMN B 1 402 402 FMN FMN . 
E 3 HOH A 1 402 1 HOH HOH . 
E 3 HOH A 2 403 2 HOH HOH . 
E 3 HOH A 3 404 3 HOH HOH . 
E 3 HOH A 4 405 4 HOH HOH . 
E 3 HOH A 5 406 5 HOH HOH . 
E 3 HOH A 6 407 6 HOH HOH . 
E 3 HOH A 7 408 7 HOH HOH . 
E 3 HOH A 8 409 8 HOH HOH . 
E 3 HOH A 9 410 9 HOH HOH . 
E 3 HOH A 10 411 10 HOH HOH . 
E 3 HOH A 11 412 12 HOH HOH . 
E 3 HOH A 12 413 13 HOH HOH . 
E 3 HOH A 13 414 14 HOH HOH . 
E 3 HOH A 14 415 15 HOH HOH . 
E 3 HOH A 15 416 16 HOH HOH . 
E 3 HOH A 16 417 17 HOH HOH . 
E 3 HOH A 17 418 18 HOH HOH . 
E 3 HOH A 18 419 19 HOH HOH . 
E 3 HOH A 19 420 20 HOH HOH . 
E 3 HOH A 20 421 21 HOH HOH . 
E 3 HOH A 21 422 22 HOH HOH . 
E 3 HOH A 22 423 23 HOH HOH . 
E 3 HOH A 23 424 24 HOH HOH . 
E 3 HOH A 24 425 25 HOH HOH . 
E 3 HOH A 25 426 26 HOH HOH . 
E 3 HOH A 26 427 27 HOH HOH . 
E 3 HOH A 27 428 28 HOH HOH . 
E 3 HOH A 28 429 29 HOH HOH . 
E 3 HOH A 29 430 30 HOH HOH . 
E 3 HOH A 30 431 31 HOH HOH . 
E 3 HOH A 31 432 32 HOH HOH . 
E 3 HOH A 32 433 33 HOH HOH . 
E 3 HOH A 33 434 34 HOH HOH . 
E 3 HOH A 34 435 35 HOH HOH . 
E 3 HOH A 35 436 36 HOH HOH . 
E 3 HOH A 36 437 37 HOH HOH . 
E 3 HOH A 37 438 38 HOH HOH . 
E 3 HOH A 38 439 39 HOH HOH . 
E 3 HOH A 39 440 40 HOH HOH . 
E 3 HOH A 40 441 43 HOH HOH . 
E 3 HOH A 41 442 44 HOH HOH . 
E 3 HOH A 42 443 45 HOH HOH . 
E 3 HOH A 43 444 46 HOH HOH . 
E 3 HOH A 44 445 47 HOH HOH . 
E 3 HOH A 45 446 48 HOH HOH . 
E 3 HOH A 46 447 49 HOH HOH . 
E 3 HOH A 47 448 50 HOH HOH . 
E 3 HOH A 48 449 51 HOH HOH . 
E 3 HOH A 49 450 52 HOH HOH . 
E 3 HOH A 50 451 53 HOH HOH . 
E 3 HOH A 51 452 54 HOH HOH . 
E 3 HOH A 52 453 55 HOH HOH . 
E 3 HOH A 53 454 56 HOH HOH . 
E 3 HOH A 54 455 58 HOH HOH . 
E 3 HOH A 55 456 59 HOH HOH . 
E 3 HOH A 56 457 60 HOH HOH . 
E 3 HOH A 57 458 62 HOH HOH . 
E 3 HOH A 58 459 63 HOH HOH . 
E 3 HOH A 59 460 64 HOH HOH . 
E 3 HOH A 60 461 65 HOH HOH . 
E 3 HOH A 61 462 66 HOH HOH . 
E 3 HOH A 62 463 68 HOH HOH . 
E 3 HOH A 63 464 69 HOH HOH . 
E 3 HOH A 64 465 70 HOH HOH . 
E 3 HOH A 65 466 71 HOH HOH . 
E 3 HOH A 66 467 72 HOH HOH . 
E 3 HOH A 67 468 73 HOH HOH . 
E 3 HOH A 68 469 74 HOH HOH . 
E 3 HOH A 69 470 85 HOH HOH . 
E 3 HOH A 70 471 136 HOH HOH . 
E 3 HOH A 71 472 149 HOH HOH . 
E 3 HOH A 72 473 151 HOH HOH . 
E 3 HOH A 73 474 152 HOH HOH . 
F 3 HOH B 1 403 11 HOH HOH . 
F 3 HOH B 2 404 41 HOH HOH . 
F 3 HOH B 3 405 42 HOH HOH . 
F 3 HOH B 4 406 57 HOH HOH . 
F 3 HOH B 5 407 61 HOH HOH . 
F 3 HOH B 6 408 67 HOH HOH . 
F 3 HOH B 7 409 75 HOH HOH . 
F 3 HOH B 8 410 76 HOH HOH . 
F 3 HOH B 9 411 77 HOH HOH . 
F 3 HOH B 10 412 78 HOH HOH . 
F 3 HOH B 11 413 79 HOH HOH . 
F 3 HOH B 12 414 80 HOH HOH . 
F 3 HOH B 13 415 81 HOH HOH . 
F 3 HOH B 14 416 82 HOH HOH . 
F 3 HOH B 15 417 83 HOH HOH . 
F 3 HOH B 16 418 84 HOH HOH . 
F 3 HOH B 17 419 86 HOH HOH . 
F 3 HOH B 18 420 87 HOH HOH . 
F 3 HOH B 19 421 88 HOH HOH . 
F 3 HOH B 20 422 89 HOH HOH . 
F 3 HOH B 21 423 90 HOH HOH . 
F 3 HOH B 22 424 91 HOH HOH . 
F 3 HOH B 23 425 92 HOH HOH . 
F 3 HOH B 24 426 93 HOH HOH . 
F 3 HOH B 25 427 94 HOH HOH . 
F 3 HOH B 26 428 95 HOH HOH . 
F 3 HOH B 27 429 96 HOH HOH . 
F 3 HOH B 28 430 97 HOH HOH . 
F 3 HOH B 29 431 98 HOH HOH . 
F 3 HOH B 30 432 99 HOH HOH . 
F 3 HOH B 31 433 100 HOH HOH . 
F 3 HOH B 32 434 101 HOH HOH . 
F 3 HOH B 33 435 102 HOH HOH . 
F 3 HOH B 34 436 103 HOH HOH . 
F 3 HOH B 35 437 104 HOH HOH . 
F 3 HOH B 36 438 105 HOH HOH . 
F 3 HOH B 37 439 106 HOH HOH . 
F 3 HOH B 38 440 107 HOH HOH . 
F 3 HOH B 39 441 108 HOH HOH . 
F 3 HOH B 40 442 109 HOH HOH . 
F 3 HOH B 41 443 110 HOH HOH . 
F 3 HOH B 42 444 111 HOH HOH . 
F 3 HOH B 43 445 112 HOH HOH . 
F 3 HOH B 44 446 113 HOH HOH . 
F 3 HOH B 45 447 114 HOH HOH . 
F 3 HOH B 46 448 115 HOH HOH . 
F 3 HOH B 47 449 116 HOH HOH . 
F 3 HOH B 48 450 117 HOH HOH . 
F 3 HOH B 49 451 118 HOH HOH . 
F 3 HOH B 50 452 119 HOH HOH . 
F 3 HOH B 51 453 120 HOH HOH . 
F 3 HOH B 52 454 121 HOH HOH . 
F 3 HOH B 53 455 122 HOH HOH . 
F 3 HOH B 54 456 123 HOH HOH . 
F 3 HOH B 55 457 124 HOH HOH . 
F 3 HOH B 56 458 125 HOH HOH . 
F 3 HOH B 57 459 126 HOH HOH . 
F 3 HOH B 58 460 127 HOH HOH . 
F 3 HOH B 59 461 128 HOH HOH . 
F 3 HOH B 60 462 129 HOH HOH . 
F 3 HOH B 61 463 130 HOH HOH . 
F 3 HOH B 62 464 131 HOH HOH . 
F 3 HOH B 63 465 132 HOH HOH . 
F 3 HOH B 64 466 133 HOH HOH . 
F 3 HOH B 65 467 134 HOH HOH . 
F 3 HOH B 66 468 135 HOH HOH . 
F 3 HOH B 67 469 137 HOH HOH . 
F 3 HOH B 68 470 138 HOH HOH . 
F 3 HOH B 69 471 139 HOH HOH . 
F 3 HOH B 70 472 140 HOH HOH . 
F 3 HOH B 71 473 141 HOH HOH . 
F 3 HOH B 72 474 142 HOH HOH . 
F 3 HOH B 73 475 143 HOH HOH . 
F 3 HOH B 74 476 144 HOH HOH . 
F 3 HOH B 75 477 145 HOH HOH . 
F 3 HOH B 76 478 146 HOH HOH . 
F 3 HOH B 77 479 147 HOH HOH . 
F 3 HOH B 78 480 148 HOH HOH . 
F 3 HOH B 79 481 150 HOH HOH . 
F 3 HOH B 80 482 153 HOH HOH . 
F 3 HOH B 81 483 154 HOH HOH . 
F 3 HOH B 82 484 155 HOH HOH . 
F 3 HOH B 83 485 156 HOH HOH . 
F 3 HOH B 84 486 157 HOH HOH . 
F 3 HOH B 85 487 158 HOH HOH . 
F 3 HOH B 86 488 159 HOH HOH . 
F 3 HOH B 87 489 160 HOH HOH . 
F 3 HOH B 88 490 161 HOH HOH . 
F 3 HOH B 89 491 162 HOH HOH . 
F 3 HOH B 90 492 163 HOH HOH . 
F 3 HOH B 91 493 164 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . D 2 6.759 54.384 31.572 1 22.23 ? N1 FMN 402 B 1 
HETATM 2 C C2 FMN . . . D 2 8.004 54.89 31.788 1 22.68 ? C2 FMN 402 B 1 
HETATM 3 O O2 FMN . . . D 2 8.627 54.507 32.777 1 23.66 ? O2 FMN 402 B 1 
HETATM 4 N N3 FMN . . . D 2 8.542 55.835 30.953 1 22.46 ? N3 FMN 402 B 1 
HETATM 5 C C4 FMN . . . D 2 7.867 56.286 29.842 1 24.6 ? C4 FMN 402 B 1 
HETATM 6 O O4 FMN . . . D 2 8.265 57.368 29.318 1 22.58 ? O4 FMN 402 B 1 
HETATM 7 C C4A FMN . . . D 2 6.577 55.741 29.607 1 23.55 ? C4A FMN 402 B 1 
HETATM 8 N N5 FMN . . . D 2 5.825 56.108 28.503 1 23.62 ? N5 FMN 402 B 1 
HETATM 9 C C5A FMN . . . D 2 4.555 55.567 28.324 1 22.55 ? C5A FMN 402 B 1 
HETATM 10 C C6 FMN . . . D 2 3.805 55.976 27.243 1 22.28 ? C6 FMN 402 B 1 
HETATM 11 C C7 FMN . . . D 2 2.503 55.486 27.037 1 22.78 ? C7 FMN 402 B 1 
HETATM 12 C C7M FMN . . . D 2 1.61 56.212 26.044 1 26.01 ? C7M FMN 402 B 1 
HETATM 13 C C8 FMN . . . D 2 1.953 54.551 27.93 1 23.23 ? C8 FMN 402 B 1 
HETATM 14 C C8M FMN . . . D 2 0.482 54.135 27.85 1 19.77 ? C8M FMN 402 B 1 
HETATM 15 C C9 FMN . . . D 2 2.72 54.102 29.023 1 20.44 ? C9 FMN 402 B 1 
HETATM 16 C C9A FMN . . . D 2 4.012 54.623 29.236 1 22.66 ? C9A FMN 402 B 1 
HETATM 17 N N10 FMN . . . D 2 4.798 54.218 30.299 1 21.36 ? N10 FMN 402 B 1 
HETATM 18 C C10 FMN . . . D 2 6.047 54.78 30.478 1 22.74 ? C10 FMN 402 B 1 
HETATM 19 C C1' FMN . . . D 2 4.299 53.262 31.337 1 21.32 ? C1' FMN 402 B 1 
HETATM 20 C C2' FMN . . . D 2 3.399 54.02 32.304 1 20.07 ? C2' FMN 402 B 1 
HETATM 21 O O2' FMN . . . D 2 4.058 55.08 32.95 1 21.13 ? O2' FMN 402 B 1 
HETATM 22 C C3' FMN . . . D 2 2.814 53.115 33.351 1 21.02 ? C3' FMN 402 B 1 
HETATM 23 O O3' FMN . . . D 2 1.963 52.222 32.647 1 20.12 ? O3' FMN 402 B 1 
HETATM 24 C C4' FMN . . . D 2 2.008 53.878 34.408 1 21.94 ? C4' FMN 402 B 1 
HETATM 25 O O4' FMN . . . D 2 1.439 52.927 35.303 1 21.54 ? O4' FMN 402 B 1 
HETATM 26 C C5' FMN . . . D 2 0.89 54.718 33.785 1 21.56 ? C5' FMN 402 B 1 
HETATM 27 O O5' FMN . . . D 2 0.031 55.242 34.769 1 20.81 ? O5' FMN 402 B 1 
HETATM 28 P P FMN . . . D 2 -1.554 54.938 34.687 1 22.25 ? P FMN 402 B 1 
HETATM 29 O O1P FMN . . . D 2 -2.218 55.683 35.827 1 24.73 ? O1P FMN 402 B 1 
HETATM 30 O O2P FMN . . . D 2 -2.058 55.479 33.394 1 19.65 ? O2P FMN 402 B 1 
HETATM 31 O O3P FMN . . . D 2 -1.692 53.457 34.768 1 20.94 ? O3P FMN 402 B 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#