data_2Z9H # _model_server_result.job_id QeBi_byno_jo1GYtrucTOA _model_server_result.datetime_utc '2024-11-15 21:54:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2z9h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":105}' # _entry.id 2Z9H # _exptl.entry_id 2Z9H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-2-METHYLPENTANE-2,4-DIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.25 _cell.angle_gamma 90 _cell.entry_id 2Z9H _cell.length_a 71.281 _cell.length_b 66.54 _cell.length_c 72.004 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Z9H _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MRD _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-2-METHYLPENTANE-2,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MRD sing 237 n n C1 H1C1 MRD sing 238 n n C1 H1C2 MRD sing 239 n n C1 H1C3 MRD sing 240 n n C2 O2 MRD sing 241 n n C2 CM MRD sing 242 n n C2 C3 MRD sing 243 n n O2 H2 MRD sing 244 n n CM HMC1 MRD sing 245 n n CM HMC2 MRD sing 246 n n CM HMC3 MRD sing 247 n n C3 C4 MRD sing 248 n n C3 H3C1 MRD sing 249 n n C3 H3C2 MRD sing 250 n n C4 O4 MRD sing 251 n n C4 C5 MRD sing 252 n n C4 H4 MRD sing 253 n n O4 HA MRD sing 254 n n C5 H5C1 MRD sing 255 n n C5 H5C2 MRD sing 256 n n C5 H5C3 MRD sing 257 n n # _atom_sites.entry_id 2Z9H _atom_sites.fract_transf_matrix[1][1] 0.014029 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007858 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015029 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015918 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 MRD A 1 104 1 MRD MPD . H 2 MRD A 1 105 3 MRD MPD . I 2 MRD A 1 106 4 MRD MPD . J 3 CL D 1 104 1 CL CL . K 2 MRD F 1 104 2 MRD MPD . L 4 HOH A 1 107 6 HOH HOH . M 4 HOH B 1 104 1 HOH HOH . N 4 HOH C 1 104 11 HOH HOH . O 4 HOH D 1 105 2 HOH HOH . O 4 HOH D 2 106 4 HOH HOH . O 4 HOH D 3 107 10 HOH HOH . O 4 HOH D 4 108 15 HOH HOH . O 4 HOH D 5 109 16 HOH HOH . O 4 HOH D 6 110 17 HOH HOH . P 4 HOH E 1 104 3 HOH HOH . P 4 HOH E 2 105 7 HOH HOH . P 4 HOH E 3 106 8 HOH HOH . P 4 HOH E 4 107 13 HOH HOH . P 4 HOH E 5 108 14 HOH HOH . P 4 HOH E 6 109 18 HOH HOH . Q 4 HOH F 1 105 9 HOH HOH . Q 4 HOH F 2 106 12 HOH HOH . Q 4 HOH F 3 107 19 HOH HOH . Q 4 HOH F 4 108 20 HOH HOH . Q 4 HOH F 5 109 21 HOH HOH . Q 4 HOH F 6 110 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MRD . . . H 2 22.212 11.248 41.992 1 121.05 ? C1 MRD 105 A 1 HETATM 2 C C2 MRD . . . H 2 21.552 12.531 41.495 1 121.11 ? C2 MRD 105 A 1 HETATM 3 O O2 MRD . . . H 2 20.98 13.237 42.621 1 121.29 ? O2 MRD 105 A 1 HETATM 4 C CM MRD . . . H 2 22.615 13.432 40.874 1 120.93 ? CM MRD 105 A 1 HETATM 5 C C3 MRD . . . H 2 20.474 12.213 40.455 1 121.07 ? C3 MRD 105 A 1 HETATM 6 C C4 MRD . . . H 2 19.065 11.882 40.957 1 120.89 ? C4 MRD 105 A 1 HETATM 7 O O4 MRD . . . H 2 18.664 12.742 41.998 1 120.96 ? O4 MRD 105 A 1 HETATM 8 C C5 MRD . . . H 2 18.968 10.427 41.411 1 120.96 ? C5 MRD 105 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #