data_2Z9Y # _model_server_result.job_id pmiePFMJ6ymFZmNuEY_-NA _model_server_result.datetime_utc '2024-11-23 10:48:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2z9y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 2Z9Y # _exptl.entry_id 2Z9Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 400.592 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-hydroxypropane-1,2-diyl didecanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.92 _cell.angle_gamma 90 _cell.entry_id 2Z9Y _cell.length_a 39.754 _cell.length_b 75.013 _cell.length_c 41.753 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Z9Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H44 O5' _chem_comp.formula_weight 400.592 _chem_comp.id DDR _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-hydroxypropane-1,2-diyl didecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,2-DIDECANOYL-SN-GLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C30 C29 DDR sing 83 n n C29 C28 DDR sing 84 n n C8 C9 DDR sing 85 n n C8 C7 DDR sing 86 n n C10 C9 DDR sing 87 n n C28 C27 DDR sing 88 n n C7 C6 DDR sing 89 n n C6 C5 DDR sing 90 n n C27 C26 DDR sing 91 n n C5 C4 DDR sing 92 n n C26 C25 DDR sing 93 n n C4 C3 DDR sing 94 n n C25 C24 DDR sing 95 n n C3 C2 DDR sing 96 n n C2 C1 DDR sing 97 n n C24 C23 DDR sing 98 n n C23 C22 DDR sing 99 n n C1 O1 DDR doub 100 n n C1 O51 DDR sing 101 n n O21 C21 DDR doub 102 n n C22 C21 DDR sing 103 n n O51 C51 DDR sing 104 n n C21 O52 DDR sing 105 n n O52 C52 DDR sing 106 n n C51 C52 DDR sing 107 n n C52 C53 DDR sing 108 n n C53 O53 DDR sing 109 n n C22 H221 DDR sing 110 n n C22 H222 DDR sing 111 n n C23 H231 DDR sing 112 n n C23 H232 DDR sing 113 n n C24 H241 DDR sing 114 n n C24 H242 DDR sing 115 n n C25 H251 DDR sing 116 n n C25 H252 DDR sing 117 n n C26 H261 DDR sing 118 n n C26 H262 DDR sing 119 n n C27 H271 DDR sing 120 n n C27 H272 DDR sing 121 n n C28 H281 DDR sing 122 n n C28 H282 DDR sing 123 n n C29 H291 DDR sing 124 n n C29 H292 DDR sing 125 n n C30 H301 DDR sing 126 n n C30 H302 DDR sing 127 n n C30 H303 DDR sing 128 n n C52 H52 DDR sing 129 n n C53 H531 DDR sing 130 n n C53 H532 DDR sing 131 n n O53 HO53 DDR sing 132 n n C51 H511 DDR sing 133 n n C51 H512 DDR sing 134 n n C2 H21 DDR sing 135 n n C2 H22 DDR sing 136 n n C3 H31 DDR sing 137 n n C3 H32 DDR sing 138 n n C4 H41 DDR sing 139 n n C4 H42 DDR sing 140 n n C5 H51 DDR sing 141 n n C5 H52A DDR sing 142 n n C6 H61 DDR sing 143 n n C6 H62 DDR sing 144 n n C7 H71 DDR sing 145 n n C7 H72 DDR sing 146 n n C8 H81 DDR sing 147 n n C8 H82 DDR sing 148 n n C9 H91 DDR sing 149 n n C9 H92 DDR sing 150 n n C10 H101 DDR sing 151 n n C10 H102 DDR sing 152 n n C10 H103 DDR sing 153 n n # _atom_sites.entry_id 2Z9Y _atom_sites.fract_transf_matrix[1][1] 0.025155 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008133 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013331 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025171 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DDR A 1 1 1 DDR DDD . C 3 HOH A 1 599 4 HOH HOH . C 3 HOH A 2 600 5 HOH HOH . C 3 HOH A 3 601 6 HOH HOH . C 3 HOH A 4 602 7 HOH HOH . C 3 HOH A 5 603 8 HOH HOH . C 3 HOH A 6 604 9 HOH HOH . C 3 HOH A 7 605 10 HOH HOH . C 3 HOH A 8 606 11 HOH HOH . C 3 HOH A 9 607 13 HOH HOH . C 3 HOH A 10 608 14 HOH HOH . C 3 HOH A 11 609 15 HOH HOH . C 3 HOH A 12 610 16 HOH HOH . C 3 HOH A 13 611 17 HOH HOH . C 3 HOH A 14 612 18 HOH HOH . C 3 HOH A 15 613 20 HOH HOH . C 3 HOH A 16 614 21 HOH HOH . C 3 HOH A 17 615 22 HOH HOH . C 3 HOH A 18 616 23 HOH HOH . C 3 HOH A 19 617 24 HOH HOH . C 3 HOH A 20 618 26 HOH HOH . C 3 HOH A 21 619 27 HOH HOH . C 3 HOH A 22 620 28 HOH HOH . C 3 HOH A 23 621 29 HOH HOH . C 3 HOH A 24 622 30 HOH HOH . C 3 HOH A 25 623 31 HOH HOH . C 3 HOH A 26 624 32 HOH HOH . C 3 HOH A 27 625 33 HOH HOH . C 3 HOH A 28 626 34 HOH HOH . C 3 HOH A 29 627 35 HOH HOH . C 3 HOH A 30 628 36 HOH HOH . C 3 HOH A 31 629 37 HOH HOH . C 3 HOH A 32 630 38 HOH HOH . C 3 HOH A 33 631 39 HOH HOH . C 3 HOH A 34 632 41 HOH HOH . C 3 HOH A 35 633 42 HOH HOH . C 3 HOH A 36 634 43 HOH HOH . C 3 HOH A 37 635 45 HOH HOH . C 3 HOH A 38 636 47 HOH HOH . C 3 HOH A 39 637 50 HOH HOH . C 3 HOH A 40 638 51 HOH HOH . C 3 HOH A 41 639 52 HOH HOH . C 3 HOH A 42 640 53 HOH HOH . C 3 HOH A 43 641 55 HOH HOH . C 3 HOH A 44 642 57 HOH HOH . C 3 HOH A 45 643 58 HOH HOH . C 3 HOH A 46 644 60 HOH HOH . C 3 HOH A 47 645 61 HOH HOH . C 3 HOH A 48 646 65 HOH HOH . C 3 HOH A 49 647 66 HOH HOH . C 3 HOH A 50 648 68 HOH HOH . C 3 HOH A 51 649 70 HOH HOH . C 3 HOH A 52 650 71 HOH HOH . C 3 HOH A 53 651 76 HOH HOH . C 3 HOH A 54 652 77 HOH HOH . C 3 HOH A 55 653 80 HOH HOH . C 3 HOH A 56 654 81 HOH HOH . C 3 HOH A 57 655 82 HOH HOH . C 3 HOH A 58 656 90 HOH HOH . C 3 HOH A 59 657 91 HOH HOH . C 3 HOH A 60 658 92 HOH HOH . C 3 HOH A 61 659 93 HOH HOH . C 3 HOH A 62 660 94 HOH HOH . C 3 HOH A 63 661 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O21 DDR . . . B 2 -5.24 1.001 2.904 1 29.36 ? O21 DDR 1 A 1 HETATM 2 C C21 DDR . . . B 2 -6.163 1.607 3.484 1 33.77 ? C21 DDR 1 A 1 HETATM 3 C C22 DDR . . . B 2 -6.564 3.002 3.083 1 36.6 ? C22 DDR 1 A 1 HETATM 4 C C23 DDR . . . B 2 -6.594 3.181 1.572 1 35.89 ? C23 DDR 1 A 1 HETATM 5 C C24 DDR . . . B 2 -7.857 3.895 1.119 1 39.81 ? C24 DDR 1 A 1 HETATM 6 C C25 DDR . . . B 2 -7.703 4.508 -0.269 1 38.81 ? C25 DDR 1 A 1 HETATM 7 C C26 DDR . . . B 2 -7.969 3.472 -1.345 1 39.39 ? C26 DDR 1 A 1 HETATM 8 C C27 DDR . . . B 2 -8.328 4.15 -2.656 1 41.38 ? C27 DDR 1 A 1 HETATM 9 C C28 DDR . . . B 2 -8.794 3.135 -3.688 1 43.94 ? C28 DDR 1 A 1 HETATM 10 C C29 DDR . . . B 2 -8.693 3.765 -5.069 1 43.85 ? C29 DDR 1 A 1 HETATM 11 C C30 DDR . . . B 2 -8.388 2.73 -6.129 1 44.74 ? C30 DDR 1 A 1 HETATM 12 O O52 DDR . . . B 2 -6.926 1.063 4.603 1 35.98 ? O52 DDR 1 A 1 HETATM 13 C C52 DDR . . . B 2 -6.682 -0.246 5.122 1 35.52 ? C52 DDR 1 A 1 HETATM 14 C C53 DDR . . . B 2 -6.636 -0.179 6.649 1 36.49 ? C53 DDR 1 A 1 HETATM 15 O O53 DDR . . . B 2 -6.005 -1.332 7.238 1 34.72 ? O53 DDR 1 A 1 HETATM 16 C C51 DDR . . . B 2 -7.865 -1.124 4.752 1 35.37 ? C51 DDR 1 A 1 HETATM 17 O O51 DDR . . . B 2 -8.091 -1.04 3.345 1 35.59 ? O51 DDR 1 A 1 HETATM 18 C C1 DDR . . . B 2 -7.168 -1.721 2.475 1 35.21 ? C1 DDR 1 A 1 HETATM 19 O O1 DDR . . . B 2 -6.204 -2.285 2.962 1 36.09 ? O1 DDR 1 A 1 HETATM 20 C C2 DDR . . . B 2 -7.409 -1.759 0.992 1 32.87 ? C2 DDR 1 A 1 HETATM 21 C C3 DDR . . . B 2 -7.131 -0.393 0.404 1 35.95 ? C3 DDR 1 A 1 HETATM 22 C C4 DDR . . . B 2 -7.166 -0.459 -1.119 1 36.39 ? C4 DDR 1 A 1 HETATM 23 C C5 DDR . . . B 2 -8.619 -0.596 -1.573 1 38.09 ? C5 DDR 1 A 1 HETATM 24 C C6 DDR . . . B 2 -8.669 -0.809 -3.082 1 39.09 ? C6 DDR 1 A 1 HETATM 25 C C7 DDR . . . B 2 -9.908 -1.584 -3.502 1 39.58 ? C7 DDR 1 A 1 HETATM 26 C C8 DDR . . . B 2 -10.496 -1.04 -4.786 1 42.31 ? C8 DDR 1 A 1 HETATM 27 C C9 DDR . . . B 2 -11.388 0.142 -4.446 1 42.74 ? C9 DDR 1 A 1 HETATM 28 C C10 DDR . . . B 2 -12.834 -0.216 -4.655 1 42.83 ? C10 DDR 1 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 28 #