data_2Z9Z # _model_server_result.job_id nxGDjl7oLdAeniLyLxNRZQ _model_server_result.datetime_utc '2024-11-23 11:03:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2z9z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 2Z9Z # _exptl.entry_id 2Z9Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 400.592 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-hydroxypropane-1,2-diyl didecanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.85 _cell.angle_gamma 90 _cell.entry_id 2Z9Z _cell.length_a 40.768 _cell.length_b 75.374 _cell.length_c 42.439 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Z9Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H44 O5' _chem_comp.formula_weight 400.592 _chem_comp.id DDR _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-hydroxypropane-1,2-diyl didecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,2-DIDECANOYL-SN-GLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C30 C29 DDR sing 83 n n C29 C28 DDR sing 84 n n C8 C9 DDR sing 85 n n C8 C7 DDR sing 86 n n C10 C9 DDR sing 87 n n C28 C27 DDR sing 88 n n C7 C6 DDR sing 89 n n C6 C5 DDR sing 90 n n C27 C26 DDR sing 91 n n C5 C4 DDR sing 92 n n C26 C25 DDR sing 93 n n C4 C3 DDR sing 94 n n C25 C24 DDR sing 95 n n C3 C2 DDR sing 96 n n C2 C1 DDR sing 97 n n C24 C23 DDR sing 98 n n C23 C22 DDR sing 99 n n C1 O1 DDR doub 100 n n C1 O51 DDR sing 101 n n O21 C21 DDR doub 102 n n C22 C21 DDR sing 103 n n O51 C51 DDR sing 104 n n C21 O52 DDR sing 105 n n O52 C52 DDR sing 106 n n C51 C52 DDR sing 107 n n C52 C53 DDR sing 108 n n C53 O53 DDR sing 109 n n C22 H221 DDR sing 110 n n C22 H222 DDR sing 111 n n C23 H231 DDR sing 112 n n C23 H232 DDR sing 113 n n C24 H241 DDR sing 114 n n C24 H242 DDR sing 115 n n C25 H251 DDR sing 116 n n C25 H252 DDR sing 117 n n C26 H261 DDR sing 118 n n C26 H262 DDR sing 119 n n C27 H271 DDR sing 120 n n C27 H272 DDR sing 121 n n C28 H281 DDR sing 122 n n C28 H282 DDR sing 123 n n C29 H291 DDR sing 124 n n C29 H292 DDR sing 125 n n C30 H301 DDR sing 126 n n C30 H302 DDR sing 127 n n C30 H303 DDR sing 128 n n C52 H52 DDR sing 129 n n C53 H531 DDR sing 130 n n C53 H532 DDR sing 131 n n O53 HO53 DDR sing 132 n n C51 H511 DDR sing 133 n n C51 H512 DDR sing 134 n n C2 H21 DDR sing 135 n n C2 H22 DDR sing 136 n n C3 H31 DDR sing 137 n n C3 H32 DDR sing 138 n n C4 H41 DDR sing 139 n n C4 H42 DDR sing 140 n n C5 H51 DDR sing 141 n n C5 H52A DDR sing 142 n n C6 H61 DDR sing 143 n n C6 H62 DDR sing 144 n n C7 H71 DDR sing 145 n n C7 H72 DDR sing 146 n n C8 H81 DDR sing 147 n n C8 H82 DDR sing 148 n n C9 H91 DDR sing 149 n n C9 H92 DDR sing 150 n n C10 H101 DDR sing 151 n n C10 H102 DDR sing 152 n n C10 H103 DDR sing 153 n n # _atom_sites.entry_id 2Z9Z _atom_sites.fract_transf_matrix[1][1] 0.024529 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008376 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013267 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024899 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DDR A 1 1 1 DDR DDD . C 3 HOH A 1 599 1 HOH HOH . C 3 HOH A 2 600 3 HOH HOH . C 3 HOH A 3 601 4 HOH HOH . C 3 HOH A 4 602 5 HOH HOH . C 3 HOH A 5 603 6 HOH HOH . C 3 HOH A 6 604 7 HOH HOH . C 3 HOH A 7 605 8 HOH HOH . C 3 HOH A 8 606 10 HOH HOH . C 3 HOH A 9 607 11 HOH HOH . C 3 HOH A 10 608 12 HOH HOH . C 3 HOH A 11 609 13 HOH HOH . C 3 HOH A 12 610 14 HOH HOH . C 3 HOH A 13 611 15 HOH HOH . C 3 HOH A 14 612 16 HOH HOH . C 3 HOH A 15 613 18 HOH HOH . C 3 HOH A 16 614 21 HOH HOH . C 3 HOH A 17 615 22 HOH HOH . C 3 HOH A 18 616 25 HOH HOH . C 3 HOH A 19 617 26 HOH HOH . C 3 HOH A 20 618 27 HOH HOH . C 3 HOH A 21 619 28 HOH HOH . C 3 HOH A 22 620 30 HOH HOH . C 3 HOH A 23 621 31 HOH HOH . C 3 HOH A 24 622 32 HOH HOH . C 3 HOH A 25 623 34 HOH HOH . C 3 HOH A 26 624 36 HOH HOH . C 3 HOH A 27 625 38 HOH HOH . C 3 HOH A 28 626 39 HOH HOH . C 3 HOH A 29 627 43 HOH HOH . C 3 HOH A 30 628 44 HOH HOH . C 3 HOH A 31 629 45 HOH HOH . C 3 HOH A 32 630 46 HOH HOH . C 3 HOH A 33 631 48 HOH HOH . C 3 HOH A 34 632 50 HOH HOH . C 3 HOH A 35 633 51 HOH HOH . C 3 HOH A 36 634 54 HOH HOH . C 3 HOH A 37 635 55 HOH HOH . C 3 HOH A 38 636 66 HOH HOH . C 3 HOH A 39 637 68 HOH HOH . C 3 HOH A 40 638 70 HOH HOH . C 3 HOH A 41 639 84 HOH HOH . C 3 HOH A 42 640 89 HOH HOH . C 3 HOH A 43 641 94 HOH HOH . C 3 HOH A 44 642 102 HOH HOH . C 3 HOH A 45 643 103 HOH HOH . C 3 HOH A 46 644 113 HOH HOH . C 3 HOH A 47 645 115 HOH HOH . C 3 HOH A 48 646 121 HOH HOH . C 3 HOH A 49 647 123 HOH HOH . C 3 HOH A 50 648 203 HOH HOH . C 3 HOH A 51 649 304 HOH HOH . C 3 HOH A 52 650 305 HOH HOH . C 3 HOH A 53 651 306 HOH HOH . C 3 HOH A 54 652 307 HOH HOH . C 3 HOH A 55 653 308 HOH HOH . C 3 HOH A 56 654 309 HOH HOH . C 3 HOH A 57 655 310 HOH HOH . C 3 HOH A 58 656 311 HOH HOH . C 3 HOH A 59 657 312 HOH HOH . C 3 HOH A 60 658 313 HOH HOH . C 3 HOH A 61 659 314 HOH HOH . C 3 HOH A 62 660 315 HOH HOH . C 3 HOH A 63 661 316 HOH HOH . C 3 HOH A 64 662 317 HOH HOH . C 3 HOH A 65 663 318 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O21 DDR . . . B 2 2.245 -0.929 16.696 1 53.91 ? O21 DDR 1 A 1 HETATM 2 C C21 DDR . . . B 2 1.193 -1.567 16.642 1 53.03 ? C21 DDR 1 A 1 HETATM 3 C C22 DDR . . . B 2 0.531 -2.039 17.915 1 51.94 ? C22 DDR 1 A 1 HETATM 4 C C23 DDR . . . B 2 0.936 -1.118 19.057 1 51.07 ? C23 DDR 1 A 1 HETATM 5 C C24 DDR . . . B 2 0.196 -1.465 20.339 1 51.74 ? C24 DDR 1 A 1 HETATM 6 C C25 DDR . . . B 2 0.669 -0.634 21.524 1 51.4 ? C25 DDR 1 A 1 HETATM 7 C C26 DDR . . . B 2 1.796 -1.334 22.271 1 51.37 ? C26 DDR 1 A 1 HETATM 8 C C27 DDR . . . B 2 1.954 -0.77 23.678 1 51.86 ? C27 DDR 1 A 1 HETATM 9 C C28 DDR . . . B 2 3.023 -1.526 24.461 1 51.28 ? C28 DDR 1 A 1 HETATM 10 C C29 DDR . . . B 2 4.302 -0.708 24.571 1 51.28 ? C29 DDR 1 A 1 HETATM 11 C C30 DDR . . . B 2 4.629 -0.389 26.008 1 51.04 ? C30 DDR 1 A 1 HETATM 12 O O52 DDR . . . B 2 0.586 -1.849 15.339 1 52.79 ? O52 DDR 1 A 1 HETATM 13 C C52 DDR . . . B 2 0.315 -0.657 14.581 1 51.63 ? C52 DDR 1 A 1 HETATM 14 C C53 DDR . . . B 2 -0.325 -0.914 13.212 1 52.62 ? C53 DDR 1 A 1 HETATM 15 O O53 DDR . . . B 2 -0.557 -2.312 12.97 1 55.07 ? O53 DDR 1 A 1 HETATM 16 C C51 DDR . . . B 2 -0.692 0.158 15.355 1 49.58 ? C51 DDR 1 A 1 HETATM 17 O O51 DDR . . . B 2 -0.064 1.094 16.219 1 46.29 ? O51 DDR 1 A 1 HETATM 18 C C1 DDR . . . B 2 -0.891 1.673 17.259 1 45.64 ? C1 DDR 1 A 1 HETATM 19 O O1 DDR . . . B 2 -1.849 1.012 17.641 1 42.85 ? O1 DDR 1 A 1 HETATM 20 C C2 DDR . . . B 2 -0.595 3.048 17.828 1 45.7 ? C2 DDR 1 A 1 HETATM 21 C C3 DDR . . . B 2 0.648 3.118 18.707 1 46.34 ? C3 DDR 1 A 1 HETATM 22 C C4 DDR . . . B 2 0.447 4.003 19.934 1 46.31 ? C4 DDR 1 A 1 HETATM 23 C C5 DDR . . . B 2 0.783 3.2 21.187 1 46.96 ? C5 DDR 1 A 1 HETATM 24 C C6 DDR . . . B 2 0.604 3.981 22.478 1 46.41 ? C6 DDR 1 A 1 HETATM 25 C C7 DDR . . . B 2 1.621 3.506 23.505 1 47.69 ? C7 DDR 1 A 1 HETATM 26 C C8 DDR . . . B 2 0.969 2.757 24.659 1 47.73 ? C8 DDR 1 A 1 HETATM 27 C C9 DDR . . . B 2 1.462 3.32 25.985 1 46.35 ? C9 DDR 1 A 1 HETATM 28 C C10 DDR . . . B 2 1.378 2.286 27.089 1 47.25 ? C10 DDR 1 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #