data_2ZA1
#
_model_server_result.job_id            acO3Zyzh4KjTPFl_vhxi0Q 
_model_server_result.datetime_utc      '2024-11-08 14:50:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2za1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":600}' 
#
_entry.id    2ZA1 
#
_exptl.entry_id    2ZA1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              368.191 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "OROTIDINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2ZA1 
_cell.length_a            201.8 
_cell.length_b            201.8 
_cell.length_c            44.2 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZA1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C10 H13 N2 O11 P' 
_chem_comp.formula_weight    368.191 
_chem_comp.id                OMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "OROTIDINE-5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P OMP doub 237 n n 
P O2P OMP sing 238 n n 
P O3P OMP sing 239 n n 
P O5' OMP sing 240 n n 
O2P HOP2 OMP sing 241 n n 
O3P HOP3 OMP sing 242 n n 
O5' C5' OMP sing 243 n n 
C5' C4' OMP sing 244 n n 
C5' "H5'1" OMP sing 245 n n 
C5' "H5'2" OMP sing 246 n n 
C4' O4' OMP sing 247 n n 
C4' C3' OMP sing 248 n n 
C4' H4' OMP sing 249 n n 
O4' C1' OMP sing 250 n n 
C3' C2' OMP sing 251 n n 
C3' O3' OMP sing 252 n n 
C3' H3' OMP sing 253 n n 
O3' HO3' OMP sing 254 n n 
C2' C1' OMP sing 255 n n 
C2' O2' OMP sing 256 n n 
C2' H2' OMP sing 257 n n 
O2' HO2' OMP sing 258 n n 
C1' N1 OMP sing 259 n n 
C1' H1' OMP sing 260 n n 
N1 C2 OMP sing 261 n n 
N1 C6 OMP sing 262 n n 
C2 N3 OMP sing 263 n n 
C2 O2 OMP doub 264 n n 
N3 C4 OMP sing 265 n n 
N3 HN3 OMP sing 266 n n 
C4 C5 OMP sing 267 n n 
C4 O4 OMP doub 268 n n 
C5 C6 OMP doub 269 n n 
C5 H5 OMP sing 270 n n 
C6 C7 OMP sing 271 n n 
C7 O71 OMP doub 272 n n 
C7 O72 OMP sing 273 n n 
O72 HO7 OMP sing 274 n n 
#
_atom_sites.entry_id                     2ZA1 
_atom_sites.fract_transf_matrix[1][1]    0.004955 
_atom_sites.fract_transf_matrix[1][2]    0.002861 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005722 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022624 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 OMP A 1 500 500 OMP OMP . 
D 2 OMP B 1 600 600 OMP OMP . 
E 3 HOH A 1 501 3 HOH WAT . 
E 3 HOH A 2 502 4 HOH WAT . 
E 3 HOH A 3 503 5 HOH WAT . 
E 3 HOH A 4 504 7 HOH WAT . 
E 3 HOH A 5 505 8 HOH WAT . 
E 3 HOH A 6 506 9 HOH WAT . 
E 3 HOH A 7 507 10 HOH WAT . 
E 3 HOH A 8 508 13 HOH WAT . 
E 3 HOH A 9 509 15 HOH WAT . 
E 3 HOH A 10 510 16 HOH WAT . 
E 3 HOH A 11 511 19 HOH WAT . 
E 3 HOH A 12 512 20 HOH WAT . 
E 3 HOH A 13 513 21 HOH WAT . 
E 3 HOH A 14 514 28 HOH WAT . 
E 3 HOH A 15 515 31 HOH WAT . 
E 3 HOH A 16 516 33 HOH WAT . 
E 3 HOH A 17 517 34 HOH WAT . 
E 3 HOH A 18 518 36 HOH WAT . 
E 3 HOH A 19 519 43 HOH WAT . 
E 3 HOH A 20 520 46 HOH WAT . 
E 3 HOH A 21 521 49 HOH WAT . 
E 3 HOH A 22 522 51 HOH WAT . 
E 3 HOH A 23 523 52 HOH WAT . 
E 3 HOH A 24 524 58 HOH WAT . 
E 3 HOH A 25 525 62 HOH WAT . 
E 3 HOH A 26 526 63 HOH WAT . 
E 3 HOH A 27 527 65 HOH WAT . 
E 3 HOH A 28 528 66 HOH WAT . 
E 3 HOH A 29 529 67 HOH WAT . 
E 3 HOH A 30 530 68 HOH WAT . 
E 3 HOH A 31 531 70 HOH WAT . 
E 3 HOH A 32 532 71 HOH WAT . 
E 3 HOH A 33 533 72 HOH WAT . 
E 3 HOH A 34 534 73 HOH WAT . 
E 3 HOH A 35 535 74 HOH WAT . 
E 3 HOH A 36 536 75 HOH WAT . 
E 3 HOH A 37 537 77 HOH WAT . 
E 3 HOH A 38 538 84 HOH WAT . 
E 3 HOH A 39 539 87 HOH WAT . 
E 3 HOH A 40 540 90 HOH WAT . 
E 3 HOH A 41 541 92 HOH WAT . 
E 3 HOH A 42 542 93 HOH WAT . 
E 3 HOH A 43 543 94 HOH WAT . 
E 3 HOH A 44 544 96 HOH WAT . 
E 3 HOH A 45 545 97 HOH WAT . 
E 3 HOH A 46 546 98 HOH WAT . 
E 3 HOH A 47 547 100 HOH WAT . 
E 3 HOH A 48 548 101 HOH WAT . 
E 3 HOH A 49 549 102 HOH WAT . 
E 3 HOH A 50 550 103 HOH WAT . 
E 3 HOH A 51 551 104 HOH WAT . 
E 3 HOH A 52 552 105 HOH WAT . 
E 3 HOH A 53 553 107 HOH WAT . 
E 3 HOH A 54 554 109 HOH WAT . 
E 3 HOH A 55 555 113 HOH WAT . 
E 3 HOH A 56 556 114 HOH WAT . 
E 3 HOH A 57 557 118 HOH WAT . 
E 3 HOH A 58 558 119 HOH WAT . 
E 3 HOH A 59 559 120 HOH WAT . 
E 3 HOH A 60 560 121 HOH WAT . 
E 3 HOH A 61 561 122 HOH WAT . 
E 3 HOH A 62 562 123 HOH WAT . 
E 3 HOH A 63 563 127 HOH WAT . 
E 3 HOH A 64 564 129 HOH WAT . 
F 3 HOH B 1 601 1 HOH WAT . 
F 3 HOH B 2 602 2 HOH WAT . 
F 3 HOH B 3 603 6 HOH WAT . 
F 3 HOH B 4 604 11 HOH WAT . 
F 3 HOH B 5 605 12 HOH WAT . 
F 3 HOH B 6 606 14 HOH WAT . 
F 3 HOH B 7 607 18 HOH WAT . 
F 3 HOH B 8 608 22 HOH WAT . 
F 3 HOH B 9 609 23 HOH WAT . 
F 3 HOH B 10 610 25 HOH WAT . 
F 3 HOH B 11 611 26 HOH WAT . 
F 3 HOH B 12 612 27 HOH WAT . 
F 3 HOH B 13 613 29 HOH WAT . 
F 3 HOH B 14 614 30 HOH WAT . 
F 3 HOH B 15 615 32 HOH WAT . 
F 3 HOH B 16 616 38 HOH WAT . 
F 3 HOH B 17 617 39 HOH WAT . 
F 3 HOH B 18 618 40 HOH WAT . 
F 3 HOH B 19 619 41 HOH WAT . 
F 3 HOH B 20 620 42 HOH WAT . 
F 3 HOH B 21 621 44 HOH WAT . 
F 3 HOH B 22 622 45 HOH WAT . 
F 3 HOH B 23 623 47 HOH WAT . 
F 3 HOH B 24 624 48 HOH WAT . 
F 3 HOH B 25 625 50 HOH WAT . 
F 3 HOH B 26 626 53 HOH WAT . 
F 3 HOH B 27 627 54 HOH WAT . 
F 3 HOH B 28 628 55 HOH WAT . 
F 3 HOH B 29 629 57 HOH WAT . 
F 3 HOH B 30 630 59 HOH WAT . 
F 3 HOH B 31 631 60 HOH WAT . 
F 3 HOH B 32 632 61 HOH WAT . 
F 3 HOH B 33 633 69 HOH WAT . 
F 3 HOH B 34 634 78 HOH WAT . 
F 3 HOH B 35 635 79 HOH WAT . 
F 3 HOH B 36 636 80 HOH WAT . 
F 3 HOH B 37 637 82 HOH WAT . 
F 3 HOH B 38 638 86 HOH WAT . 
F 3 HOH B 39 639 89 HOH WAT . 
F 3 HOH B 40 640 91 HOH WAT . 
F 3 HOH B 41 641 99 HOH WAT . 
F 3 HOH B 42 642 110 HOH WAT . 
F 3 HOH B 43 643 111 HOH WAT . 
F 3 HOH B 44 644 112 HOH WAT . 
F 3 HOH B 45 645 116 HOH WAT . 
F 3 HOH B 46 646 117 HOH WAT . 
F 3 HOH B 47 647 124 HOH WAT . 
F 3 HOH B 48 648 125 HOH WAT . 
F 3 HOH B 49 649 126 HOH WAT . 
F 3 HOH B 50 650 128 HOH WAT . 
F 3 HOH B 51 651 131 HOH WAT . 
F 3 HOH B 52 652 132 HOH WAT . 
F 3 HOH B 53 653 133 HOH WAT . 
F 3 HOH B 54 654 134 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P OMP . . . D 2 38.763 17.921 1.93 1 61.56 ? P OMP 600 B 1 
HETATM 2 O O1P OMP . . . D 2 37.592 17.041 1.525 1 53.08 ? O1P OMP 600 B 1 
HETATM 3 O O2P OMP . . . D 2 40.15 17.153 1.579 1 61.59 ? O2P OMP 600 B 1 
HETATM 4 O O3P OMP . . . D 2 38.704 19.355 1.169 1 64.05 ? O3P OMP 600 B 1 
HETATM 5 O O5' OMP . . . D 2 38.725 18.281 3.496 1 71.25 ? O5' OMP 600 B 1 
HETATM 6 C C5' OMP . . . D 2 37.478 18.924 3.757 1 73.81 ? C5' OMP 600 B 1 
HETATM 7 C C4' OMP . . . D 2 37.494 19.448 5.155 1 64.69 ? C4' OMP 600 B 1 
HETATM 8 O O4' OMP . . . D 2 38.502 20.495 5.26 1 74.72 ? O4' OMP 600 B 1 
HETATM 9 C C3' OMP . . . D 2 36.166 20.136 5.515 1 68.76 ? C3' OMP 600 B 1 
HETATM 10 O O3' OMP . . . D 2 35.325 19.178 6.122 1 51.38 ? O3' OMP 600 B 1 
HETATM 11 C C2' OMP . . . D 2 36.559 21.317 6.417 1 71.76 ? C2' OMP 600 B 1 
HETATM 12 O O2' OMP . . . D 2 35.978 21.199 7.707 1 86.39 ? O2' OMP 600 B 1 
HETATM 13 C C1' OMP . . . D 2 38.103 21.181 6.45 1 69.3 ? C1' OMP 600 B 1 
HETATM 14 N N1 OMP . . . D 2 38.788 22.516 6.691 1 78.29 ? N1 OMP 600 B 1 
HETATM 15 C C2 OMP . . . D 2 39.085 23.308 5.61 1 80.11 ? C2 OMP 600 B 1 
HETATM 16 O O2 OMP . . . D 2 38.811 22.92 4.481 1 74.28 ? O2 OMP 600 B 1 
HETATM 17 N N3 OMP . . . D 2 39.677 24.511 5.757 1 78.99 ? N3 OMP 600 B 1 
HETATM 18 C C4 OMP . . . D 2 40.01 25.017 6.968 1 80.24 ? C4 OMP 600 B 1 
HETATM 19 O O4 OMP . . . D 2 40.529 26.127 7.072 1 82.02 ? O4 OMP 600 B 1 
HETATM 20 C C5 OMP . . . D 2 39.73 24.206 8.189 1 89.52 ? C5 OMP 600 B 1 
HETATM 21 C C6 OMP . . . D 2 39.118 22.965 8.028 1 95.04 ? C6 OMP 600 B 1 
HETATM 22 C C7 OMP . . . D 2 38.859 22.164 9.336 1 105.92 ? C7 OMP 600 B 1 
HETATM 23 O O71 OMP . . . D 2 38.335 21.06 9.329 1 113.01 ? O71 OMP 600 B 1 
HETATM 24 O O72 OMP . . . D 2 39.212 22.674 10.561 1 109.69 ? O72 OMP 600 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           24 
#