data_2ZAO # _model_server_result.job_id 2jKmriPgcq93qZA-9Quc_g _model_server_result.datetime_utc '2024-11-20 02:30:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zao # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":445}' # _entry.id 2ZAO # _exptl.entry_id 2ZAO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ZAO _cell.length_a 75.673 _cell.length_b 75.673 _cell.length_c 132.685 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZAO _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 2ZAO _atom_sites.fract_transf_matrix[1][1] 0.013215 _atom_sites.fract_transf_matrix[1][2] 0.00763 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015259 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007537 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id ADP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 445 _pdbx_nonpoly_scheme.auth_seq_num 445 _pdbx_nonpoly_scheme.pdb_mon_id ADP _pdbx_nonpoly_scheme.auth_mon_id ADP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 21.297 17.707 -3.827 1 63.76 ? PB ADP 445 A 1 HETATM 2 O O1B ADP . . . B 2 20.451 17.52 -2.614 1 65.17 ? O1B ADP 445 A 1 HETATM 3 O O2B ADP . . . B 2 22.174 16.51 -4.403 1 62.87 ? O2B ADP 445 A 1 HETATM 4 O O3B ADP . . . B 2 21.669 19.224 -4.283 1 63.03 ? O3B ADP 445 A 1 HETATM 5 P PA ADP . . . B 2 22.283 19.166 -1.746 1 58.32 ? PA ADP 445 A 1 HETATM 6 O O1A ADP . . . B 2 21.88 18.86 -0.355 1 58.53 ? O1A ADP 445 A 1 HETATM 7 O O2A ADP . . . B 2 22.88 20.572 -2.205 1 59.15 ? O2A ADP 445 A 1 HETATM 8 O O3A ADP . . . B 2 22.567 17.908 -2.776 1 60.4 ? O3A ADP 445 A 1 HETATM 9 O O5' ADP . . . B 2 23.781 18.779 -1.187 1 55.62 ? O5' ADP 445 A 1 HETATM 10 C C5' ADP . . . B 2 24.155 19.674 -0.116 1 51.32 ? C5' ADP 445 A 1 HETATM 11 C C4' ADP . . . B 2 25.536 19.341 0.438 1 49.73 ? C4' ADP 445 A 1 HETATM 12 O O4' ADP . . . B 2 26.582 19.38 -0.564 1 47.99 ? O4' ADP 445 A 1 HETATM 13 C C3' ADP . . . B 2 25.885 20.341 1.546 1 49.04 ? C3' ADP 445 A 1 HETATM 14 O O3' ADP . . . B 2 26.225 19.679 2.754 1 50.73 ? O3' ADP 445 A 1 HETATM 15 C C2' ADP . . . B 2 27.044 21.154 1.017 1 47.25 ? C2' ADP 445 A 1 HETATM 16 O O2' ADP . . . B 2 28.142 21.02 1.902 1 47.99 ? O2' ADP 445 A 1 HETATM 17 C C1' ADP . . . B 2 27.363 20.598 -0.389 1 46.59 ? C1' ADP 445 A 1 HETATM 18 N N9 ADP . . . B 2 27.015 21.572 -1.435 1 46.45 ? N9 ADP 445 A 1 HETATM 19 C C8 ADP . . . B 2 26.362 21.297 -2.616 1 48.31 ? C8 ADP 445 A 1 HETATM 20 N N7 ADP . . . B 2 26.209 22.373 -3.326 1 47.48 ? N7 ADP 445 A 1 HETATM 21 C C5 ADP . . . B 2 26.757 23.401 -2.662 1 47.42 ? C5 ADP 445 A 1 HETATM 22 C C6 ADP . . . B 2 26.898 24.776 -2.922 1 47.94 ? C6 ADP 445 A 1 HETATM 23 N N6 ADP . . . B 2 26.411 25.289 -4.086 1 47.74 ? N6 ADP 445 A 1 HETATM 24 N N1 ADP . . . B 2 27.525 25.557 -2.016 1 48.85 ? N1 ADP 445 A 1 HETATM 25 C C2 ADP . . . B 2 28.009 25.053 -0.869 1 49.05 ? C2 ADP 445 A 1 HETATM 26 N N3 ADP . . . B 2 27.889 23.756 -0.584 1 48.11 ? N3 ADP 445 A 1 HETATM 27 C C4 ADP . . . B 2 27.285 22.907 -1.44 1 46.92 ? C4 ADP 445 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #