data_2ZBB # _model_server_result.job_id Pt26OHsxvcYvpmSyFLlkUg _model_server_result.datetime_utc '2025-03-01 04:24:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zbb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1}' # _entry.id 2ZBB # _exptl.entry_id 2ZBB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 104.061 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ZBB _cell.length_a 70.36 _cell.length_b 70.36 _cell.length_c 226.92 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZBB _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C3 H4 O4' _chem_comp.formula_weight 104.061 _chem_comp.id MLA _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A MLA sing 224 n n C1 O1B MLA doub 225 n n C1 C2 MLA sing 226 n n O1A H1A MLA sing 227 n n C2 C3 MLA sing 228 n n C2 HC21 MLA sing 229 n n C2 HC22 MLA sing 230 n n C3 O3A MLA doub 231 n n C3 O3B MLA sing 232 n n O3B H3B MLA sing 233 n n # _atom_sites.entry_id 2ZBB _atom_sites.fract_transf_matrix[1][1] 0.014213 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014213 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004407 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MLA A 1 1 1 MLA MLA . F 2 MLA B 1 2 2 MLA MLA . G 2 MLA C 1 3 3 MLA MLA . H 2 MLA D 1 4 4 MLA MLA . I 3 HOH A 1 313 13 HOH HOH . I 3 HOH A 2 314 14 HOH HOH . I 3 HOH A 3 315 15 HOH HOH . I 3 HOH A 4 316 18 HOH HOH . I 3 HOH A 5 317 19 HOH HOH . J 3 HOH B 1 313 5 HOH HOH . J 3 HOH B 2 314 6 HOH HOH . J 3 HOH B 3 315 21 HOH HOH . J 3 HOH B 4 316 22 HOH HOH . J 3 HOH B 5 317 23 HOH HOH . J 3 HOH B 6 318 26 HOH HOH . K 3 HOH C 1 313 10 HOH HOH . L 3 HOH D 1 313 1 HOH HOH . L 3 HOH D 2 314 2 HOH HOH . L 3 HOH D 3 315 3 HOH HOH . L 3 HOH D 4 316 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLA . . . E 2 -21.904 16.26 7.285 1 48.21 ? C1 MLA 1 A 1 HETATM 2 O O1A MLA . . . E 2 -22.354 15.254 7.873 1 49.04 ? O1A MLA 1 A 1 HETATM 3 O O1B MLA . . . E 2 -20.718 16.613 7.289 1 49.47 ? O1B MLA 1 A 1 HETATM 4 C C2 MLA . . . E 2 -22.865 17.134 6.477 1 48.78 ? C2 MLA 1 A 1 HETATM 5 C C3 MLA . . . E 2 -23.941 16.271 5.861 1 49.7 ? C3 MLA 1 A 1 HETATM 6 O O3A MLA . . . E 2 -25.11 16.549 6.213 1 54.86 ? O3A MLA 1 A 1 HETATM 7 O O3B MLA . . . E 2 -23.597 15.359 5.076 1 46.81 ? O3B MLA 1 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #