data_2ZBD # _model_server_result.job_id 1rItnP3nIY_4CvAZfaEcgQ _model_server_result.datetime_utc '2024-11-05 00:39:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zbd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":995}' # _entry.id 2ZBD # _exptl.entry_id 2ZBD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.3 _cell.angle_gamma 90 _cell.entry_id 2ZBD _cell.length_a 162.9 _cell.length_b 75.1 _cell.length_c 152.1 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZBD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 877 A CYS 876 1_555 A SG CYS 889 A CYS 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? metalc ? metalc1 A O VAL 305 A VAL 304 1_555 C CA CA . A CA 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc2 A O ALA 306 A ALA 305 1_555 C CA CA . A CA 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc3 A O ILE 308 A ILE 307 1_555 C CA CA . A CA 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc4 A OE1 GLU 310 A GLU 309 1_555 C CA CA . A CA 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc5 A OE2 GLU 310 A GLU 309 1_555 C CA CA . A CA 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc6 A OD2 ASP 352 A ASP 351 1_555 F MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc7 A O THR 354 A THR 353 1_555 F MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc8 A OD1 ASP 704 A ASP 703 1_555 F MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc9 A OD1 ASN 769 A ASN 768 1_555 B CA CA . A CA 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc10 A OE2 GLU 772 A GLU 771 1_555 B CA CA . A CA 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc11 A OD1 ASN 797 A ASN 796 1_555 C CA CA . A CA 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc12 A OG1 THR 800 A THR 799 1_555 B CA CA . A CA 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc13 A OD1 ASP 801 A ASP 800 1_555 B CA CA . A CA 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc14 A OD2 ASP 801 A ASP 800 1_555 C CA CA . A CA 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc15 A OE2 GLU 909 A GLU 908 1_555 B CA CA . A CA 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc16 B CA CA . A CA 995 1_555 J O HOH . A HOH 1014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc17 B CA CA . A CA 995 1_555 J O HOH . A HOH 1015 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc18 D MG MG . A MG 997 1_555 G O1B ADP . A ADP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc19 F MG MG . A MG 1001 1_555 J O HOH . A HOH 1038 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc20 F MG MG . A MG 1001 1_555 J O HOH . A HOH 1041 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2ZBD _atom_sites.fract_transf_matrix[1][1] 0.006139 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00215 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013316 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 995 995 CA CA . C 2 CA A 1 996 996 CA CA . D 3 MG A 1 997 997 MG MG . E 4 ALF A 1 998 998 ALF ALF . F 3 MG A 1 1001 1001 MG MG . G 5 ADP A 1 1002 1002 ADP ADP . H 6 PC1 A 1 1011 1011 PC1 PC1 . I 6 PC1 A 1 1012 1012 PC1 PC1 . J 7 HOH A 1 1013 1013 HOH HOH . J 7 HOH A 2 1014 1014 HOH HOH . J 7 HOH A 3 1015 1015 HOH HOH . J 7 HOH A 4 1016 1016 HOH HOH . J 7 HOH A 5 1017 1017 HOH HOH . J 7 HOH A 6 1018 1018 HOH HOH . J 7 HOH A 7 1019 1019 HOH HOH . J 7 HOH A 8 1020 1020 HOH HOH . J 7 HOH A 9 1021 1021 HOH HOH . J 7 HOH A 10 1022 1022 HOH HOH . J 7 HOH A 11 1023 1023 HOH HOH . J 7 HOH A 12 1024 1024 HOH HOH . J 7 HOH A 13 1025 1025 HOH HOH . J 7 HOH A 14 1026 1026 HOH HOH . J 7 HOH A 15 1027 1027 HOH HOH . J 7 HOH A 16 1028 1028 HOH HOH . J 7 HOH A 17 1029 1029 HOH HOH . J 7 HOH A 18 1030 1030 HOH HOH . J 7 HOH A 19 1031 1031 HOH HOH . J 7 HOH A 20 1032 1032 HOH HOH . J 7 HOH A 21 1033 1033 HOH HOH . J 7 HOH A 22 1034 1034 HOH HOH . J 7 HOH A 23 1035 1035 HOH HOH . J 7 HOH A 24 1036 1036 HOH HOH . J 7 HOH A 25 1037 1037 HOH HOH . J 7 HOH A 26 1038 1038 HOH HOH . J 7 HOH A 27 1039 1039 HOH HOH . J 7 HOH A 28 1040 1040 HOH HOH . J 7 HOH A 29 1041 1041 HOH HOH . J 7 HOH A 30 1042 1042 HOH HOH . J 7 HOH A 31 1043 1043 HOH HOH . J 7 HOH A 32 1044 1044 HOH HOH . J 7 HOH A 33 1045 1045 HOH HOH . J 7 HOH A 34 1046 1046 HOH HOH . J 7 HOH A 35 1047 1047 HOH HOH . J 7 HOH A 36 1048 1048 HOH HOH . J 7 HOH A 37 1049 1049 HOH HOH . J 7 HOH A 38 1050 1050 HOH HOH . J 7 HOH A 39 1051 1051 HOH HOH . J 7 HOH A 40 1052 1052 HOH HOH . J 7 HOH A 41 1053 1053 HOH HOH . J 7 HOH A 42 1054 1054 HOH HOH . J 7 HOH A 43 1055 1055 HOH HOH . J 7 HOH A 44 1056 1056 HOH HOH . J 7 HOH A 45 1057 1057 HOH HOH . J 7 HOH A 46 1058 1058 HOH HOH . J 7 HOH A 47 1059 1059 HOH HOH . J 7 HOH A 48 1060 1060 HOH HOH . J 7 HOH A 49 1061 1061 HOH HOH . J 7 HOH A 50 1062 1062 HOH HOH . J 7 HOH A 51 1063 1063 HOH HOH . J 7 HOH A 52 1064 1064 HOH HOH . J 7 HOH A 53 1065 1065 HOH HOH . J 7 HOH A 54 1066 1066 HOH HOH . J 7 HOH A 55 1067 1067 HOH HOH . J 7 HOH A 56 1068 1068 HOH HOH . J 7 HOH A 57 1069 1069 HOH HOH . J 7 HOH A 58 1070 1070 HOH HOH . J 7 HOH A 59 1071 1071 HOH HOH . J 7 HOH A 60 1072 1072 HOH HOH . J 7 HOH A 61 1073 1073 HOH HOH . J 7 HOH A 62 1074 1074 HOH HOH . J 7 HOH A 63 1075 1075 HOH HOH . J 7 HOH A 64 1076 1076 HOH HOH . J 7 HOH A 65 1077 1077 HOH HOH . J 7 HOH A 66 1078 1078 HOH HOH . J 7 HOH A 67 1079 1079 HOH HOH . J 7 HOH A 68 1080 1080 HOH HOH . J 7 HOH A 69 1081 1081 HOH HOH . J 7 HOH A 70 1082 1082 HOH HOH . J 7 HOH A 71 1083 1083 HOH HOH . J 7 HOH A 72 1084 1084 HOH HOH . J 7 HOH A 73 1085 1085 HOH HOH . J 7 HOH A 74 1086 1086 HOH HOH . J 7 HOH A 75 1087 1087 HOH HOH . J 7 HOH A 76 1088 1088 HOH HOH . J 7 HOH A 77 1089 1089 HOH HOH . J 7 HOH A 78 1090 1090 HOH HOH . J 7 HOH A 79 1091 1091 HOH HOH . J 7 HOH A 80 1092 1092 HOH HOH . J 7 HOH A 81 1093 1093 HOH HOH . J 7 HOH A 82 1094 1094 HOH HOH . J 7 HOH A 83 1095 1095 HOH HOH . J 7 HOH A 84 1096 1096 HOH HOH . J 7 HOH A 85 1097 1097 HOH HOH . J 7 HOH A 86 1098 1098 HOH HOH . J 7 HOH A 87 1099 1099 HOH HOH . J 7 HOH A 88 1100 1100 HOH HOH . J 7 HOH A 89 1101 1101 HOH HOH . J 7 HOH A 90 1102 1102 HOH HOH . J 7 HOH A 91 1103 1103 HOH HOH . J 7 HOH A 92 1104 1104 HOH HOH . J 7 HOH A 93 1105 1105 HOH HOH . J 7 HOH A 94 1106 1106 HOH HOH . J 7 HOH A 95 1107 1107 HOH HOH . J 7 HOH A 96 1108 1108 HOH HOH . J 7 HOH A 97 1109 1109 HOH HOH . J 7 HOH A 98 1110 1110 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 62.131 _atom_site.Cartn_y 31.81 _atom_site.Cartn_z 2.534 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 110.92 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 995 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #