data_2ZBJ # _model_server_result.job_id IBOOgU-zAFIIKH0ZZhISfg _model_server_result.datetime_utc '2025-04-27 22:27:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zbj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":238}' # _entry.id 2ZBJ # _exptl.entry_id 2ZBJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ZBJ _cell.length_a 61.511 _cell.length_b 88.22 _cell.length_c 87.764 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZBJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 61.511 88.22 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 61.511 0 0 4 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 88.22 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 8 A GLU 8 1_555 C MN MN . A MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc2 A OD2 ASP 10 A ASP 10 1_555 C MN MN . A MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc3 A OD1 ASP 10 A ASP 10 1_555 D CA CA . A CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc4 A OD2 ASP 10 A ASP 10 1_555 D CA CA . A CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc5 A O TYR 12 A TYR 12 1_555 D CA CA . A CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc6 A OD1 ASN 14 A ASN 14 1_555 D CA CA . A CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc7 A OD1 ASP 19 A ASP 19 1_555 C MN MN . A MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc8 A OD2 ASP 19 A ASP 19 1_555 D CA CA . A CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc9 C MN MN . A MN 238 1_555 E O HOH . A HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc10 C MN MN . A MN 238 1_555 E O HOH . A HOH 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc11 D CA CA . A CA 239 1_555 E O HOH . A HOH 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc12 D CA CA . A CA 239 1_555 E O HOH . A HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2ZBJ _atom_sites.fract_transf_matrix[1][1] 0.016257 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011335 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011394 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 1285 285 PO4 PO4 . C 3 MN A 1 238 238 MN MN . D 4 CA A 1 239 239 CA CA . E 5 HOH A 1 240 240 HOH HOH . E 5 HOH A 2 241 241 HOH HOH . E 5 HOH A 3 242 242 HOH HOH . E 5 HOH A 4 245 245 HOH HOH . E 5 HOH A 5 246 246 HOH HOH . E 5 HOH A 6 248 248 HOH HOH . E 5 HOH A 7 249 249 HOH HOH . E 5 HOH A 8 250 250 HOH HOH . E 5 HOH A 9 251 251 HOH HOH . E 5 HOH A 10 252 252 HOH HOH . E 5 HOH A 11 253 253 HOH HOH . E 5 HOH A 12 254 254 HOH HOH . E 5 HOH A 13 255 255 HOH HOH . E 5 HOH A 14 256 256 HOH HOH . E 5 HOH A 15 257 257 HOH HOH . E 5 HOH A 16 259 259 HOH HOH . E 5 HOH A 17 260 260 HOH HOH . E 5 HOH A 18 262 262 HOH HOH . E 5 HOH A 19 263 263 HOH HOH . E 5 HOH A 20 264 264 HOH HOH . E 5 HOH A 21 265 265 HOH HOH . E 5 HOH A 22 266 266 HOH HOH . E 5 HOH A 23 270 270 HOH HOH . E 5 HOH A 24 271 271 HOH HOH . E 5 HOH A 25 272 272 HOH HOH . E 5 HOH A 26 273 273 HOH HOH . E 5 HOH A 27 274 274 HOH HOH . E 5 HOH A 28 275 275 HOH HOH . E 5 HOH A 29 276 276 HOH HOH . E 5 HOH A 30 277 277 HOH HOH . E 5 HOH A 31 278 278 HOH HOH . E 5 HOH A 32 279 279 HOH HOH . E 5 HOH A 33 281 281 HOH HOH . E 5 HOH A 34 282 282 HOH HOH . E 5 HOH A 35 283 283 HOH HOH . E 5 HOH A 36 284 284 HOH HOH . E 5 HOH A 37 285 285 HOH HOH . E 5 HOH A 38 288 288 HOH HOH . E 5 HOH A 39 289 289 HOH HOH . E 5 HOH A 40 290 290 HOH HOH . E 5 HOH A 41 291 291 HOH HOH . E 5 HOH A 42 292 292 HOH HOH . E 5 HOH A 43 293 293 HOH HOH . E 5 HOH A 44 294 294 HOH HOH . E 5 HOH A 45 295 295 HOH HOH . E 5 HOH A 46 296 296 HOH HOH . E 5 HOH A 47 297 297 HOH HOH . E 5 HOH A 48 298 298 HOH HOH . E 5 HOH A 49 299 299 HOH HOH . E 5 HOH A 50 300 300 HOH HOH . E 5 HOH A 51 301 301 HOH HOH . E 5 HOH A 52 305 305 HOH HOH . E 5 HOH A 53 306 306 HOH HOH . E 5 HOH A 54 307 307 HOH HOH . E 5 HOH A 55 308 308 HOH HOH . E 5 HOH A 56 309 309 HOH HOH . E 5 HOH A 57 311 311 HOH HOH . E 5 HOH A 58 312 312 HOH HOH . E 5 HOH A 59 313 313 HOH HOH . E 5 HOH A 60 314 314 HOH HOH . E 5 HOH A 61 315 315 HOH HOH . E 5 HOH A 62 317 317 HOH HOH . E 5 HOH A 63 318 318 HOH HOH . E 5 HOH A 64 319 319 HOH HOH . E 5 HOH A 65 320 320 HOH HOH . E 5 HOH A 66 321 321 HOH HOH . E 5 HOH A 67 323 323 HOH HOH . E 5 HOH A 68 324 324 HOH HOH . E 5 HOH A 69 326 326 HOH HOH . E 5 HOH A 70 327 327 HOH HOH . E 5 HOH A 71 328 328 HOH HOH . E 5 HOH A 72 329 329 HOH HOH . E 5 HOH A 73 332 332 HOH HOH . E 5 HOH A 74 333 333 HOH HOH . E 5 HOH A 75 334 334 HOH HOH . E 5 HOH A 76 335 335 HOH HOH . E 5 HOH A 77 336 336 HOH HOH . E 5 HOH A 78 337 337 HOH HOH . E 5 HOH A 79 338 338 HOH HOH . E 5 HOH A 80 340 340 HOH HOH . E 5 HOH A 81 343 343 HOH HOH . E 5 HOH A 82 348 348 HOH HOH . E 5 HOH A 83 349 349 HOH HOH . E 5 HOH A 84 350 350 HOH HOH . E 5 HOH A 85 352 352 HOH HOH . E 5 HOH A 86 353 353 HOH HOH . E 5 HOH A 87 354 354 HOH HOH . E 5 HOH A 88 355 355 HOH HOH . E 5 HOH A 89 359 359 HOH HOH . E 5 HOH A 90 360 360 HOH HOH . E 5 HOH A 91 361 361 HOH HOH . E 5 HOH A 92 362 362 HOH HOH . E 5 HOH A 93 363 363 HOH HOH . E 5 HOH A 94 364 364 HOH HOH . E 5 HOH A 95 365 365 HOH HOH . E 5 HOH A 96 366 366 HOH HOH . E 5 HOH A 97 367 367 HOH HOH . E 5 HOH A 98 368 368 HOH HOH . E 5 HOH A 99 369 369 HOH HOH . E 5 HOH A 100 370 370 HOH HOH . E 5 HOH A 101 371 371 HOH HOH . E 5 HOH A 102 372 372 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 16.153 _atom_site.Cartn_y 19.016 _atom_site.Cartn_z 16.353 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.49 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 238 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #