data_2ZBQ # _model_server_result.job_id eL3NYNioTceyr3Nun6IpJA _model_server_result.datetime_utc '2025-01-02 19:54:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zbq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 2ZBQ # _exptl.entry_id 2ZBQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 130.95 _cell.angle_gamma 90 _cell.entry_id 2ZBQ _cell.length_a 82.912 _cell.length_b 75.685 _cell.length_c 61.931 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZBQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 42.322412 0 46.775358 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 264 n n N HN1 SAH sing 265 n n N HN2 SAH sing 266 n n CA CB SAH sing 267 n n CA C SAH sing 268 n n CA HA SAH sing 269 n n CB CG SAH sing 270 n n CB HB1 SAH sing 271 n n CB HB2 SAH sing 272 n n CG SD SAH sing 273 n n CG HG1 SAH sing 274 n n CG HG2 SAH sing 275 n n SD C5' SAH sing 276 n n C O SAH doub 277 n n C OXT SAH sing 278 n n OXT HXT SAH sing 279 n n C5' C4' SAH sing 280 n n C5' "H5'1" SAH sing 281 n n C5' "H5'2" SAH sing 282 n n C4' O4' SAH sing 283 n n C4' C3' SAH sing 284 n n C4' H4' SAH sing 285 n n O4' C1' SAH sing 286 n n C3' O3' SAH sing 287 n n C3' C2' SAH sing 288 n n C3' H3' SAH sing 289 n n O3' HO3' SAH sing 290 n n C2' O2' SAH sing 291 n n C2' C1' SAH sing 292 n n C2' H2' SAH sing 293 n n O2' HO2' SAH sing 294 n n C1' N9 SAH sing 295 n n C1' H1' SAH sing 296 n n N9 C8 SAH sing 297 n y N9 C4 SAH sing 298 n y C8 N7 SAH doub 299 n y C8 H8 SAH sing 300 n n N7 C5 SAH sing 301 n y C5 C6 SAH sing 302 n y C5 C4 SAH doub 303 n y C6 N6 SAH sing 304 n n C6 N1 SAH doub 305 n y N6 HN61 SAH sing 306 n n N6 HN62 SAH sing 307 n n N1 C2 SAH sing 308 n y C2 N3 SAH doub 309 n y C2 H2 SAH sing 310 n n N3 C4 SAH sing 311 n y # _atom_sites.entry_id 2ZBQ _atom_sites.fract_transf_matrix[1][1] 0.012061 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.010466 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013213 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021379 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 300 300 SAH SAH . C 3 HOH A 1 301 301 HOH HOH . C 3 HOH A 2 302 302 HOH HOH . C 3 HOH A 3 303 303 HOH HOH . C 3 HOH A 4 304 304 HOH HOH . C 3 HOH A 5 305 305 HOH HOH . C 3 HOH A 6 306 306 HOH HOH . C 3 HOH A 7 307 307 HOH HOH . C 3 HOH A 8 308 308 HOH HOH . C 3 HOH A 9 309 309 HOH HOH . C 3 HOH A 10 310 310 HOH HOH . C 3 HOH A 11 311 311 HOH HOH . C 3 HOH A 12 312 312 HOH HOH . C 3 HOH A 13 313 313 HOH HOH . C 3 HOH A 14 314 314 HOH HOH . C 3 HOH A 15 315 315 HOH HOH . C 3 HOH A 16 316 316 HOH HOH . C 3 HOH A 17 317 317 HOH HOH . C 3 HOH A 18 318 318 HOH HOH . C 3 HOH A 19 319 319 HOH HOH . C 3 HOH A 20 320 320 HOH HOH . C 3 HOH A 21 321 321 HOH HOH . C 3 HOH A 22 322 322 HOH HOH . C 3 HOH A 23 323 323 HOH HOH . C 3 HOH A 24 324 324 HOH HOH . C 3 HOH A 25 325 325 HOH HOH . C 3 HOH A 26 326 326 HOH HOH . C 3 HOH A 27 327 327 HOH HOH . C 3 HOH A 28 328 328 HOH HOH . C 3 HOH A 29 329 329 HOH HOH . C 3 HOH A 30 330 330 HOH HOH . C 3 HOH A 31 331 331 HOH HOH . C 3 HOH A 32 332 332 HOH HOH . C 3 HOH A 33 333 333 HOH HOH . C 3 HOH A 34 334 334 HOH HOH . C 3 HOH A 35 335 335 HOH HOH . C 3 HOH A 36 336 336 HOH HOH . C 3 HOH A 37 337 337 HOH HOH . C 3 HOH A 38 338 338 HOH HOH . C 3 HOH A 39 339 339 HOH HOH . C 3 HOH A 40 340 340 HOH HOH . C 3 HOH A 41 341 341 HOH HOH . C 3 HOH A 42 342 342 HOH HOH . C 3 HOH A 43 343 343 HOH HOH . C 3 HOH A 44 344 344 HOH HOH . C 3 HOH A 45 345 345 HOH HOH . C 3 HOH A 46 346 346 HOH HOH . C 3 HOH A 47 347 347 HOH HOH . C 3 HOH A 48 348 348 HOH HOH . C 3 HOH A 49 349 349 HOH HOH . C 3 HOH A 50 350 350 HOH HOH . C 3 HOH A 51 351 351 HOH HOH . C 3 HOH A 52 352 352 HOH HOH . C 3 HOH A 53 353 353 HOH HOH . C 3 HOH A 54 354 354 HOH HOH . C 3 HOH A 55 355 355 HOH HOH . C 3 HOH A 56 356 356 HOH HOH . C 3 HOH A 57 357 357 HOH HOH . C 3 HOH A 58 358 358 HOH HOH . C 3 HOH A 59 359 359 HOH HOH . C 3 HOH A 60 360 360 HOH HOH . C 3 HOH A 61 361 361 HOH HOH . C 3 HOH A 62 362 362 HOH HOH . C 3 HOH A 63 363 363 HOH HOH . C 3 HOH A 64 364 364 HOH HOH . C 3 HOH A 65 365 365 HOH HOH . C 3 HOH A 66 366 366 HOH HOH . C 3 HOH A 67 367 367 HOH HOH . C 3 HOH A 68 368 368 HOH HOH . C 3 HOH A 69 369 369 HOH HOH . C 3 HOH A 70 370 370 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 30.032 45.851 15.085 1 30.01 ? N SAH 300 A 1 HETATM 2 C CA SAH . . . B 2 29.314 44.501 15.214 1 37.17 ? CA SAH 300 A 1 HETATM 3 C CB SAH . . . B 2 27.909 44.489 15.706 1 43.72 ? CB SAH 300 A 1 HETATM 4 C CG SAH . . . B 2 27.438 45.026 17.011 1 49.45 ? CG SAH 300 A 1 HETATM 5 S SD SAH . . . B 2 25.589 45.042 16.774 1 48.38 ? SD SAH 300 A 1 HETATM 6 C C SAH . . . B 2 29.227 43.838 13.818 1 34.03 ? C SAH 300 A 1 HETATM 7 O O SAH . . . B 2 29.663 44.41 12.838 1 44.93 ? O SAH 300 A 1 HETATM 8 O OXT SAH . . . B 2 28.661 42.702 13.796 1 39.44 ? OXT SAH 300 A 1 HETATM 9 C C5' SAH . . . B 2 25.133 46.71 16.987 1 37.22 ? C5' SAH 300 A 1 HETATM 10 C C4' SAH . . . B 2 25.879 47.427 18.228 1 39.91 ? C4' SAH 300 A 1 HETATM 11 O O4' SAH . . . B 2 25.28 48.683 18.14 1 41.19 ? O4' SAH 300 A 1 HETATM 12 C C3' SAH . . . B 2 25.532 46.949 19.618 1 39.22 ? C3' SAH 300 A 1 HETATM 13 O O3' SAH . . . B 2 26.696 46.501 20.295 1 31.87 ? O3' SAH 300 A 1 HETATM 14 C C2' SAH . . . B 2 24.805 48.22 20.28 1 43.23 ? C2' SAH 300 A 1 HETATM 15 O O2' SAH . . . B 2 25.077 48.33 21.675 1 43.31 ? O2' SAH 300 A 1 HETATM 16 C C1' SAH . . . B 2 25.341 49.381 19.426 1 46.31 ? C1' SAH 300 A 1 HETATM 17 N N9 SAH . . . B 2 24.596 50.481 19.201 1 50.77 ? N9 SAH 300 A 1 HETATM 18 C C8 SAH . . . B 2 23.235 50.684 18.956 1 47.77 ? C8 SAH 300 A 1 HETATM 19 N N7 SAH . . . B 2 22.887 51.915 18.751 1 52.03 ? N7 SAH 300 A 1 HETATM 20 C C5 SAH . . . B 2 24.108 52.646 18.856 1 46.48 ? C5 SAH 300 A 1 HETATM 21 C C6 SAH . . . B 2 24.394 54.056 18.712 1 47.4 ? C6 SAH 300 A 1 HETATM 22 N N6 SAH . . . B 2 23.468 54.99 18.429 1 39.97 ? N6 SAH 300 A 1 HETATM 23 N N1 SAH . . . B 2 25.722 54.392 18.889 1 42.85 ? N1 SAH 300 A 1 HETATM 24 C C2 SAH . . . B 2 26.702 53.479 19.172 1 44.17 ? C2 SAH 300 A 1 HETATM 25 N N3 SAH . . . B 2 26.471 52.127 19.309 1 45.49 ? N3 SAH 300 A 1 HETATM 26 C C4 SAH . . . B 2 25.16 51.785 19.139 1 48.59 ? C4 SAH 300 A 1 # _model_server_stats.io_time_ms 84 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 814 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #