data_2ZBR # _model_server_result.job_id LR0RbW9dO5NXQFi6ityp0w _model_server_result.datetime_utc '2025-03-05 02:16:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zbr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 2ZBR # _exptl.entry_id 2ZBR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 381.387 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SINEFUNGIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 130.67 _cell.angle_gamma 90 _cell.entry_id 2ZBR _cell.length_a 82.279 _cell.length_b 75.48 _cell.length_c 62.042 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZBR _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 41.846144 0 47.057348 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H23 N7 O5' _chem_comp.formula_weight 381.387 _chem_comp.id SFG _chem_comp.mon_nstd_flag . _chem_comp.name SINEFUNGIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ADENOSYL-ORNITHINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SFG sing 277 n n N HN1 SFG sing 278 n n N HN2 SFG sing 279 n n CA C SFG sing 280 n n CA CB SFG sing 281 n n CA HA SFG sing 282 n n C O SFG doub 283 n n C OXT SFG sing 284 n n OXT HXT SFG sing 285 n n CB CG SFG sing 286 n n CB HB1 SFG sing 287 n n CB HB2 SFG sing 288 n n CG CD SFG sing 289 n n CG HG1 SFG sing 290 n n CG HG2 SFG sing 291 n n CD NE SFG sing 292 n n CD C5' SFG sing 293 n n CD HD SFG sing 294 n n NE HNE1 SFG sing 295 n n NE HNE2 SFG sing 296 n n C5' C4' SFG sing 297 n n C5' "H5'1" SFG sing 298 n n C5' "H5'2" SFG sing 299 n n C4' O4' SFG sing 300 n n C4' C3' SFG sing 301 n n C4' H4' SFG sing 302 n n O4' C1' SFG sing 303 n n C3' O3' SFG sing 304 n n C3' C2' SFG sing 305 n n C3' H3' SFG sing 306 n n O3' HO3' SFG sing 307 n n C2' O2' SFG sing 308 n n C2' C1' SFG sing 309 n n C2' H2' SFG sing 310 n n O2' HO2' SFG sing 311 n n C1' N9 SFG sing 312 n n C1' H1' SFG sing 313 n n N9 C8 SFG sing 314 n y N9 C4 SFG sing 315 n y C8 N7 SFG doub 316 n y C8 H8 SFG sing 317 n n N7 C5 SFG sing 318 n y C5 C6 SFG sing 319 n y C5 C4 SFG doub 320 n y C6 N6 SFG sing 321 n n C6 N1 SFG doub 322 n y N6 HN61 SFG sing 323 n n N6 HN62 SFG sing 324 n n N1 C2 SFG sing 325 n y C2 N3 SFG doub 326 n y C2 H2 SFG sing 327 n n N3 C4 SFG sing 328 n y # _atom_sites.entry_id 2ZBR _atom_sites.fract_transf_matrix[1][1] 0.012154 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.010443 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013249 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021251 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SFG A 1 300 300 SFG SFG . C 3 HOH A 1 301 301 HOH HOH . C 3 HOH A 2 302 302 HOH HOH . C 3 HOH A 3 303 303 HOH HOH . C 3 HOH A 4 304 304 HOH HOH . C 3 HOH A 5 305 305 HOH HOH . C 3 HOH A 6 306 306 HOH HOH . C 3 HOH A 7 307 307 HOH HOH . C 3 HOH A 8 308 308 HOH HOH . C 3 HOH A 9 309 309 HOH HOH . C 3 HOH A 10 310 310 HOH HOH . C 3 HOH A 11 311 311 HOH HOH . C 3 HOH A 12 312 312 HOH HOH . C 3 HOH A 13 313 313 HOH HOH . C 3 HOH A 14 314 314 HOH HOH . C 3 HOH A 15 315 315 HOH HOH . C 3 HOH A 16 316 316 HOH HOH . C 3 HOH A 17 317 317 HOH HOH . C 3 HOH A 18 318 318 HOH HOH . C 3 HOH A 19 319 319 HOH HOH . C 3 HOH A 20 320 320 HOH HOH . C 3 HOH A 21 321 321 HOH HOH . C 3 HOH A 22 322 322 HOH HOH . C 3 HOH A 23 323 323 HOH HOH . C 3 HOH A 24 324 324 HOH HOH . C 3 HOH A 25 325 325 HOH HOH . C 3 HOH A 26 326 326 HOH HOH . C 3 HOH A 27 327 327 HOH HOH . C 3 HOH A 28 328 328 HOH HOH . C 3 HOH A 29 329 329 HOH HOH . C 3 HOH A 30 330 330 HOH HOH . C 3 HOH A 31 331 331 HOH HOH . C 3 HOH A 32 332 332 HOH HOH . C 3 HOH A 33 333 333 HOH HOH . C 3 HOH A 34 334 334 HOH HOH . C 3 HOH A 35 335 335 HOH HOH . C 3 HOH A 36 336 336 HOH HOH . C 3 HOH A 37 337 337 HOH HOH . C 3 HOH A 38 338 338 HOH HOH . C 3 HOH A 39 339 339 HOH HOH . C 3 HOH A 40 340 340 HOH HOH . C 3 HOH A 41 341 341 HOH HOH . C 3 HOH A 42 342 342 HOH HOH . C 3 HOH A 43 343 343 HOH HOH . C 3 HOH A 44 344 344 HOH HOH . C 3 HOH A 45 345 345 HOH HOH . C 3 HOH A 46 346 346 HOH HOH . C 3 HOH A 47 347 347 HOH HOH . C 3 HOH A 48 348 348 HOH HOH . C 3 HOH A 49 349 349 HOH HOH . C 3 HOH A 50 350 350 HOH HOH . C 3 HOH A 51 351 351 HOH HOH . C 3 HOH A 52 352 352 HOH HOH . C 3 HOH A 53 353 353 HOH HOH . C 3 HOH A 54 354 354 HOH HOH . C 3 HOH A 55 355 355 HOH HOH . C 3 HOH A 56 356 356 HOH HOH . C 3 HOH A 57 357 357 HOH HOH . C 3 HOH A 58 358 358 HOH HOH . C 3 HOH A 59 359 359 HOH HOH . C 3 HOH A 60 360 360 HOH HOH . C 3 HOH A 61 361 361 HOH HOH . C 3 HOH A 62 362 362 HOH HOH . C 3 HOH A 63 363 363 HOH HOH . C 3 HOH A 64 364 364 HOH HOH . C 3 HOH A 65 365 365 HOH HOH . C 3 HOH A 66 366 366 HOH HOH . C 3 HOH A 67 367 367 HOH HOH . C 3 HOH A 68 368 368 HOH HOH . C 3 HOH A 69 369 369 HOH HOH . C 3 HOH A 70 370 370 HOH HOH . C 3 HOH A 71 371 371 HOH HOH . C 3 HOH A 72 372 372 HOH HOH . C 3 HOH A 73 373 373 HOH HOH . C 3 HOH A 74 374 374 HOH HOH . C 3 HOH A 75 375 375 HOH HOH . C 3 HOH A 76 376 376 HOH HOH . C 3 HOH A 77 377 377 HOH HOH . C 3 HOH A 78 378 378 HOH HOH . C 3 HOH A 79 379 379 HOH HOH . C 3 HOH A 80 380 380 HOH HOH . C 3 HOH A 81 381 381 HOH HOH . C 3 HOH A 82 382 382 HOH HOH . C 3 HOH A 83 383 383 HOH HOH . C 3 HOH A 84 384 384 HOH HOH . C 3 HOH A 85 385 385 HOH HOH . C 3 HOH A 86 386 386 HOH HOH . C 3 HOH A 87 387 387 HOH HOH . C 3 HOH A 88 388 388 HOH HOH . C 3 HOH A 89 389 389 HOH HOH . C 3 HOH A 90 390 390 HOH HOH . C 3 HOH A 91 391 391 HOH HOH . C 3 HOH A 92 392 392 HOH HOH . C 3 HOH A 93 393 393 HOH HOH . C 3 HOH A 94 394 394 HOH HOH . C 3 HOH A 95 395 395 HOH HOH . C 3 HOH A 96 396 396 HOH HOH . C 3 HOH A 97 397 397 HOH HOH . C 3 HOH A 98 398 398 HOH HOH . C 3 HOH A 99 399 399 HOH HOH . C 3 HOH A 100 400 400 HOH HOH . C 3 HOH A 101 401 401 HOH HOH . C 3 HOH A 102 402 402 HOH HOH . C 3 HOH A 103 403 403 HOH HOH . C 3 HOH A 104 404 404 HOH HOH . C 3 HOH A 105 405 405 HOH HOH . C 3 HOH A 106 406 406 HOH HOH . C 3 HOH A 107 407 407 HOH HOH . C 3 HOH A 108 408 408 HOH HOH . C 3 HOH A 109 409 409 HOH HOH . C 3 HOH A 110 410 410 HOH HOH . C 3 HOH A 111 411 411 HOH HOH . C 3 HOH A 112 412 412 HOH HOH . C 3 HOH A 113 413 413 HOH HOH . C 3 HOH A 114 414 414 HOH HOH . C 3 HOH A 115 415 415 HOH HOH . C 3 HOH A 116 416 416 HOH HOH . C 3 HOH A 117 417 417 HOH HOH . C 3 HOH A 118 418 418 HOH HOH . C 3 HOH A 119 419 419 HOH HOH . C 3 HOH A 120 420 420 HOH HOH . C 3 HOH A 121 421 421 HOH HOH . C 3 HOH A 122 422 422 HOH HOH . C 3 HOH A 123 423 423 HOH HOH . C 3 HOH A 124 424 424 HOH HOH . C 3 HOH A 125 425 425 HOH HOH . C 3 HOH A 126 426 426 HOH HOH . C 3 HOH A 127 427 427 HOH HOH . C 3 HOH A 128 428 428 HOH HOH . C 3 HOH A 129 429 429 HOH HOH . C 3 HOH A 130 430 430 HOH HOH . C 3 HOH A 131 431 431 HOH HOH . C 3 HOH A 132 432 432 HOH HOH . C 3 HOH A 133 433 433 HOH HOH . C 3 HOH A 134 434 434 HOH HOH . C 3 HOH A 135 435 435 HOH HOH . C 3 HOH A 136 436 436 HOH HOH . C 3 HOH A 137 437 437 HOH HOH . C 3 HOH A 138 438 438 HOH HOH . C 3 HOH A 139 439 439 HOH HOH . C 3 HOH A 140 440 440 HOH HOH . C 3 HOH A 141 441 441 HOH HOH . C 3 HOH A 142 442 442 HOH HOH . C 3 HOH A 143 443 443 HOH HOH . C 3 HOH A 144 444 444 HOH HOH . C 3 HOH A 145 445 445 HOH HOH . C 3 HOH A 146 446 446 HOH HOH . C 3 HOH A 147 447 447 HOH HOH . C 3 HOH A 148 448 448 HOH HOH . C 3 HOH A 149 449 449 HOH HOH . C 3 HOH A 150 450 450 HOH HOH . C 3 HOH A 151 451 451 HOH HOH . C 3 HOH A 152 452 452 HOH HOH . C 3 HOH A 153 453 453 HOH HOH . C 3 HOH A 154 454 454 HOH HOH . C 3 HOH A 155 455 455 HOH HOH . C 3 HOH A 156 456 456 HOH HOH . C 3 HOH A 157 457 457 HOH HOH . C 3 HOH A 158 458 458 HOH HOH . C 3 HOH A 159 459 459 HOH HOH . C 3 HOH A 160 460 460 HOH HOH . C 3 HOH A 161 461 461 HOH HOH . C 3 HOH A 162 462 462 HOH HOH . C 3 HOH A 163 463 463 HOH HOH . C 3 HOH A 164 464 464 HOH HOH . C 3 HOH A 165 465 465 HOH HOH . C 3 HOH A 166 466 466 HOH HOH . C 3 HOH A 167 467 467 HOH HOH . C 3 HOH A 168 468 468 HOH HOH . C 3 HOH A 169 469 469 HOH HOH . C 3 HOH A 170 470 470 HOH HOH . C 3 HOH A 171 471 471 HOH HOH . C 3 HOH A 172 472 472 HOH HOH . C 3 HOH A 173 473 473 HOH HOH . C 3 HOH A 174 474 474 HOH HOH . C 3 HOH A 175 475 475 HOH HOH . C 3 HOH A 176 476 476 HOH HOH . C 3 HOH A 177 477 477 HOH HOH . C 3 HOH A 178 478 478 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SFG . . . B 2 29.465 46.072 15.005 1 30.3 ? N SFG 300 A 1 HETATM 2 C CA SFG . . . B 2 29.08 44.748 15.512 1 33.22 ? CA SFG 300 A 1 HETATM 3 C C SFG . . . B 2 28.757 43.821 14.337 1 34.15 ? C SFG 300 A 1 HETATM 4 O O SFG . . . B 2 28.774 44.227 13.175 1 30.69 ? O SFG 300 A 1 HETATM 5 O OXT SFG . . . B 2 28.477 42.643 14.552 1 36.71 ? OXT SFG 300 A 1 HETATM 6 C CB SFG . . . B 2 27.886 44.856 16.469 1 35.4 ? CB SFG 300 A 1 HETATM 7 C CG SFG . . . B 2 26.728 45.68 15.895 1 35.56 ? CG SFG 300 A 1 HETATM 8 C CD SFG . . . B 2 25.457 45.593 16.746 1 38.31 ? CD SFG 300 A 1 HETATM 9 N NE SFG . . . B 2 24.446 44.842 15.987 1 41.38 ? NE SFG 300 A 1 HETATM 10 C C5' SFG . . . B 2 24.897 46.993 17.012 1 36.41 ? C5' SFG 300 A 1 HETATM 11 C C4' SFG . . . B 2 25.57 47.691 18.201 1 36.95 ? C4' SFG 300 A 1 HETATM 12 O O4' SFG . . . B 2 25.251 49.091 18.111 1 36.24 ? O4' SFG 300 A 1 HETATM 13 C C3' SFG . . . B 2 25.065 47.217 19.57 1 34.11 ? C3' SFG 300 A 1 HETATM 14 O O3' SFG . . . B 2 26.165 46.855 20.407 1 34.89 ? O3' SFG 300 A 1 HETATM 15 C C2' SFG . . . B 2 24.328 48.439 20.128 1 33.28 ? C2' SFG 300 A 1 HETATM 16 O O2' SFG . . . B 2 24.513 48.549 21.543 1 29.82 ? O2' SFG 300 A 1 HETATM 17 C C1' SFG . . . B 2 25.106 49.57 19.456 1 33.08 ? C1' SFG 300 A 1 HETATM 18 N N9 SFG . . . B 2 24.331 50.827 19.348 1 32.63 ? N9 SFG 300 A 1 HETATM 19 C C8 SFG . . . B 2 23.036 50.924 19.044 1 34.16 ? C8 SFG 300 A 1 HETATM 20 N N7 SFG . . . B 2 22.736 52.192 18.768 1 34.75 ? N7 SFG 300 A 1 HETATM 21 C C5 SFG . . . B 2 23.847 52.907 18.915 1 33.92 ? C5 SFG 300 A 1 HETATM 22 C C6 SFG . . . B 2 24.146 54.254 18.75 1 34.75 ? C6 SFG 300 A 1 HETATM 23 N N6 SFG . . . B 2 23.188 55.126 18.443 1 33.46 ? N6 SFG 300 A 1 HETATM 24 N N1 SFG . . . B 2 25.464 54.677 18.97 1 33.38 ? N1 SFG 300 A 1 HETATM 25 C C2 SFG . . . B 2 26.438 53.748 19.358 1 31.72 ? C2 SFG 300 A 1 HETATM 26 N N3 SFG . . . B 2 26.118 52.475 19.513 1 29.12 ? N3 SFG 300 A 1 HETATM 27 C C4 SFG . . . B 2 24.866 52.042 19.298 1 34.14 ? C4 SFG 300 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #