data_2ZC3
#
_model_server_result.job_id            2IkFnEw6RLSIjMirlQB6hw 
_model_server_result.datetime_utc      '2024-10-14 13:25:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2zc3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":801}' 
#
_entry.id    2ZC3 
#
_exptl.entry_id    2ZC3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              352.409 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(4R,5S)-3-(6,7-dihydro-5H-pyrazolo[1,2-a][1,2,4]triazol-4-ium-6-ylsulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-4-meth yl-4,5-dihydro-1H-pyrrole-2-carboxylate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2ZC3 
_cell.length_a            106.789 
_cell.length_b            171.909 
_cell.length_c            88.666 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZC3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
PISA hexameric 6 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,J,K,L 1 1 
D,E,F,H,I,M,N,O 2 1 
A,B,C,G,J,K,L 3 2 
D,E,F,H,I,M,N,O 3 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 0 0 -88.666 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B OG SER 97 B SER 337 1_555 G C7 BMG . B BMG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? 
covale ? covale2 E OG SER 97 E SER 337 1_555 I C7 BMG . E BMG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.365 ? 
#
_chem_comp.formula           'C15 H20 N4 O4 S' 
_chem_comp.formula_weight    352.409 
_chem_comp.id                BMG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(4R,5S)-3-(6,7-dihydro-5H-pyrazolo[1,2-a][1,2,4]triazol-4-ium-6-ylsulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-4-meth yl-4,5-dihydro-1H-pyrrole-2-carboxylate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(4R,5S)-3-(6,7-dihydro-5H-pyrazolo[1,2-a][1,2,4]triazol-4-ium-6-ylthio)-5-((2S,3R)-3-hydroxy-1-oxobutan-2-yl)-4- methyl-4,5-dihydro-1H-pyrrole-2-carboxylate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C9 C8 BMG sing 70 n n 
C10 C1 BMG sing 71 n n 
O15 C8 BMG sing 72 n n 
C8 C6 BMG sing 73 n n 
C6 C5 BMG sing 74 n n 
C6 C7 BMG sing 75 n n 
C1 C5 BMG sing 76 n n 
C1 C2 BMG sing 77 n n 
S16 C2 BMG sing 78 n n 
S16 C17 BMG sing 79 n n 
C18 C17 BMG sing 80 n n 
C18 N19 BMG sing 81 n n 
O14 C7 BMG doub 82 n n 
C5 N4 BMG sing 83 n n 
C2 C3 BMG doub 84 n n 
C17 C24 BMG sing 85 n n 
N19 C20 BMG doub 86 n y 
N19 N23 BMG sing 87 n y 
C20 N21 BMG sing 88 n y 
C3 N4 BMG sing 89 n n 
C3 C11 BMG sing 90 n n 
C24 N23 BMG sing 91 n n 
N23 C22 BMG sing 92 n y 
O12 C11 BMG doub 93 n n 
N21 C22 BMG doub 94 n y 
C11 O13 BMG sing 95 n n 
C1 H1 BMG sing 96 n n 
C5 H5 BMG sing 97 n n 
C6 H6 BMG sing 98 n n 
C7 H7 BMG sing 99 n n 
C8 H8 BMG sing 100 n n 
C17 H17 BMG sing 101 n n 
C18 H18 BMG sing 102 n n 
C18 H18A BMG sing 103 n n 
C20 H20 BMG sing 104 n n 
C22 H22 BMG sing 105 n n 
C9 H9 BMG sing 106 n n 
C9 H9A BMG sing 107 n n 
C9 H9B BMG sing 108 n n 
O15 HO15 BMG sing 109 n n 
C10 H10 BMG sing 110 n n 
C10 H10A BMG sing 111 n n 
C10 H10B BMG sing 112 n n 
N4 HN4 BMG sing 113 n n 
C24 H24 BMG sing 114 n n 
C24 H24A BMG sing 115 n n 
#
_atom_sites.entry_id                     2ZC3 
_atom_sites.fract_transf_matrix[1][1]    0.009364 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005817 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011278 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 BMG B 1 801 801 BMG BIM . 
H 5 SO4 E 1 901 901 SO4 SO4 . 
I 4 BMG E 1 801 801 BMG BIM . 
J 6 HOH A 1 239 2 HOH HOH . 
J 6 HOH A 2 240 5 HOH HOH . 
J 6 HOH A 3 241 22 HOH HOH . 
J 6 HOH A 4 242 46 HOH HOH . 
J 6 HOH A 5 243 64 HOH HOH . 
K 6 HOH B 1 802 4 HOH HOH . 
K 6 HOH B 2 803 7 HOH HOH . 
K 6 HOH B 3 804 16 HOH HOH . 
K 6 HOH B 4 805 17 HOH HOH . 
K 6 HOH B 5 806 31 HOH HOH . 
K 6 HOH B 6 807 33 HOH HOH . 
K 6 HOH B 7 808 34 HOH HOH . 
K 6 HOH B 8 809 35 HOH HOH . 
K 6 HOH B 9 810 36 HOH HOH . 
K 6 HOH B 10 811 37 HOH HOH . 
K 6 HOH B 11 812 38 HOH HOH . 
K 6 HOH B 12 813 39 HOH HOH . 
K 6 HOH B 13 814 42 HOH HOH . 
K 6 HOH B 14 815 49 HOH HOH . 
K 6 HOH B 15 816 60 HOH HOH . 
K 6 HOH B 16 817 70 HOH HOH . 
K 6 HOH B 17 818 72 HOH HOH . 
K 6 HOH B 18 819 73 HOH HOH . 
K 6 HOH B 19 820 80 HOH HOH . 
K 6 HOH B 20 821 81 HOH HOH . 
K 6 HOH B 21 822 8 HOH HOH . 
L 6 HOH C 1 751 15 HOH HOH . 
L 6 HOH C 2 752 21 HOH HOH . 
L 6 HOH C 3 753 55 HOH HOH . 
L 6 HOH C 4 754 67 HOH HOH . 
M 6 HOH D 1 239 3 HOH HOH . 
M 6 HOH D 2 240 10 HOH HOH . 
M 6 HOH D 3 241 13 HOH HOH . 
M 6 HOH D 4 242 20 HOH HOH . 
M 6 HOH D 5 243 25 HOH HOH . 
M 6 HOH D 6 244 26 HOH HOH . 
M 6 HOH D 7 245 27 HOH HOH . 
M 6 HOH D 8 246 32 HOH HOH . 
M 6 HOH D 9 247 41 HOH HOH . 
M 6 HOH D 10 248 47 HOH HOH . 
M 6 HOH D 11 249 52 HOH HOH . 
M 6 HOH D 12 250 65 HOH HOH . 
M 6 HOH D 13 251 77 HOH HOH . 
M 6 HOH D 14 252 79 HOH HOH . 
N 6 HOH E 1 902 1 HOH HOH . 
N 6 HOH E 2 903 9 HOH HOH . 
N 6 HOH E 3 904 11 HOH HOH . 
N 6 HOH E 4 905 12 HOH HOH . 
N 6 HOH E 5 906 14 HOH HOH . 
N 6 HOH E 6 907 18 HOH HOH . 
N 6 HOH E 7 908 19 HOH HOH . 
N 6 HOH E 8 909 23 HOH HOH . 
N 6 HOH E 9 910 28 HOH HOH . 
N 6 HOH E 10 911 29 HOH HOH . 
N 6 HOH E 11 912 30 HOH HOH . 
N 6 HOH E 12 913 40 HOH HOH . 
N 6 HOH E 13 914 43 HOH HOH . 
N 6 HOH E 14 915 44 HOH HOH . 
N 6 HOH E 15 916 45 HOH HOH . 
N 6 HOH E 16 917 48 HOH HOH . 
N 6 HOH E 17 918 50 HOH HOH . 
N 6 HOH E 18 919 53 HOH HOH . 
N 6 HOH E 19 920 54 HOH HOH . 
N 6 HOH E 20 921 56 HOH HOH . 
N 6 HOH E 21 922 61 HOH HOH . 
N 6 HOH E 22 923 62 HOH HOH . 
N 6 HOH E 23 924 66 HOH HOH . 
N 6 HOH E 24 925 68 HOH HOH . 
N 6 HOH E 25 926 69 HOH HOH . 
N 6 HOH E 26 927 71 HOH HOH . 
N 6 HOH E 27 928 74 HOH HOH . 
N 6 HOH E 28 929 75 HOH HOH . 
N 6 HOH E 29 930 76 HOH HOH . 
N 6 HOH E 30 931 78 HOH HOH . 
N 6 HOH E 31 932 82 HOH HOH . 
O 6 HOH F 1 751 6 HOH HOH . 
O 6 HOH F 2 752 24 HOH HOH . 
O 6 HOH F 3 753 51 HOH HOH . 
O 6 HOH F 4 754 57 HOH HOH . 
O 6 HOH F 5 755 58 HOH HOH . 
O 6 HOH F 6 756 59 HOH HOH . 
O 6 HOH F 7 757 63 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BMG . . . I 4 35.63 61.94 -31.258 1 47.4 ? C1 BMG 801 E 1 
HETATM 2 C C3 BMG . . . I 4 34.738 60.69 -29.459 1 48.69 ? C3 BMG 801 E 1 
HETATM 3 C C5 BMG . . . I 4 36.787 61.117 -30.564 1 45.89 ? C5 BMG 801 E 1 
HETATM 4 C C6 BMG . . . I 4 37.449 59.967 -31.362 1 43.58 ? C6 BMG 801 E 1 
HETATM 5 C C7 BMG . . . I 4 37.572 58.724 -30.531 1 41.16 ? C7 BMG 801 E 1 
HETATM 6 C C8 BMG . . . I 4 38.856 60.303 -31.866 1 44.24 ? C8 BMG 801 E 1 
HETATM 7 C C11 BMG . . . I 4 33.927 60.012 -28.318 1 49.39 ? C11 BMG 801 E 1 
HETATM 8 C C17 BMG . . . I 4 32.198 63.05 -30.238 1 53.75 ? C17 BMG 801 E 1 
HETATM 9 C C18 BMG . . . I 4 31.02 63.667 -31.047 1 54.74 ? C18 BMG 801 E 1 
HETATM 10 C C20 BMG . . . I 4 29.042 64.883 -29.753 1 56.53 ? C20 BMG 801 E 1 
HETATM 11 C C22 BMG . . . I 4 29.559 63.991 -27.868 1 56.32 ? C22 BMG 801 E 1 
HETATM 12 C C9 BMG . . . I 4 39.328 59.316 -32.938 1 44.84 ? C9 BMG 801 E 1 
HETATM 13 O O14 BMG . . . I 4 37.052 57.665 -30.801 1 41.82 ? O14 BMG 801 E 1 
HETATM 14 O O15 BMG . . . I 4 38.767 61.634 -32.423 1 45.26 ? O15 BMG 801 E 1 
HETATM 15 C C10 BMG . . . I 4 35.496 61.804 -32.787 1 47.01 ? C10 BMG 801 E 1 
HETATM 16 N N4 BMG . . . I 4 36.113 60.61 -29.36 1 46.96 ? N4 BMG 801 E 1 
HETATM 17 O O13 BMG . . . I 4 34.412 60.157 -27.174 1 50.04 ? O13 BMG 801 E 1 
HETATM 18 O O12 BMG . . . I 4 32.894 59.414 -28.66 1 49.85 ? O12 BMG 801 E 1 
HETATM 19 C C2 BMG . . . I 4 34.385 61.359 -30.554 1 48.99 ? C2 BMG 801 E 1 
HETATM 20 S S16 BMG . . . I 4 32.766 61.581 -31.153 1 51.75 ? S16 BMG 801 E 1 
HETATM 21 C C24 BMG . . . I 4 31.623 62.638 -28.861 1 54.85 ? C24 BMG 801 E 1 
HETATM 22 N N23 BMG . . . I 4 30.424 63.543 -28.753 1 55.84 ? N23 BMG 801 E 1 
HETATM 23 N N19 BMG . . . I 4 30.099 64.109 -29.963 1 55.76 ? N19 BMG 801 E 1 
HETATM 24 N N21 BMG . . . I 4 28.687 64.828 -28.464 1 57.42 ? N21 BMG 801 E 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           373 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           24 
#