data_2ZC5
#
_model_server_result.job_id            fe97n--G2iVqOtZnuI-WWQ 
_model_server_result.datetime_utc      '2024-12-26 22:38:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2zc5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":701}' 
#
_entry.id    2ZC5 
#
_exptl.entry_id    2ZC5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              352.409 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(4R,5S)-3-(6,7-dihydro-5H-pyrazolo[1,2-a][1,2,4]triazol-4-ium-6-ylsulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-4-meth yl-4,5-dihydro-1H-pyrrole-2-carboxylate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2ZC5 
_cell.length_a            185.704 
_cell.length_b            50.665 
_cell.length_c            110.784 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZC5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,O 1 1 
C,D,J,K,L,M,N,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B OG SER 107 B SER 370 1_555 I C7 BMG . B BMG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? 
covale ? covale2 D OG SER 107 D SER 370 1_555 N C7 BMG . D BMG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.362 ? 
metalc ? metalc1 B ND1 HIS 46 B HIS 309 1_555 E ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc2 B ND1 HIS 132 B HIS 395 1_555 F ZN ZN . B ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc3 B OE1 GLU 172 B GLU 435 1_555 F ZN ZN . B ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? 
metalc ? metalc4 B ND1 HIS 197 B HIS 460 1_555 G ZN ZN . B ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc5 D ND1 HIS 46 D HIS 309 1_555 J ZN ZN . D ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc6 D OE2 GLU 55 D GLU 318 1_555 M ZN ZN . D ZN 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc7 D OH TYR 56 D TYR 319 1_555 M ZN ZN . D ZN 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc8 D ND1 HIS 132 D HIS 395 1_555 K ZN ZN . D ZN 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc9 D OE2 GLU 172 D GLU 435 1_555 K ZN ZN . D ZN 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.802 ? 
metalc ? metalc10 D ND1 HIS 197 D HIS 460 1_555 L ZN ZN . D ZN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
#
_chem_comp.formula           'C15 H20 N4 O4 S' 
_chem_comp.formula_weight    352.409 
_chem_comp.id                BMG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(4R,5S)-3-(6,7-dihydro-5H-pyrazolo[1,2-a][1,2,4]triazol-4-ium-6-ylsulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-4-meth yl-4,5-dihydro-1H-pyrrole-2-carboxylate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(4R,5S)-3-(6,7-dihydro-5H-pyrazolo[1,2-a][1,2,4]triazol-4-ium-6-ylthio)-5-((2S,3R)-3-hydroxy-1-oxobutan-2-yl)-4- methyl-4,5-dihydro-1H-pyrrole-2-carboxylate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C9 C8 BMG sing 70 n n 
C10 C1 BMG sing 71 n n 
O15 C8 BMG sing 72 n n 
C8 C6 BMG sing 73 n n 
C6 C5 BMG sing 74 n n 
C6 C7 BMG sing 75 n n 
C1 C5 BMG sing 76 n n 
C1 C2 BMG sing 77 n n 
S16 C2 BMG sing 78 n n 
S16 C17 BMG sing 79 n n 
C18 C17 BMG sing 80 n n 
C18 N19 BMG sing 81 n n 
O14 C7 BMG doub 82 n n 
C5 N4 BMG sing 83 n n 
C2 C3 BMG doub 84 n n 
C17 C24 BMG sing 85 n n 
N19 C20 BMG doub 86 n y 
N19 N23 BMG sing 87 n y 
C20 N21 BMG sing 88 n y 
C3 N4 BMG sing 89 n n 
C3 C11 BMG sing 90 n n 
C24 N23 BMG sing 91 n n 
N23 C22 BMG sing 92 n y 
O12 C11 BMG doub 93 n n 
N21 C22 BMG doub 94 n y 
C11 O13 BMG sing 95 n n 
C1 H1 BMG sing 96 n n 
C5 H5 BMG sing 97 n n 
C6 H6 BMG sing 98 n n 
C7 H7 BMG sing 99 n n 
C8 H8 BMG sing 100 n n 
C17 H17 BMG sing 101 n n 
C18 H18 BMG sing 102 n n 
C18 H18A BMG sing 103 n n 
C20 H20 BMG sing 104 n n 
C22 H22 BMG sing 105 n n 
C9 H9 BMG sing 106 n n 
C9 H9A BMG sing 107 n n 
C9 H9B BMG sing 108 n n 
O15 HO15 BMG sing 109 n n 
C10 H10 BMG sing 110 n n 
C10 H10A BMG sing 111 n n 
C10 H10B BMG sing 112 n n 
N4 HN4 BMG sing 113 n n 
C24 H24 BMG sing 114 n n 
C24 H24A BMG sing 115 n n 
#
_atom_sites.entry_id                     2ZC5 
_atom_sites.fract_transf_matrix[1][1]    0.005385 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019737 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009027 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ZN B 1 801 801 ZN ZN . 
F 3 ZN B 1 802 802 ZN ZN . 
G 3 ZN B 1 803 803 ZN ZN . 
H 3 ZN B 1 804 804 ZN ZN . 
I 4 BMG B 1 701 701 BMG BIM . 
J 3 ZN D 1 805 805 ZN ZN . 
K 3 ZN D 1 806 806 ZN ZN . 
L 3 ZN D 1 807 807 ZN ZN . 
M 3 ZN D 1 808 808 ZN ZN . 
N 4 BMG D 1 701 701 BMG BIM . 
O 5 HOH B 1 901 901 HOH HOH . 
O 5 HOH B 2 902 902 HOH HOH . 
O 5 HOH B 3 903 903 HOH HOH . 
O 5 HOH B 4 904 904 HOH HOH . 
P 5 HOH D 1 905 905 HOH HOH . 
P 5 HOH D 2 906 906 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BMG . . . N 4 103.49 17.717 64.974 1 44.53 ? C1 BMG 701 D 1 
HETATM 2 C C3 BMG . . . N 4 105.108 17.588 63.267 1 44.34 ? C3 BMG 701 D 1 
HETATM 3 C C5 BMG . . . N 4 104.164 16.285 64.991 1 42.83 ? C5 BMG 701 D 1 
HETATM 4 C C6 BMG . . . N 4 105.071 15.965 66.211 1 41.12 ? C6 BMG 701 D 1 
HETATM 5 C C7 BMG . . . N 4 106.444 15.49 65.8 1 39.71 ? C7 BMG 701 D 1 
HETATM 6 C C8 BMG . . . N 4 104.423 14.973 67.202 1 40.79 ? C8 BMG 701 D 1 
HETATM 7 C C11 BMG . . . N 4 106.249 17.763 62.229 1 43.71 ? C11 BMG 701 D 1 
HETATM 8 C C17 BMG . . . N 4 102.925 19.846 61.919 1 52.01 ? C17 BMG 701 D 1 
HETATM 9 C C18 BMG . . . N 4 101.745 20.857 61.808 1 53.21 ? C18 BMG 701 D 1 
HETATM 10 C C20 BMG . . . N 4 100.389 20.604 59.512 1 54.84 ? C20 BMG 701 D 1 
HETATM 11 C C22 BMG . . . N 4 102.112 19.922 58.449 1 54.81 ? C22 BMG 701 D 1 
HETATM 12 C C9 BMG . . . N 4 105.266 14.695 68.457 1 40.47 ? C9 BMG 701 D 1 
HETATM 13 O O14 BMG . . . N 4 107.473 16.111 65.96 1 38.85 ? O14 BMG 701 D 1 
HETATM 14 O O15 BMG . . . N 4 103.152 15.547 67.592 1 39.77 ? O15 BMG 701 D 1 
HETATM 15 C C10 BMG . . . N 4 103.559 18.535 66.279 1 44.23 ? C10 BMG 701 D 1 
HETATM 16 N N4 BMG . . . N 4 104.889 16.294 63.714 1 43.22 ? N4 BMG 701 D 1 
HETATM 17 O O13 BMG . . . N 4 106.584 16.701 61.666 1 43.6 ? O13 BMG 701 D 1 
HETATM 18 O O12 BMG . . . N 4 106.692 18.915 62.074 1 43.18 ? O12 BMG 701 D 1 
HETATM 19 C C2 BMG . . . N 4 104.253 18.437 63.842 1 45.68 ? C2 BMG 701 D 1 
HETATM 20 S S16 BMG . . . N 4 103.945 20.106 63.418 1 48.78 ? S16 BMG 701 D 1 
HETATM 21 C C24 BMG . . . N 4 103.697 20.091 60.598 1 53.3 ? C24 BMG 701 D 1 
HETATM 22 N N23 BMG . . . N 4 102.496 20.15 59.689 1 54.3 ? N23 BMG 701 D 1 
HETATM 23 N N19 BMG . . . N 4 101.393 20.586 60.381 1 54.24 ? N19 BMG 701 D 1 
HETATM 24 N N21 BMG . . . N 4 100.801 20.195 58.31 1 55.03 ? N21 BMG 701 D 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           24 
#