data_2ZC9 # _model_server_result.job_id 2hNv7O2llK15sNjg5Jt5Qw _model_server_result.datetime_utc '2024-11-26 08:33:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zc9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1602}' # _entry.id 2ZC9 # _exptl.entry_id 2ZC9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.7 _cell.angle_gamma 90 _cell.entry_id 2ZC9 _cell.length_a 70.4 _cell.length_b 71.3 _cell.length_c 72.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZC9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? covale ? covale1 C C GLU 9 I GLU 62 1_555 C N TYS 10 I TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2ZC9 _atom_sites.fract_transf_matrix[1][1] 0.014205 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002684 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014025 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA H 1 1601 1601 NA NA . E 4 NA H 1 1602 1602 NA NA . F 5 22U H 1 1501 1501 22U 22U . G 6 HOH L 1 2010 2010 HOH HOH . G 6 HOH L 2 2017 2017 HOH HOH . G 6 HOH L 3 2022 2022 HOH HOH . G 6 HOH L 4 2028 2028 HOH HOH . G 6 HOH L 5 2031 2031 HOH HOH . G 6 HOH L 6 2052 2052 HOH HOH . G 6 HOH L 7 2054 2054 HOH HOH . G 6 HOH L 8 2065 2065 HOH HOH . G 6 HOH L 9 2067 2067 HOH HOH . G 6 HOH L 10 2086 2086 HOH HOH . G 6 HOH L 11 2087 2087 HOH HOH . G 6 HOH L 12 2093 2093 HOH HOH . G 6 HOH L 13 2104 2104 HOH HOH . G 6 HOH L 14 2111 2111 HOH HOH . G 6 HOH L 15 2120 2120 HOH HOH . G 6 HOH L 16 2125 2125 HOH HOH . G 6 HOH L 17 2126 2126 HOH HOH . G 6 HOH L 18 2129 2129 HOH HOH . G 6 HOH L 19 2132 2132 HOH HOH . G 6 HOH L 20 2139 2139 HOH HOH . G 6 HOH L 21 2145 2145 HOH HOH . G 6 HOH L 22 2146 2146 HOH HOH . G 6 HOH L 23 2163 2163 HOH HOH . G 6 HOH L 24 2169 2169 HOH HOH . G 6 HOH L 25 2173 2173 HOH HOH . G 6 HOH L 26 2185 2185 HOH HOH . G 6 HOH L 27 2186 2186 HOH HOH . G 6 HOH L 28 2196 2196 HOH HOH . G 6 HOH L 29 2200 2200 HOH HOH . G 6 HOH L 30 2213 2213 HOH HOH . G 6 HOH L 31 2216 2216 HOH HOH . G 6 HOH L 32 2218 2218 HOH HOH . G 6 HOH L 33 2232 2232 HOH HOH . G 6 HOH L 34 2233 2233 HOH HOH . G 6 HOH L 35 2238 2238 HOH HOH . G 6 HOH L 36 2248 2248 HOH HOH . G 6 HOH L 37 2249 2249 HOH HOH . G 6 HOH L 38 2251 2251 HOH HOH . G 6 HOH L 39 2257 2257 HOH HOH . G 6 HOH L 40 2270 2270 HOH HOH . H 6 HOH H 1 2001 2001 HOH HOH . H 6 HOH H 2 2002 2002 HOH HOH . H 6 HOH H 3 2003 2003 HOH HOH . H 6 HOH H 4 2004 2004 HOH HOH . H 6 HOH H 5 2005 2005 HOH HOH . H 6 HOH H 6 2006 2006 HOH HOH . H 6 HOH H 7 2007 2007 HOH HOH . H 6 HOH H 8 2008 2008 HOH HOH . H 6 HOH H 9 2009 2009 HOH HOH . H 6 HOH H 10 2011 2011 HOH HOH . H 6 HOH H 11 2012 2012 HOH HOH . H 6 HOH H 12 2013 2013 HOH HOH . H 6 HOH H 13 2014 2014 HOH HOH . H 6 HOH H 14 2015 2015 HOH HOH . H 6 HOH H 15 2016 2016 HOH HOH . H 6 HOH H 16 2018 2018 HOH HOH . H 6 HOH H 17 2019 2019 HOH HOH . H 6 HOH H 18 2020 2020 HOH HOH . H 6 HOH H 19 2021 2021 HOH HOH . H 6 HOH H 20 2023 2023 HOH HOH . H 6 HOH H 21 2024 2024 HOH HOH . H 6 HOH H 22 2025 2025 HOH HOH . H 6 HOH H 23 2026 2026 HOH HOH . H 6 HOH H 24 2027 2027 HOH HOH . H 6 HOH H 25 2029 2029 HOH HOH . H 6 HOH H 26 2030 2030 HOH HOH . H 6 HOH H 27 2032 2032 HOH HOH . H 6 HOH H 28 2033 2033 HOH HOH . H 6 HOH H 29 2034 2034 HOH HOH . H 6 HOH H 30 2035 2035 HOH HOH . H 6 HOH H 31 2036 2036 HOH HOH . H 6 HOH H 32 2037 2037 HOH HOH . H 6 HOH H 33 2038 2038 HOH HOH . H 6 HOH H 34 2039 2039 HOH HOH . H 6 HOH H 35 2040 2040 HOH HOH . H 6 HOH H 36 2041 2041 HOH HOH . H 6 HOH H 37 2042 2042 HOH HOH . H 6 HOH H 38 2043 2043 HOH HOH . H 6 HOH H 39 2044 2044 HOH HOH . H 6 HOH H 40 2045 2045 HOH HOH . H 6 HOH H 41 2046 2046 HOH HOH . H 6 HOH H 42 2047 2047 HOH HOH . H 6 HOH H 43 2048 2048 HOH HOH . H 6 HOH H 44 2049 2049 HOH HOH . H 6 HOH H 45 2050 2050 HOH HOH . H 6 HOH H 46 2051 2051 HOH HOH . H 6 HOH H 47 2053 2053 HOH HOH . H 6 HOH H 48 2055 2055 HOH HOH . H 6 HOH H 49 2056 2056 HOH HOH . H 6 HOH H 50 2057 2057 HOH HOH . H 6 HOH H 51 2058 2058 HOH HOH . H 6 HOH H 52 2059 2059 HOH HOH . H 6 HOH H 53 2060 2060 HOH HOH . H 6 HOH H 54 2061 2061 HOH HOH . H 6 HOH H 55 2062 2062 HOH HOH . H 6 HOH H 56 2063 2063 HOH HOH . H 6 HOH H 57 2064 2064 HOH HOH . H 6 HOH H 58 2066 2066 HOH HOH . H 6 HOH H 59 2068 2068 HOH HOH . H 6 HOH H 60 2069 2069 HOH HOH . H 6 HOH H 61 2070 2070 HOH HOH . H 6 HOH H 62 2071 2071 HOH HOH . H 6 HOH H 63 2072 2072 HOH HOH . H 6 HOH H 64 2073 2073 HOH HOH . H 6 HOH H 65 2074 2074 HOH HOH . H 6 HOH H 66 2075 2075 HOH HOH . H 6 HOH H 67 2076 2076 HOH HOH . H 6 HOH H 68 2077 2077 HOH HOH . H 6 HOH H 69 2078 2078 HOH HOH . H 6 HOH H 70 2079 2079 HOH HOH . H 6 HOH H 71 2080 2080 HOH HOH . H 6 HOH H 72 2081 2081 HOH HOH . H 6 HOH H 73 2082 2082 HOH HOH . H 6 HOH H 74 2083 2083 HOH HOH . H 6 HOH H 75 2084 2084 HOH HOH . H 6 HOH H 76 2085 2085 HOH HOH . H 6 HOH H 77 2088 2088 HOH HOH . H 6 HOH H 78 2089 2089 HOH HOH . H 6 HOH H 79 2090 2090 HOH HOH . H 6 HOH H 80 2091 2091 HOH HOH . H 6 HOH H 81 2092 2092 HOH HOH . H 6 HOH H 82 2094 2094 HOH HOH . H 6 HOH H 83 2095 2095 HOH HOH . H 6 HOH H 84 2096 2096 HOH HOH . H 6 HOH H 85 2097 2097 HOH HOH . H 6 HOH H 86 2098 2098 HOH HOH . H 6 HOH H 87 2100 2100 HOH HOH . H 6 HOH H 88 2101 2101 HOH HOH . H 6 HOH H 89 2102 2102 HOH HOH . H 6 HOH H 90 2103 2103 HOH HOH . H 6 HOH H 91 2105 2105 HOH HOH . H 6 HOH H 92 2106 2106 HOH HOH . H 6 HOH H 93 2107 2107 HOH HOH . H 6 HOH H 94 2108 2108 HOH HOH . H 6 HOH H 95 2109 2109 HOH HOH . H 6 HOH H 96 2110 2110 HOH HOH . H 6 HOH H 97 2112 2112 HOH HOH . H 6 HOH H 98 2113 2113 HOH HOH . H 6 HOH H 99 2114 2114 HOH HOH . H 6 HOH H 100 2115 2115 HOH HOH . H 6 HOH H 101 2116 2116 HOH HOH . H 6 HOH H 102 2117 2117 HOH HOH . H 6 HOH H 103 2118 2118 HOH HOH . H 6 HOH H 104 2119 2119 HOH HOH . H 6 HOH H 105 2121 2121 HOH HOH . H 6 HOH H 106 2122 2122 HOH HOH . H 6 HOH H 107 2123 2123 HOH HOH . H 6 HOH H 108 2124 2124 HOH HOH . H 6 HOH H 109 2127 2127 HOH HOH . H 6 HOH H 110 2128 2128 HOH HOH . H 6 HOH H 111 2130 2130 HOH HOH . H 6 HOH H 112 2131 2131 HOH HOH . H 6 HOH H 113 2133 2133 HOH HOH . H 6 HOH H 114 2134 2134 HOH HOH . H 6 HOH H 115 2135 2135 HOH HOH . H 6 HOH H 116 2136 2136 HOH HOH . H 6 HOH H 117 2137 2137 HOH HOH . H 6 HOH H 118 2138 2138 HOH HOH . H 6 HOH H 119 2140 2140 HOH HOH . H 6 HOH H 120 2141 2141 HOH HOH . H 6 HOH H 121 2142 2142 HOH HOH . H 6 HOH H 122 2143 2143 HOH HOH . H 6 HOH H 123 2144 2144 HOH HOH . H 6 HOH H 124 2147 2147 HOH HOH . H 6 HOH H 125 2148 2148 HOH HOH . H 6 HOH H 126 2149 2149 HOH HOH . H 6 HOH H 127 2150 2150 HOH HOH . H 6 HOH H 128 2151 2151 HOH HOH . H 6 HOH H 129 2152 2152 HOH HOH . H 6 HOH H 130 2153 2153 HOH HOH . H 6 HOH H 131 2155 2155 HOH HOH . H 6 HOH H 132 2156 2156 HOH HOH . H 6 HOH H 133 2157 2157 HOH HOH . H 6 HOH H 134 2158 2158 HOH HOH . H 6 HOH H 135 2159 2159 HOH HOH . H 6 HOH H 136 2160 2160 HOH HOH . H 6 HOH H 137 2161 2161 HOH HOH . H 6 HOH H 138 2162 2162 HOH HOH . H 6 HOH H 139 2164 2164 HOH HOH . H 6 HOH H 140 2165 2165 HOH HOH . H 6 HOH H 141 2166 2166 HOH HOH . H 6 HOH H 142 2167 2167 HOH HOH . H 6 HOH H 143 2168 2168 HOH HOH . H 6 HOH H 144 2170 2170 HOH HOH . H 6 HOH H 145 2171 2171 HOH HOH . H 6 HOH H 146 2172 2172 HOH HOH . H 6 HOH H 147 2174 2174 HOH HOH . H 6 HOH H 148 2175 2175 HOH HOH . H 6 HOH H 149 2176 2176 HOH HOH . H 6 HOH H 150 2177 2177 HOH HOH . H 6 HOH H 151 2178 2178 HOH HOH . H 6 HOH H 152 2179 2179 HOH HOH . H 6 HOH H 153 2180 2180 HOH HOH . H 6 HOH H 154 2181 2181 HOH HOH . H 6 HOH H 155 2182 2182 HOH HOH . H 6 HOH H 156 2183 2183 HOH HOH . H 6 HOH H 157 2184 2184 HOH HOH . H 6 HOH H 158 2187 2187 HOH HOH . H 6 HOH H 159 2188 2188 HOH HOH . H 6 HOH H 160 2189 2189 HOH HOH . H 6 HOH H 161 2190 2190 HOH HOH . H 6 HOH H 162 2191 2191 HOH HOH . H 6 HOH H 163 2192 2192 HOH HOH . H 6 HOH H 164 2193 2193 HOH HOH . H 6 HOH H 165 2194 2194 HOH HOH . H 6 HOH H 166 2195 2195 HOH HOH . H 6 HOH H 167 2197 2197 HOH HOH . H 6 HOH H 168 2198 2198 HOH HOH . H 6 HOH H 169 2199 2199 HOH HOH . H 6 HOH H 170 2201 2201 HOH HOH . H 6 HOH H 171 2202 2202 HOH HOH . H 6 HOH H 172 2203 2203 HOH HOH . H 6 HOH H 173 2204 2204 HOH HOH . H 6 HOH H 174 2205 2205 HOH HOH . H 6 HOH H 175 2206 2206 HOH HOH . H 6 HOH H 176 2207 2207 HOH HOH . H 6 HOH H 177 2208 2208 HOH HOH . H 6 HOH H 178 2209 2209 HOH HOH . H 6 HOH H 179 2210 2210 HOH HOH . H 6 HOH H 180 2211 2211 HOH HOH . H 6 HOH H 181 2212 2212 HOH HOH . H 6 HOH H 182 2214 2214 HOH HOH . H 6 HOH H 183 2215 2215 HOH HOH . H 6 HOH H 184 2217 2217 HOH HOH . H 6 HOH H 185 2219 2219 HOH HOH . H 6 HOH H 186 2220 2220 HOH HOH . H 6 HOH H 187 2221 2221 HOH HOH . H 6 HOH H 188 2222 2222 HOH HOH . H 6 HOH H 189 2223 2223 HOH HOH . H 6 HOH H 190 2224 2224 HOH HOH . H 6 HOH H 191 2227 2227 HOH HOH . H 6 HOH H 192 2228 2228 HOH HOH . H 6 HOH H 193 2229 2229 HOH HOH . H 6 HOH H 194 2230 2230 HOH HOH . H 6 HOH H 195 2231 2231 HOH HOH . H 6 HOH H 196 2234 2234 HOH HOH . H 6 HOH H 197 2235 2235 HOH HOH . H 6 HOH H 198 2236 2236 HOH HOH . H 6 HOH H 199 2237 2237 HOH HOH . H 6 HOH H 200 2239 2239 HOH HOH . H 6 HOH H 201 2240 2240 HOH HOH . H 6 HOH H 202 2242 2242 HOH HOH . H 6 HOH H 203 2243 2243 HOH HOH . H 6 HOH H 204 2244 2244 HOH HOH . H 6 HOH H 205 2245 2245 HOH HOH . H 6 HOH H 206 2246 2246 HOH HOH . H 6 HOH H 207 2247 2247 HOH HOH . H 6 HOH H 208 2250 2250 HOH HOH . H 6 HOH H 209 2252 2252 HOH HOH . H 6 HOH H 210 2253 2253 HOH HOH . H 6 HOH H 211 2254 2254 HOH HOH . H 6 HOH H 212 2255 2255 HOH HOH . H 6 HOH H 213 2256 2256 HOH HOH . H 6 HOH H 214 2258 2258 HOH HOH . H 6 HOH H 215 2259 2259 HOH HOH . H 6 HOH H 216 2260 2260 HOH HOH . H 6 HOH H 217 2261 2261 HOH HOH . H 6 HOH H 218 2262 2262 HOH HOH . H 6 HOH H 219 2263 2263 HOH HOH . H 6 HOH H 220 2264 2264 HOH HOH . H 6 HOH H 221 2265 2265 HOH HOH . H 6 HOH H 222 2266 2266 HOH HOH . H 6 HOH H 223 2267 2267 HOH HOH . H 6 HOH H 224 2268 2268 HOH HOH . H 6 HOH H 225 2269 2269 HOH HOH . H 6 HOH H 226 2271 2271 HOH HOH . I 6 HOH I 1 2099 2099 HOH HOH . I 6 HOH I 2 2154 2154 HOH HOH . I 6 HOH I 3 2225 2225 HOH HOH . I 6 HOH I 4 2226 2226 HOH HOH . I 6 HOH I 5 2241 2241 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 18.177 _atom_site.Cartn_y -15.506 _atom_site.Cartn_z 38.245 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 12.19 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1602 _atom_site.auth_asym_id H _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #