data_2ZCH
#
_model_server_result.job_id            weBcV709JSauckn9295p-Q 
_model_server_result.datetime_utc      '2025-02-18 19:52:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2zch 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    2ZCH 
#
_exptl.entry_id    2ZCH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-alpha-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2ZCH 
_cell.length_a            87.36 
_cell.length_b            87.36 
_cell.length_c            236.332 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZCH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 P CYS 22 1_555 A SG CYS 149 P CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf2 A SG CYS 26 P CYS 42 1_555 A SG CYS 42 P CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf3 A SG CYS 128 P CYS 136 1_555 A SG CYS 195 P CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
disulf ? disulf4 A SG CYS 160 P CYS 168 1_555 A SG CYS 174 P CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
disulf ? disulf5 A SG CYS 185 P CYS 191 1_555 A SG CYS 210 P CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
disulf ? disulf6 B SG CYS 23 L CYS 23 1_555 B SG CYS 92 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
disulf ? disulf7 B SG CYS 138 L CYS 134 1_555 B SG CYS 198 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf8 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
disulf ? disulf9 C SG CYS 149 H CYS 140 1_555 C SG CYS 204 H CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NDG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-alpha-D-glucopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     N-acetyl-alpha-D-glucosamine;2-acetamido-2-deoxy-alpha-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NDG sing 237 n n 
C1 O5 NDG sing 238 n n 
C1 O1 NDG sing 239 n n 
C1 H1 NDG sing 240 n n 
C2 C3 NDG sing 241 n n 
C2 N2 NDG sing 242 n n 
C2 H2 NDG sing 243 n n 
C3 C4 NDG sing 244 n n 
C3 O3 NDG sing 245 n n 
C3 H3 NDG sing 246 n n 
C4 C5 NDG sing 247 n n 
C4 O4 NDG sing 248 n n 
C4 H4 NDG sing 249 n n 
C5 C6 NDG sing 250 n n 
C5 O5 NDG sing 251 n n 
C5 H5 NDG sing 252 n n 
C6 O6 NDG sing 253 n n 
C6 H61 NDG sing 254 n n 
C6 H62 NDG sing 255 n n 
C7 C8 NDG sing 256 n n 
C7 O7 NDG doub 257 n n 
C7 N2 NDG sing 258 n n 
C8 H81 NDG sing 259 n n 
C8 H82 NDG sing 260 n n 
C8 H83 NDG sing 261 n n 
O3 HO3 NDG sing 262 n n 
O4 HO4 NDG sing 263 n n 
O6 HO6 NDG sing 264 n n 
N2 HN2 NDG sing 265 n n 
O1 HO1 NDG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NDG DGlcpNAca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NDG N-acetyl-a-D-glucopyranosamine 'COMMON NAME' GMML 1 
NDG a-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NDG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     2ZCH 
_atom_sites.fract_transf_matrix[1][1]    0.011447 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011447 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004231 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NDG P 1 401 401 NDG NAG . 
E 4 NDG P 1 403 403 NDG NAG . 
F 5 CL P 1 2001 2001 CL CL . 
G 6 PO4 H 1 1001 1001 PO4 PO4 . 
H 7 HOH P 1 2002 51 HOH HOH . 
H 7 HOH P 2 2003 1 HOH HOH . 
H 7 HOH P 3 2004 2 HOH HOH . 
H 7 HOH P 4 2005 3 HOH HOH . 
H 7 HOH P 5 2006 4 HOH HOH . 
H 7 HOH P 6 2007 5 HOH HOH . 
H 7 HOH P 7 2008 6 HOH HOH . 
H 7 HOH P 8 2009 7 HOH HOH . 
H 7 HOH P 9 2010 8 HOH HOH . 
H 7 HOH P 10 2011 9 HOH HOH . 
H 7 HOH P 11 2012 10 HOH HOH . 
H 7 HOH P 12 2013 13 HOH HOH . 
H 7 HOH P 13 2014 14 HOH HOH . 
H 7 HOH P 14 2015 15 HOH HOH . 
H 7 HOH P 15 2016 16 HOH HOH . 
H 7 HOH P 16 2017 17 HOH HOH . 
H 7 HOH P 17 2018 18 HOH HOH . 
H 7 HOH P 18 2019 27 HOH HOH . 
H 7 HOH P 19 2020 28 HOH HOH . 
H 7 HOH P 20 2021 29 HOH HOH . 
H 7 HOH P 21 2022 30 HOH HOH . 
H 7 HOH P 22 2023 31 HOH HOH . 
H 7 HOH P 23 2024 32 HOH HOH . 
H 7 HOH P 24 2025 33 HOH HOH . 
H 7 HOH P 25 2026 36 HOH HOH . 
H 7 HOH P 26 2027 47 HOH HOH . 
H 7 HOH P 27 2028 55 HOH HOH . 
H 7 HOH P 28 2029 56 HOH HOH . 
H 7 HOH P 29 2030 59 HOH HOH . 
H 7 HOH P 30 2031 60 HOH HOH . 
H 7 HOH P 31 2032 61 HOH HOH . 
H 7 HOH P 32 2033 64 HOH HOH . 
H 7 HOH P 33 2034 65 HOH HOH . 
I 7 HOH L 1 216 11 HOH HOH . 
I 7 HOH L 2 217 19 HOH HOH . 
I 7 HOH L 3 218 20 HOH HOH . 
I 7 HOH L 4 219 34 HOH HOH . 
I 7 HOH L 5 220 35 HOH HOH . 
I 7 HOH L 6 221 37 HOH HOH . 
I 7 HOH L 7 222 38 HOH HOH . 
I 7 HOH L 8 223 39 HOH HOH . 
I 7 HOH L 9 224 40 HOH HOH . 
I 7 HOH L 10 225 41 HOH HOH . 
I 7 HOH L 11 226 42 HOH HOH . 
I 7 HOH L 12 227 48 HOH HOH . 
I 7 HOH L 13 228 49 HOH HOH . 
I 7 HOH L 14 229 50 HOH HOH . 
I 7 HOH L 15 230 52 HOH HOH . 
I 7 HOH L 16 231 53 HOH HOH . 
I 7 HOH L 17 232 54 HOH HOH . 
I 7 HOH L 18 233 57 HOH HOH . 
I 7 HOH L 19 234 58 HOH HOH . 
I 7 HOH L 20 235 62 HOH HOH . 
J 7 HOH H 1 1002 12 HOH HOH . 
J 7 HOH H 2 1003 21 HOH HOH . 
J 7 HOH H 3 1004 22 HOH HOH . 
J 7 HOH H 4 1005 23 HOH HOH . 
J 7 HOH H 5 1006 24 HOH HOH . 
J 7 HOH H 6 1007 25 HOH HOH . 
J 7 HOH H 7 1008 26 HOH HOH . 
J 7 HOH H 8 1009 43 HOH HOH . 
J 7 HOH H 9 1010 44 HOH HOH . 
J 7 HOH H 10 1011 45 HOH HOH . 
J 7 HOH H 11 1012 46 HOH HOH . 
J 7 HOH H 12 1013 63 HOH HOH . 
J 7 HOH H 13 1014 66 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NDG . . . D 4 -40.484 -26.643 -37.492 1 96.78 ? C1 NDG 401 P 1 
HETATM 2 C C2 NDG . . . D 4 -41.302 -27.378 -38.544 1 97.74 ? C2 NDG 401 P 1 
HETATM 3 C C3 NDG . . . D 4 -41.479 -28.75 -37.88 1 97.76 ? C3 NDG 401 P 1 
HETATM 4 C C4 NDG . . . D 4 -40.481 -29.068 -36.731 1 96.66 ? C4 NDG 401 P 1 
HETATM 5 C C5 NDG . . . D 4 -40.341 -27.96 -35.668 1 95.97 ? C5 NDG 401 P 1 
HETATM 6 C C6 NDG . . . D 4 -38.881 -27.673 -35.303 1 95.06 ? C6 NDG 401 P 1 
HETATM 7 C C7 NDG . . . D 4 -42.541 -25.968 -40.137 1 98.88 ? C7 NDG 401 P 1 
HETATM 8 C C8 NDG . . . D 4 -43.374 -26.382 -41.316 1 98.73 ? C8 NDG 401 P 1 
HETATM 9 O O5 NDG . . . D 4 -40.933 -26.767 -36.156 1 95.81 ? O5 NDG 401 P 1 
HETATM 10 O O3 NDG . . . D 4 -41.29 -29.717 -38.881 1 98.88 ? O3 NDG 401 P 1 
HETATM 11 O O4 NDG . . . D 4 -40.892 -30.257 -36.093 1 95.82 ? O4 NDG 401 P 1 
HETATM 12 O O6 NDG . . . D 4 -38.227 -28.588 -34.459 1 94.42 ? O6 NDG 401 P 1 
HETATM 13 O O7 NDG . . . D 4 -41.903 -24.922 -40.234 1 98.33 ? O7 NDG 401 P 1 
HETATM 14 N N2 NDG . . . D 4 -42.533 -26.748 -39.037 1 98.51 ? N2 NDG 401 P 1 
HETATM 15 O O1 NDG . . . D 4 -40.063 -25.24 -37.86 1 96.53 ? O1 NDG 401 P 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           488 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           15 
#