data_2ZCL # _model_server_result.job_id oX5VTmvWIcAUL_y7Mfs57Q _model_server_result.datetime_utc '2024-11-14 06:41:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zcl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 2ZCL # _exptl.entry_id 2ZCL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ZCL _cell.length_a 87.978 _cell.length_b 87.978 _cell.length_c 238.063 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZCL _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 P CYS 22 1_555 A SG CYS 149 P CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? disulf ? disulf2 A SG CYS 26 P CYS 42 1_555 A SG CYS 42 P CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf3 A SG CYS 128 P CYS 136 1_555 A SG CYS 195 P CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? disulf ? disulf4 A SG CYS 160 P CYS 168 1_555 A SG CYS 174 P CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? disulf ? disulf5 A SG CYS 185 P CYS 191 1_555 A SG CYS 210 P CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf6 B SG CYS 23 L CYS 23 1_555 B SG CYS 92 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? disulf ? disulf7 B SG CYS 138 L CYS 134 1_555 B SG CYS 198 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf8 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? disulf ? disulf9 C SG CYS 149 H CYS 140 1_555 C SG CYS 204 H CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2ZCL _atom_sites.fract_transf_matrix[1][1] 0.011366 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011366 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004201 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG P 1 401 401 NAG NAG . E 4 NAG P 1 403 403 NAG NAG . F 5 HOH P 1 404 1 HOH HOH . F 5 HOH P 2 405 3 HOH HOH . F 5 HOH P 3 406 9 HOH HOH . F 5 HOH P 4 407 12 HOH HOH . G 5 HOH L 1 215 2 HOH HOH . G 5 HOH L 2 216 4 HOH HOH . G 5 HOH L 3 217 5 HOH HOH . G 5 HOH L 4 218 6 HOH HOH . G 5 HOH L 5 219 8 HOH HOH . G 5 HOH L 6 220 10 HOH HOH . H 5 HOH H 1 222 7 HOH HOH . H 5 HOH H 2 223 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 4 -43.612 -33.379 -37.106 1 100 ? C1 NAG 403 P 1 HETATM 2 C C2 NAG . . . E 4 -44.709 -34.397 -36.72 1 100 ? C2 NAG 403 P 1 HETATM 3 C C3 NAG . . . E 4 -45.078 -35.282 -37.951 1 100 ? C3 NAG 403 P 1 HETATM 4 C C4 NAG . . . E 4 -45.473 -34.415 -39.131 1 100 ? C4 NAG 403 P 1 HETATM 5 C C5 NAG . . . E 4 -44.362 -33.393 -39.417 1 100 ? C5 NAG 403 P 1 HETATM 6 C C6 NAG . . . E 4 -44.771 -32.442 -40.544 1 100 ? C6 NAG 403 P 1 HETATM 7 C C7 NAG . . . E 4 -44.174 -34.577 -34.264 1 100 ? C7 NAG 403 P 1 HETATM 8 C C8 NAG . . . E 4 -43.556 -35.386 -33.137 1 100 ? C8 NAG 403 P 1 HETATM 9 N N2 NAG . . . E 4 -44.307 -35.135 -35.503 1 100 ? N2 NAG 403 P 1 HETATM 10 O O3 NAG . . . E 4 -46.156 -36.18 -37.797 1 100 ? O3 NAG 403 P 1 HETATM 11 O O4 NAG . . . E 4 -45.701 -35.268 -40.224 1 99.38 ? O4 NAG 403 P 1 HETATM 12 O O5 NAG . . . E 4 -43.986 -32.629 -38.256 1 100 ? O5 NAG 403 P 1 HETATM 13 O O6 NAG . . . E 4 -45.146 -31.196 -39.992 1 100 ? O6 NAG 403 P 1 HETATM 14 O O7 NAG . . . E 4 -44.544 -33.426 -34.001 1 100 ? O7 NAG 403 P 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #