data_2ZCW # _model_server_result.job_id 12vZDR5qPftpUcOTtlcTdA _model_server_result.datetime_utc '2024-12-22 05:59:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zcw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 2ZCW # _exptl.entry_id 2ZCW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ZCW _cell.length_a 54.05 _cell.length_b 54.05 _cell.length_c 147.718 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZCW _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 122 A ARG 121 1_555 A N MSE 123 A MSE 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C MSE 123 A MSE 122 1_555 A N ALA 124 A ALA 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 224 n n C1 H11 MPD sing 225 n n C1 H12 MPD sing 226 n n C1 H13 MPD sing 227 n n C2 O2 MPD sing 228 n n C2 CM MPD sing 229 n n C2 C3 MPD sing 230 n n O2 HO2 MPD sing 231 n n CM HM1 MPD sing 232 n n CM HM2 MPD sing 233 n n CM HM3 MPD sing 234 n n C3 C4 MPD sing 235 n n C3 H31 MPD sing 236 n n C3 H32 MPD sing 237 n n C4 O4 MPD sing 238 n n C4 C5 MPD sing 239 n n C4 H4 MPD sing 240 n n O4 HO4 MPD sing 241 n n C5 H51 MPD sing 242 n n C5 H52 MPD sing 243 n n C5 H53 MPD sing 244 n n # _atom_sites.entry_id 2ZCW _atom_sites.fract_transf_matrix[1][1] 0.018501 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018501 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00677 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPD A 1 301 301 MPD MPD . C 2 MPD A 1 302 302 MPD MPD . D 2 MPD A 1 303 303 MPD MPD . E 3 HOH A 1 304 1 HOH HOH . E 3 HOH A 2 305 2 HOH HOH . E 3 HOH A 3 306 3 HOH HOH . E 3 HOH A 4 307 4 HOH HOH . E 3 HOH A 5 308 5 HOH HOH . E 3 HOH A 6 309 6 HOH HOH . E 3 HOH A 7 310 7 HOH HOH . E 3 HOH A 8 311 8 HOH HOH . E 3 HOH A 9 312 9 HOH HOH . E 3 HOH A 10 313 10 HOH HOH . E 3 HOH A 11 314 11 HOH HOH . E 3 HOH A 12 315 12 HOH HOH . E 3 HOH A 13 316 13 HOH HOH . E 3 HOH A 14 317 14 HOH HOH . E 3 HOH A 15 318 15 HOH HOH . E 3 HOH A 16 319 16 HOH HOH . E 3 HOH A 17 320 17 HOH HOH . E 3 HOH A 18 321 18 HOH HOH . E 3 HOH A 19 322 19 HOH HOH . E 3 HOH A 20 323 20 HOH HOH . E 3 HOH A 21 324 21 HOH HOH . E 3 HOH A 22 325 22 HOH HOH . E 3 HOH A 23 326 23 HOH HOH . E 3 HOH A 24 327 24 HOH HOH . E 3 HOH A 25 328 25 HOH HOH . E 3 HOH A 26 329 26 HOH HOH . E 3 HOH A 27 330 27 HOH HOH . E 3 HOH A 28 331 28 HOH HOH . E 3 HOH A 29 332 29 HOH HOH . E 3 HOH A 30 333 30 HOH HOH . E 3 HOH A 31 334 31 HOH HOH . E 3 HOH A 32 335 32 HOH HOH . E 3 HOH A 33 336 33 HOH HOH . E 3 HOH A 34 337 34 HOH HOH . E 3 HOH A 35 338 35 HOH HOH . E 3 HOH A 36 339 36 HOH HOH . E 3 HOH A 37 340 37 HOH HOH . E 3 HOH A 38 341 38 HOH HOH . E 3 HOH A 39 342 39 HOH HOH . E 3 HOH A 40 343 40 HOH HOH . E 3 HOH A 41 344 41 HOH HOH . E 3 HOH A 42 345 42 HOH HOH . E 3 HOH A 43 346 43 HOH HOH . E 3 HOH A 44 347 44 HOH HOH . E 3 HOH A 45 348 45 HOH HOH . E 3 HOH A 46 349 46 HOH HOH . E 3 HOH A 47 350 47 HOH HOH . E 3 HOH A 48 351 48 HOH HOH . E 3 HOH A 49 352 49 HOH HOH . E 3 HOH A 50 353 50 HOH HOH . E 3 HOH A 51 354 51 HOH HOH . E 3 HOH A 52 355 52 HOH HOH . E 3 HOH A 53 356 53 HOH HOH . E 3 HOH A 54 357 54 HOH HOH . E 3 HOH A 55 358 55 HOH HOH . E 3 HOH A 56 359 56 HOH HOH . E 3 HOH A 57 360 57 HOH HOH . E 3 HOH A 58 361 58 HOH HOH . E 3 HOH A 59 362 59 HOH HOH . E 3 HOH A 60 363 60 HOH HOH . E 3 HOH A 61 364 61 HOH HOH . E 3 HOH A 62 365 62 HOH HOH . E 3 HOH A 63 366 63 HOH HOH . E 3 HOH A 64 367 64 HOH HOH . E 3 HOH A 65 368 65 HOH HOH . E 3 HOH A 66 369 66 HOH HOH . E 3 HOH A 67 370 67 HOH HOH . E 3 HOH A 68 371 68 HOH HOH . E 3 HOH A 69 372 69 HOH HOH . E 3 HOH A 70 373 70 HOH HOH . E 3 HOH A 71 374 71 HOH HOH . E 3 HOH A 72 375 72 HOH HOH . E 3 HOH A 73 376 73 HOH HOH . E 3 HOH A 74 377 74 HOH HOH . E 3 HOH A 75 378 75 HOH HOH . E 3 HOH A 76 379 76 HOH HOH . E 3 HOH A 77 380 77 HOH HOH . E 3 HOH A 78 381 78 HOH HOH . E 3 HOH A 79 382 79 HOH HOH . E 3 HOH A 80 383 80 HOH HOH . E 3 HOH A 81 384 81 HOH HOH . E 3 HOH A 82 385 82 HOH HOH . E 3 HOH A 83 386 83 HOH HOH . E 3 HOH A 84 387 84 HOH HOH . E 3 HOH A 85 388 85 HOH HOH . E 3 HOH A 86 389 86 HOH HOH . E 3 HOH A 87 390 87 HOH HOH . E 3 HOH A 88 391 88 HOH HOH . E 3 HOH A 89 392 89 HOH HOH . E 3 HOH A 90 393 90 HOH HOH . E 3 HOH A 91 394 91 HOH HOH . E 3 HOH A 92 395 92 HOH HOH . E 3 HOH A 93 396 93 HOH HOH . E 3 HOH A 94 397 94 HOH HOH . E 3 HOH A 95 398 95 HOH HOH . E 3 HOH A 96 399 96 HOH HOH . E 3 HOH A 97 400 97 HOH HOH . E 3 HOH A 98 401 98 HOH HOH . E 3 HOH A 99 402 99 HOH HOH . E 3 HOH A 100 403 100 HOH HOH . E 3 HOH A 101 404 101 HOH HOH . E 3 HOH A 102 405 102 HOH HOH . E 3 HOH A 103 406 103 HOH HOH . E 3 HOH A 104 407 104 HOH HOH . E 3 HOH A 105 408 105 HOH HOH . E 3 HOH A 106 409 106 HOH HOH . E 3 HOH A 107 410 107 HOH HOH . E 3 HOH A 108 411 108 HOH HOH . E 3 HOH A 109 412 109 HOH HOH . E 3 HOH A 110 413 110 HOH HOH . E 3 HOH A 111 414 111 HOH HOH . E 3 HOH A 112 415 112 HOH HOH . E 3 HOH A 113 416 113 HOH HOH . E 3 HOH A 114 417 114 HOH HOH . E 3 HOH A 115 418 115 HOH HOH . E 3 HOH A 116 419 116 HOH HOH . E 3 HOH A 117 420 117 HOH HOH . E 3 HOH A 118 421 118 HOH HOH . E 3 HOH A 119 422 119 HOH HOH . E 3 HOH A 120 423 120 HOH HOH . E 3 HOH A 121 424 121 HOH HOH . E 3 HOH A 122 425 122 HOH HOH . E 3 HOH A 123 426 123 HOH HOH . E 3 HOH A 124 427 124 HOH HOH . E 3 HOH A 125 428 125 HOH HOH . E 3 HOH A 126 429 126 HOH HOH . E 3 HOH A 127 430 127 HOH HOH . E 3 HOH A 128 431 128 HOH HOH . E 3 HOH A 129 432 129 HOH HOH . E 3 HOH A 130 433 130 HOH HOH . E 3 HOH A 131 434 131 HOH HOH . E 3 HOH A 132 435 132 HOH HOH . E 3 HOH A 133 436 133 HOH HOH . E 3 HOH A 134 437 134 HOH HOH . E 3 HOH A 135 438 135 HOH HOH . E 3 HOH A 136 439 136 HOH HOH . E 3 HOH A 137 440 137 HOH HOH . E 3 HOH A 138 441 138 HOH HOH . E 3 HOH A 139 442 139 HOH HOH . E 3 HOH A 140 443 140 HOH HOH . E 3 HOH A 141 444 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . D 2 41.275 48.148 19.131 1 50.72 ? C1 MPD 303 A 1 HETATM 2 C C2 MPD . . . D 2 41.752 49.602 19.035 1 51.44 ? C2 MPD 303 A 1 HETATM 3 O O2 MPD . . . D 2 41.566 50.076 17.699 1 50.31 ? O2 MPD 303 A 1 HETATM 4 C CM MPD . . . D 2 40.933 50.456 19.994 1 51.37 ? CM MPD 303 A 1 HETATM 5 C C3 MPD . . . D 2 43.245 49.71 19.439 1 52.19 ? C3 MPD 303 A 1 HETATM 6 C C4 MPD . . . D 2 44.181 48.885 18.526 1 52.99 ? C4 MPD 303 A 1 HETATM 7 O O4 MPD . . . D 2 44.079 49.337 17.173 1 53.76 ? O4 MPD 303 A 1 HETATM 8 C C5 MPD . . . D 2 45.627 49.039 19.001 1 52.5 ? C5 MPD 303 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #