data_2ZD0 # _model_server_result.job_id yhV6XmLPnmJ5GVtGr1Qn4w _model_server_result.datetime_utc '2025-03-06 09:53:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zd0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":100}' # _entry.id 2ZD0 # _exptl.entry_id 2ZD0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.225 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRYPTOPHAN _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ZD0 _cell.length_a 109.676 _cell.length_b 109.676 _cell.length_c 36.756 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZD0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 109.676 0 0 3 'crystal symmetry operation' 3_545 -y+1/2,x-1/2,z 0 -1 0 1 0 0 0 0 1 54.838 -54.838 0 4 'crystal symmetry operation' 4_555 y+1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 54.838 54.838 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C11 H12 N2 O2' _chem_comp.formula_weight 204.225 _chem_comp.id TRP _chem_comp.mon_nstd_flag y _chem_comp.name TRYPTOPHAN _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA TRP sing 276 n n N H TRP sing 277 n n N H2 TRP sing 278 n n CA C TRP sing 279 n n CA CB TRP sing 280 n n CA HA TRP sing 281 n n C O TRP doub 282 n n C OXT TRP sing 283 n n CB CG TRP sing 284 n n CB HB2 TRP sing 285 n n CB HB3 TRP sing 286 n n CG CD1 TRP doub 287 n y CG CD2 TRP sing 288 n y CD1 NE1 TRP sing 289 n y CD1 HD1 TRP sing 290 n n CD2 CE2 TRP doub 291 n y CD2 CE3 TRP sing 292 n y NE1 CE2 TRP sing 293 n y NE1 HE1 TRP sing 294 n n CE2 CZ2 TRP sing 295 n y CE3 CZ3 TRP doub 296 n y CE3 HE3 TRP sing 297 n n CZ2 CH2 TRP doub 298 n y CZ2 HZ2 TRP sing 299 n n CZ3 CH2 TRP sing 300 n y CZ3 HZ3 TRP sing 301 n n CH2 HH2 TRP sing 302 n n OXT HXT TRP sing 303 n n # _atom_sites.entry_id 2ZD0 _atom_sites.fract_transf_matrix[1][1] 0.009118 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009118 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027206 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 TRP A 1 100 100 TRP TRP . E 2 TRP B 1 100 100 TRP TRP . F 2 TRP C 1 100 100 TRP TRP . G 3 HOH A 1 101 4 HOH HOH . G 3 HOH A 2 102 7 HOH HOH . G 3 HOH A 3 103 8 HOH HOH . G 3 HOH A 4 104 14 HOH HOH . G 3 HOH A 5 105 15 HOH HOH . G 3 HOH A 6 106 17 HOH HOH . G 3 HOH A 7 107 19 HOH HOH . G 3 HOH A 8 108 20 HOH HOH . G 3 HOH A 9 109 24 HOH HOH . G 3 HOH A 10 110 27 HOH HOH . G 3 HOH A 11 111 30 HOH HOH . G 3 HOH A 12 112 31 HOH HOH . G 3 HOH A 13 113 36 HOH HOH . G 3 HOH A 14 114 39 HOH HOH . H 3 HOH B 1 101 3 HOH HOH . H 3 HOH B 2 102 6 HOH HOH . H 3 HOH B 3 103 9 HOH HOH . H 3 HOH B 4 104 10 HOH HOH . H 3 HOH B 5 105 11 HOH HOH . H 3 HOH B 6 106 18 HOH HOH . H 3 HOH B 7 107 21 HOH HOH . H 3 HOH B 8 108 25 HOH HOH . H 3 HOH B 9 109 26 HOH HOH . H 3 HOH B 10 110 28 HOH HOH . H 3 HOH B 11 111 29 HOH HOH . H 3 HOH B 12 112 32 HOH HOH . H 3 HOH B 13 113 37 HOH HOH . I 3 HOH C 1 101 1 HOH HOH . I 3 HOH C 2 102 2 HOH HOH . I 3 HOH C 3 103 5 HOH HOH . I 3 HOH C 4 104 12 HOH HOH . I 3 HOH C 5 105 13 HOH HOH . I 3 HOH C 6 106 16 HOH HOH . I 3 HOH C 7 107 22 HOH HOH . I 3 HOH C 8 108 23 HOH HOH . I 3 HOH C 9 109 33 HOH HOH . I 3 HOH C 10 110 34 HOH HOH . I 3 HOH C 11 111 35 HOH HOH . I 3 HOH C 12 112 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N TRP . . . D 2 28.445 12.04 24.01 1 21.19 ? N TRP 100 A 1 HETATM 2 C CA TRP . . . D 2 28.934 11.086 22.985 1 21.88 ? CA TRP 100 A 1 HETATM 3 C C TRP . . . D 2 30.096 10.223 23.49 1 22.68 ? C TRP 100 A 1 HETATM 4 O O TRP . . . D 2 31.088 10.704 24.056 1 23.95 ? O TRP 100 A 1 HETATM 5 C CB TRP . . . D 2 29.295 11.808 21.673 1 21.34 ? CB TRP 100 A 1 HETATM 6 C CG TRP . . . D 2 29.481 10.843 20.513 1 21.46 ? CG TRP 100 A 1 HETATM 7 C CD1 TRP . . . D 2 30.66 10.337 20.062 1 20.65 ? CD1 TRP 100 A 1 HETATM 8 C CD2 TRP . . . D 2 28.451 10.26 19.685 1 20.43 ? CD2 TRP 100 A 1 HETATM 9 N NE1 TRP . . . D 2 30.439 9.485 19.007 1 20.63 ? NE1 TRP 100 A 1 HETATM 10 C CE2 TRP . . . D 2 29.095 9.41 18.759 1 20.05 ? CE2 TRP 100 A 1 HETATM 11 C CE3 TRP . . . D 2 27.053 10.374 19.637 1 20.07 ? CE3 TRP 100 A 1 HETATM 12 C CZ2 TRP . . . D 2 28.395 8.68 17.795 1 20.17 ? CZ2 TRP 100 A 1 HETATM 13 C CZ3 TRP . . . D 2 26.353 9.647 18.668 1 19.46 ? CZ3 TRP 100 A 1 HETATM 14 C CH2 TRP . . . D 2 27.029 8.82 17.76 1 19.72 ? CH2 TRP 100 A 1 HETATM 15 O OXT TRP . . . D 2 30.07 8.997 23.354 1 23.19 ? OXT TRP 100 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #