data_2ZDC # _model_server_result.job_id HTraWqlPSF1NFG5LIyl-2A _model_server_result.datetime_utc '2025-01-25 14:01:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zdc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":6646}' # _entry.id 2ZDC # _exptl.entry_id 2ZDC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 108.56 _cell.angle_beta 108.57 _cell.angle_gamma 108.48 _cell.entry_id 2ZDC _cell.length_a 53.434 _cell.length_b 53.408 _cell.length_c 53.419 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZDC _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 44 A CYS 42 1_555 A SG CYS 86 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 B SG CYS 44 B CYS 42 1_555 B SG CYS 86 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 C SG CYS 44 C CYS 42 1_555 C SG CYS 86 C CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 310 n n C C2 TRS sing 311 n n C C3 TRS sing 312 n n C N TRS sing 313 n n C1 O1 TRS sing 314 n n C1 H11 TRS sing 315 n n C1 H12 TRS sing 316 n n C2 O2 TRS sing 317 n n C2 H21 TRS sing 318 n n C2 H22 TRS sing 319 n n C3 O3 TRS sing 320 n n C3 H31 TRS sing 321 n n C3 H32 TRS sing 322 n n N HN1 TRS sing 323 n n N HN2 TRS sing 324 n n N HN3 TRS sing 325 n n O1 HO1 TRS sing 326 n n O2 HO2 TRS sing 327 n n O3 HO3 TRS sing 328 n n # _atom_sites.entry_id 2ZDC _atom_sites.fract_transf_matrix[1][1] 0.018715 _atom_sites.fract_transf_matrix[1][2] 0.006253 _atom_sites.fract_transf_matrix[1][3] 0.010405 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019741 _atom_sites.fract_transf_matrix[2][3] 0.010407 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022324 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 A 1 6247 6247 SO4 SO4 . E 3 TRS A 1 6646 6646 TRS TRS . F 2 SO4 B 1 6245 6245 SO4 SO4 . G 2 SO4 C 1 6246 6246 SO4 SO4 . H 4 HOH A 1 6647 3 HOH HOH . H 4 HOH A 2 6648 5 HOH HOH . H 4 HOH A 3 6649 7 HOH HOH . H 4 HOH A 4 6650 10 HOH HOH . H 4 HOH A 5 6651 13 HOH HOH . H 4 HOH A 6 6652 19 HOH HOH . H 4 HOH A 7 6653 20 HOH HOH . H 4 HOH A 8 6654 22 HOH HOH . H 4 HOH A 9 6655 24 HOH HOH . H 4 HOH A 10 6656 25 HOH HOH . H 4 HOH A 11 6657 26 HOH HOH . H 4 HOH A 12 6658 27 HOH HOH . H 4 HOH A 13 6659 29 HOH HOH . H 4 HOH A 14 6660 30 HOH HOH . H 4 HOH A 15 6661 31 HOH HOH . H 4 HOH A 16 6662 33 HOH HOH . H 4 HOH A 17 6663 34 HOH HOH . H 4 HOH A 18 6664 35 HOH HOH . H 4 HOH A 19 6665 44 HOH HOH . H 4 HOH A 20 6666 59 HOH HOH . H 4 HOH A 21 6667 63 HOH HOH . H 4 HOH A 22 6668 66 HOH HOH . H 4 HOH A 23 6669 67 HOH HOH . I 4 HOH B 1 6246 1 HOH HOH . I 4 HOH B 2 6247 2 HOH HOH . I 4 HOH B 3 6248 9 HOH HOH . I 4 HOH B 4 6249 11 HOH HOH . I 4 HOH B 5 6250 14 HOH HOH . I 4 HOH B 6 6251 16 HOH HOH . I 4 HOH B 7 6252 21 HOH HOH . I 4 HOH B 8 6253 23 HOH HOH . I 4 HOH B 9 6254 28 HOH HOH . I 4 HOH B 10 6255 45 HOH HOH . I 4 HOH B 11 6256 46 HOH HOH . I 4 HOH B 12 6257 48 HOH HOH . I 4 HOH B 13 6258 50 HOH HOH . I 4 HOH B 14 6259 51 HOH HOH . I 4 HOH B 15 6260 52 HOH HOH . I 4 HOH B 16 6261 53 HOH HOH . I 4 HOH B 17 6262 60 HOH HOH . J 4 HOH C 1 6247 4 HOH HOH . J 4 HOH C 2 6248 6 HOH HOH . J 4 HOH C 3 6249 8 HOH HOH . J 4 HOH C 4 6250 12 HOH HOH . J 4 HOH C 5 6251 15 HOH HOH . J 4 HOH C 6 6252 17 HOH HOH . J 4 HOH C 7 6253 18 HOH HOH . J 4 HOH C 8 6254 36 HOH HOH . J 4 HOH C 9 6255 37 HOH HOH . J 4 HOH C 10 6256 38 HOH HOH . J 4 HOH C 11 6257 39 HOH HOH . J 4 HOH C 12 6258 41 HOH HOH . J 4 HOH C 13 6259 42 HOH HOH . J 4 HOH C 14 6260 43 HOH HOH . J 4 HOH C 15 6261 47 HOH HOH . J 4 HOH C 16 6262 58 HOH HOH . J 4 HOH C 17 6263 61 HOH HOH . J 4 HOH C 18 6264 65 HOH HOH . J 4 HOH C 19 6265 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . E 3 35.445 45.736 20.642 1 56.73 ? C TRS 6646 A 1 HETATM 2 C C1 TRS . . . E 3 34.733 46.714 19.707 1 55.83 ? C1 TRS 6646 A 1 HETATM 3 C C2 TRS . . . E 3 36.687 45.173 19.939 1 56.4 ? C2 TRS 6646 A 1 HETATM 4 C C3 TRS . . . E 3 34.491 44.593 21.004 1 56.15 ? C3 TRS 6646 A 1 HETATM 5 N N TRS . . . E 3 35.859 46.441 21.867 1 54.56 ? N TRS 6646 A 1 HETATM 6 O O1 TRS . . . E 3 35.459 47.945 19.662 1 58.47 ? O1 TRS 6646 A 1 HETATM 7 O O2 TRS . . . E 3 37.46 44.402 20.868 1 56.83 ? O2 TRS 6646 A 1 HETATM 8 O O3 TRS . . . E 3 33.534 45.052 21.967 1 57.77 ? O3 TRS 6646 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #