data_2ZDQ # _model_server_result.job_id X-g8udjaZ4BvM6GEn_dj-Q _model_server_result.datetime_utc '2024-11-24 18:39:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zdq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 2ZDQ # _exptl.entry_id 2ZDQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 89.093 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-ALANINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ZDQ _cell.length_a 95.052 _cell.length_b 95.052 _cell.length_c 192.009 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZDQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C DAL . A DAL 401 1_555 D N DAL . A DAL 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale2 F C DAL . B DAL 403 1_555 G N DAL . B DAL 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.236 ? # _chem_comp.formula 'C3 H7 N O2' _chem_comp.formula_weight 89.093 _chem_comp.id DAL _chem_comp.mon_nstd_flag . _chem_comp.name D-ALANINE _chem_comp.type 'd-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA DAL sing 132 n n N H DAL sing 133 n n N H2 DAL sing 134 n n CA CB DAL sing 135 n n CA C DAL sing 136 n n CA HA DAL sing 137 n n CB HB1 DAL sing 138 n n CB HB2 DAL sing 139 n n CB HB3 DAL sing 140 n n C O DAL doub 141 n n C OXT DAL sing 142 n n OXT HXT DAL sing 143 n n # _atom_sites.entry_id 2ZDQ _atom_sites.fract_transf_matrix[1][1] 0.010521 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010521 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005208 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DAL A 1 401 401 DAL DAL . D 2 DAL A 1 402 402 DAL DAL . E 3 ATP A 1 1501 1501 ATP ATP . F 2 DAL B 1 403 403 DAL DAL . G 2 DAL B 1 404 404 DAL DAL . H 3 ATP B 1 1502 1502 ATP ATP . I 4 HOH A 1 1502 1 HOH TIP . I 4 HOH A 2 1503 2 HOH TIP . I 4 HOH A 3 1504 5 HOH TIP . I 4 HOH A 4 1505 6 HOH TIP . I 4 HOH A 5 1506 8 HOH TIP . I 4 HOH A 6 1507 10 HOH TIP . I 4 HOH A 7 1508 11 HOH TIP . I 4 HOH A 8 1509 12 HOH TIP . I 4 HOH A 9 1510 14 HOH TIP . I 4 HOH A 10 1511 18 HOH TIP . I 4 HOH A 11 1512 20 HOH TIP . I 4 HOH A 12 1513 21 HOH TIP . I 4 HOH A 13 1514 22 HOH TIP . I 4 HOH A 14 1515 23 HOH TIP . I 4 HOH A 15 1516 24 HOH TIP . I 4 HOH A 16 1517 25 HOH TIP . I 4 HOH A 17 1518 26 HOH TIP . I 4 HOH A 18 1519 27 HOH TIP . I 4 HOH A 19 1520 29 HOH TIP . I 4 HOH A 20 1521 31 HOH TIP . I 4 HOH A 21 1522 32 HOH TIP . I 4 HOH A 22 1523 34 HOH TIP . I 4 HOH A 23 1524 35 HOH TIP . I 4 HOH A 24 1525 36 HOH TIP . I 4 HOH A 25 1526 37 HOH TIP . I 4 HOH A 26 1527 39 HOH TIP . I 4 HOH A 27 1528 41 HOH TIP . I 4 HOH A 28 1529 43 HOH TIP . I 4 HOH A 29 1530 44 HOH TIP . I 4 HOH A 30 1531 46 HOH TIP . I 4 HOH A 31 1532 47 HOH TIP . I 4 HOH A 32 1533 48 HOH TIP . I 4 HOH A 33 1534 49 HOH TIP . I 4 HOH A 34 1535 50 HOH TIP . I 4 HOH A 35 1536 55 HOH TIP . I 4 HOH A 36 1537 56 HOH TIP . I 4 HOH A 37 1538 57 HOH TIP . I 4 HOH A 38 1539 60 HOH TIP . I 4 HOH A 39 1540 61 HOH TIP . I 4 HOH A 40 1541 62 HOH TIP . I 4 HOH A 41 1542 63 HOH TIP . I 4 HOH A 42 1543 64 HOH TIP . I 4 HOH A 43 1544 67 HOH TIP . I 4 HOH A 44 1545 68 HOH TIP . I 4 HOH A 45 1546 69 HOH TIP . I 4 HOH A 46 1547 70 HOH TIP . I 4 HOH A 47 1548 71 HOH TIP . I 4 HOH A 48 1549 72 HOH TIP . I 4 HOH A 49 1550 73 HOH TIP . I 4 HOH A 50 1551 74 HOH TIP . I 4 HOH A 51 1552 75 HOH TIP . I 4 HOH A 52 1553 76 HOH TIP . I 4 HOH A 53 1554 77 HOH TIP . I 4 HOH A 54 1555 79 HOH TIP . I 4 HOH A 55 1556 80 HOH TIP . I 4 HOH A 56 1557 82 HOH TIP . I 4 HOH A 57 1558 83 HOH TIP . I 4 HOH A 58 1559 85 HOH TIP . I 4 HOH A 59 1560 86 HOH TIP . I 4 HOH A 60 1561 88 HOH TIP . I 4 HOH A 61 1562 90 HOH TIP . I 4 HOH A 62 1563 92 HOH TIP . I 4 HOH A 63 1564 93 HOH TIP . I 4 HOH A 64 1565 94 HOH TIP . I 4 HOH A 65 1566 95 HOH TIP . I 4 HOH A 66 1567 96 HOH TIP . I 4 HOH A 67 1568 97 HOH TIP . I 4 HOH A 68 1569 99 HOH TIP . I 4 HOH A 69 1570 100 HOH TIP . I 4 HOH A 70 1571 101 HOH TIP . I 4 HOH A 71 1572 102 HOH TIP . I 4 HOH A 72 1573 103 HOH TIP . I 4 HOH A 73 1574 104 HOH TIP . I 4 HOH A 74 1575 105 HOH TIP . I 4 HOH A 75 1576 106 HOH TIP . I 4 HOH A 76 1577 107 HOH TIP . I 4 HOH A 77 1578 108 HOH TIP . I 4 HOH A 78 1579 130 HOH TIP . I 4 HOH A 79 1580 131 HOH TIP . I 4 HOH A 80 1581 133 HOH TIP . I 4 HOH A 81 1582 134 HOH TIP . I 4 HOH A 82 1583 136 HOH TIP . I 4 HOH A 83 1584 138 HOH TIP . I 4 HOH A 84 1585 139 HOH TIP . I 4 HOH A 85 1586 140 HOH TIP . I 4 HOH A 86 1587 141 HOH TIP . I 4 HOH A 87 1588 142 HOH TIP . I 4 HOH A 88 1589 143 HOH TIP . I 4 HOH A 89 1590 144 HOH TIP . I 4 HOH A 90 1591 145 HOH TIP . I 4 HOH A 91 1592 147 HOH TIP . I 4 HOH A 92 1593 148 HOH TIP . I 4 HOH A 93 1594 150 HOH TIP . I 4 HOH A 94 1595 152 HOH TIP . I 4 HOH A 95 1596 154 HOH TIP . I 4 HOH A 96 1597 155 HOH TIP . I 4 HOH A 97 1598 156 HOH TIP . I 4 HOH A 98 1599 157 HOH TIP . I 4 HOH A 99 1600 159 HOH TIP . I 4 HOH A 100 1601 160 HOH TIP . I 4 HOH A 101 1602 161 HOH TIP . I 4 HOH A 102 1603 162 HOH TIP . I 4 HOH A 103 1604 164 HOH TIP . I 4 HOH A 104 1605 165 HOH TIP . I 4 HOH A 105 1606 166 HOH TIP . I 4 HOH A 106 1607 167 HOH TIP . I 4 HOH A 107 1608 168 HOH TIP . I 4 HOH A 108 1609 169 HOH TIP . I 4 HOH A 109 1610 170 HOH TIP . I 4 HOH A 110 1611 171 HOH TIP . I 4 HOH A 111 1612 172 HOH TIP . I 4 HOH A 112 1613 173 HOH TIP . I 4 HOH A 113 1614 174 HOH TIP . I 4 HOH A 114 1615 175 HOH TIP . I 4 HOH A 115 1616 176 HOH TIP . I 4 HOH A 116 1617 177 HOH TIP . I 4 HOH A 117 1618 179 HOH TIP . I 4 HOH A 118 1619 180 HOH TIP . I 4 HOH A 119 1620 181 HOH TIP . I 4 HOH A 120 1621 187 HOH TIP . I 4 HOH A 121 1622 189 HOH TIP . I 4 HOH A 122 1623 190 HOH TIP . I 4 HOH A 123 1624 191 HOH TIP . I 4 HOH A 124 1625 192 HOH TIP . I 4 HOH A 125 1626 193 HOH TIP . I 4 HOH A 126 1627 194 HOH TIP . J 4 HOH B 1 1503 3 HOH TIP . J 4 HOH B 2 1504 4 HOH TIP . J 4 HOH B 3 1505 7 HOH TIP . J 4 HOH B 4 1506 9 HOH TIP . J 4 HOH B 5 1507 13 HOH TIP . J 4 HOH B 6 1508 15 HOH TIP . J 4 HOH B 7 1509 16 HOH TIP . J 4 HOH B 8 1510 17 HOH TIP . J 4 HOH B 9 1511 19 HOH TIP . J 4 HOH B 10 1512 28 HOH TIP . J 4 HOH B 11 1513 30 HOH TIP . J 4 HOH B 12 1514 33 HOH TIP . J 4 HOH B 13 1515 38 HOH TIP . J 4 HOH B 14 1516 40 HOH TIP . J 4 HOH B 15 1517 42 HOH TIP . J 4 HOH B 16 1518 45 HOH TIP . J 4 HOH B 17 1519 51 HOH TIP . J 4 HOH B 18 1520 52 HOH TIP . J 4 HOH B 19 1521 53 HOH TIP . J 4 HOH B 20 1522 54 HOH TIP . J 4 HOH B 21 1523 58 HOH TIP . J 4 HOH B 22 1524 59 HOH TIP . J 4 HOH B 23 1525 65 HOH TIP . J 4 HOH B 24 1526 66 HOH TIP . J 4 HOH B 25 1527 78 HOH TIP . J 4 HOH B 26 1528 81 HOH TIP . J 4 HOH B 27 1529 84 HOH TIP . J 4 HOH B 28 1530 87 HOH TIP . J 4 HOH B 29 1531 89 HOH TIP . J 4 HOH B 30 1532 91 HOH TIP . J 4 HOH B 31 1533 98 HOH TIP . J 4 HOH B 32 1534 109 HOH TIP . J 4 HOH B 33 1535 110 HOH TIP . J 4 HOH B 34 1536 111 HOH TIP . J 4 HOH B 35 1537 112 HOH TIP . J 4 HOH B 36 1538 113 HOH TIP . J 4 HOH B 37 1539 114 HOH TIP . J 4 HOH B 38 1540 115 HOH TIP . J 4 HOH B 39 1541 116 HOH TIP . J 4 HOH B 40 1542 117 HOH TIP . J 4 HOH B 41 1543 118 HOH TIP . J 4 HOH B 42 1544 119 HOH TIP . J 4 HOH B 43 1545 120 HOH TIP . J 4 HOH B 44 1546 121 HOH TIP . J 4 HOH B 45 1547 122 HOH TIP . J 4 HOH B 46 1548 123 HOH TIP . J 4 HOH B 47 1549 124 HOH TIP . J 4 HOH B 48 1550 125 HOH TIP . J 4 HOH B 49 1551 126 HOH TIP . J 4 HOH B 50 1552 127 HOH TIP . J 4 HOH B 51 1553 128 HOH TIP . J 4 HOH B 52 1554 129 HOH TIP . J 4 HOH B 53 1555 132 HOH TIP . J 4 HOH B 54 1556 135 HOH TIP . J 4 HOH B 55 1557 137 HOH TIP . J 4 HOH B 56 1558 146 HOH TIP . J 4 HOH B 57 1559 149 HOH TIP . J 4 HOH B 58 1560 151 HOH TIP . J 4 HOH B 59 1561 153 HOH TIP . J 4 HOH B 60 1562 158 HOH TIP . J 4 HOH B 61 1563 163 HOH TIP . J 4 HOH B 62 1564 178 HOH TIP . J 4 HOH B 63 1565 182 HOH TIP . J 4 HOH B 64 1566 183 HOH TIP . J 4 HOH B 65 1567 184 HOH TIP . J 4 HOH B 66 1568 185 HOH TIP . J 4 HOH B 67 1569 186 HOH TIP . J 4 HOH B 68 1570 188 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N DAL . . . D 2 47.642 18.868 -2.509 1 28.84 ? N DAL 402 A 1 HETATM 2 C CA DAL . . . D 2 49.006 18.478 -2.135 1 32.44 ? CA DAL 402 A 1 HETATM 3 C CB DAL . . . D 2 49.571 19.473 -1.12 1 29.85 ? CB DAL 402 A 1 HETATM 4 C C DAL . . . D 2 49.883 18.454 -3.362 1 33.8 ? C DAL 402 A 1 HETATM 5 O O DAL . . . D 2 49.448 19.018 -4.386 1 32.44 ? O DAL 402 A 1 HETATM 6 O OXT DAL . . . D 2 50.964 17.898 -3.333 1 37.3 ? OXT DAL 402 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #