data_2ZDT # _model_server_result.job_id yVdDNGSA0x_Q2j1N9XD7wA _model_server_result.datetime_utc '2024-11-22 08:41:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zdt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":902}' # _entry.id 2ZDT # _exptl.entry_id 2ZDT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ZDT _cell.length_a 50.331 _cell.length_b 71.687 _cell.length_c 108.103 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZDT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 184 n n C1 C2 GOL sing 185 n n C1 H11 GOL sing 186 n n C1 H12 GOL sing 187 n n O1 HO1 GOL sing 188 n n C2 O2 GOL sing 189 n n C2 C3 GOL sing 190 n n C2 H2 GOL sing 191 n n O2 HO2 GOL sing 192 n n C3 O3 GOL sing 193 n n C3 H31 GOL sing 194 n n C3 H32 GOL sing 195 n n O3 HO3 GOL sing 196 n n # _atom_sites.entry_id 2ZDT _atom_sites.fract_transf_matrix[1][1] 0.019868 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013949 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00925 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 46C A 1 901 901 46C LIG . C 3 GOL A 1 902 902 GOL GOL . D 4 HOH A 1 903 1 HOH HOH . D 4 HOH A 2 904 2 HOH HOH . D 4 HOH A 3 905 3 HOH HOH . D 4 HOH A 4 906 4 HOH HOH . D 4 HOH A 5 907 5 HOH HOH . D 4 HOH A 6 908 6 HOH HOH . D 4 HOH A 7 909 7 HOH HOH . D 4 HOH A 8 910 8 HOH HOH . D 4 HOH A 9 911 9 HOH HOH . D 4 HOH A 10 912 10 HOH HOH . D 4 HOH A 11 913 11 HOH HOH . D 4 HOH A 12 914 12 HOH HOH . D 4 HOH A 13 915 13 HOH HOH . D 4 HOH A 14 916 14 HOH HOH . D 4 HOH A 15 917 15 HOH HOH . D 4 HOH A 16 918 16 HOH HOH . D 4 HOH A 17 919 17 HOH HOH . D 4 HOH A 18 920 18 HOH HOH . D 4 HOH A 19 921 19 HOH HOH . D 4 HOH A 20 922 20 HOH HOH . D 4 HOH A 21 923 21 HOH HOH . D 4 HOH A 22 924 22 HOH HOH . D 4 HOH A 23 925 23 HOH HOH . D 4 HOH A 24 926 24 HOH HOH . D 4 HOH A 25 927 25 HOH HOH . D 4 HOH A 26 928 26 HOH HOH . D 4 HOH A 27 929 27 HOH HOH . D 4 HOH A 28 930 28 HOH HOH . D 4 HOH A 29 931 29 HOH HOH . D 4 HOH A 30 932 30 HOH HOH . D 4 HOH A 31 933 31 HOH HOH . D 4 HOH A 32 934 32 HOH HOH . D 4 HOH A 33 935 33 HOH HOH . D 4 HOH A 34 936 34 HOH HOH . D 4 HOH A 35 937 35 HOH HOH . D 4 HOH A 36 938 36 HOH HOH . D 4 HOH A 37 939 37 HOH HOH . D 4 HOH A 38 940 38 HOH HOH . D 4 HOH A 39 941 39 HOH HOH . D 4 HOH A 40 942 40 HOH HOH . D 4 HOH A 41 943 41 HOH HOH . D 4 HOH A 42 944 42 HOH HOH . D 4 HOH A 43 945 43 HOH HOH . D 4 HOH A 44 946 44 HOH HOH . D 4 HOH A 45 947 45 HOH HOH . D 4 HOH A 46 948 46 HOH HOH . D 4 HOH A 47 949 47 HOH HOH . D 4 HOH A 48 950 48 HOH HOH . D 4 HOH A 49 951 49 HOH HOH . D 4 HOH A 50 952 50 HOH HOH . D 4 HOH A 51 953 51 HOH HOH . D 4 HOH A 52 954 52 HOH HOH . D 4 HOH A 53 955 53 HOH HOH . D 4 HOH A 54 956 54 HOH HOH . D 4 HOH A 55 957 55 HOH HOH . D 4 HOH A 56 958 56 HOH HOH . D 4 HOH A 57 959 57 HOH HOH . D 4 HOH A 58 960 58 HOH HOH . D 4 HOH A 59 961 59 HOH HOH . D 4 HOH A 60 962 60 HOH HOH . D 4 HOH A 61 963 61 HOH HOH . D 4 HOH A 62 964 62 HOH HOH . D 4 HOH A 63 965 63 HOH HOH . D 4 HOH A 64 966 64 HOH HOH . D 4 HOH A 65 967 65 HOH HOH . D 4 HOH A 66 968 66 HOH HOH . D 4 HOH A 67 969 67 HOH HOH . D 4 HOH A 68 970 68 HOH HOH . D 4 HOH A 69 971 69 HOH HOH . D 4 HOH A 70 972 70 HOH HOH . D 4 HOH A 71 973 71 HOH HOH . D 4 HOH A 72 974 72 HOH HOH . D 4 HOH A 73 975 73 HOH HOH . D 4 HOH A 74 976 74 HOH HOH . D 4 HOH A 75 977 75 HOH HOH . D 4 HOH A 76 978 76 HOH HOH . D 4 HOH A 77 979 77 HOH HOH . D 4 HOH A 78 980 78 HOH HOH . D 4 HOH A 79 981 79 HOH HOH . D 4 HOH A 80 982 80 HOH HOH . D 4 HOH A 81 983 81 HOH HOH . D 4 HOH A 82 984 82 HOH HOH . D 4 HOH A 83 985 83 HOH HOH . D 4 HOH A 84 986 84 HOH HOH . D 4 HOH A 85 987 85 HOH HOH . D 4 HOH A 86 988 86 HOH HOH . D 4 HOH A 87 989 87 HOH HOH . D 4 HOH A 88 990 88 HOH HOH . D 4 HOH A 89 991 89 HOH HOH . D 4 HOH A 90 992 90 HOH HOH . D 4 HOH A 91 993 91 HOH HOH . D 4 HOH A 92 994 92 HOH HOH . D 4 HOH A 93 995 93 HOH HOH . D 4 HOH A 94 996 94 HOH HOH . D 4 HOH A 95 997 95 HOH HOH . D 4 HOH A 96 998 96 HOH HOH . D 4 HOH A 97 999 97 HOH HOH . D 4 HOH A 98 1000 98 HOH HOH . D 4 HOH A 99 1001 99 HOH HOH . D 4 HOH A 100 1002 100 HOH HOH . D 4 HOH A 101 1003 101 HOH HOH . D 4 HOH A 102 1004 102 HOH HOH . D 4 HOH A 103 1005 103 HOH HOH . D 4 HOH A 104 1006 104 HOH HOH . D 4 HOH A 105 1007 105 HOH HOH . D 4 HOH A 106 1008 106 HOH HOH . D 4 HOH A 107 1009 107 HOH HOH . D 4 HOH A 108 1010 108 HOH HOH . D 4 HOH A 109 1011 109 HOH HOH . D 4 HOH A 110 1012 110 HOH HOH . D 4 HOH A 111 1013 111 HOH HOH . D 4 HOH A 112 1014 112 HOH HOH . D 4 HOH A 113 1015 113 HOH HOH . D 4 HOH A 114 1016 114 HOH HOH . D 4 HOH A 115 1017 115 HOH HOH . D 4 HOH A 116 1018 116 HOH HOH . D 4 HOH A 117 1019 117 HOH HOH . D 4 HOH A 118 1020 118 HOH HOH . D 4 HOH A 119 1021 119 HOH HOH . D 4 HOH A 120 1022 120 HOH HOH . D 4 HOH A 121 1023 121 HOH HOH . D 4 HOH A 122 1024 122 HOH HOH . D 4 HOH A 123 1025 123 HOH HOH . D 4 HOH A 124 1026 124 HOH HOH . D 4 HOH A 125 1027 125 HOH HOH . D 4 HOH A 126 1028 126 HOH HOH . D 4 HOH A 127 1029 127 HOH HOH . D 4 HOH A 128 1030 128 HOH HOH . D 4 HOH A 129 1031 129 HOH HOH . D 4 HOH A 130 1032 130 HOH HOH . D 4 HOH A 131 1033 131 HOH HOH . D 4 HOH A 132 1034 132 HOH HOH . D 4 HOH A 133 1035 133 HOH HOH . D 4 HOH A 134 1036 134 HOH HOH . D 4 HOH A 135 1037 135 HOH HOH . D 4 HOH A 136 1038 136 HOH HOH . D 4 HOH A 137 1039 137 HOH HOH . D 4 HOH A 138 1040 138 HOH HOH . D 4 HOH A 139 1041 139 HOH HOH . D 4 HOH A 140 1042 140 HOH HOH . D 4 HOH A 141 1043 141 HOH HOH . D 4 HOH A 142 1044 142 HOH HOH . D 4 HOH A 143 1045 143 HOH HOH . D 4 HOH A 144 1046 144 HOH HOH . D 4 HOH A 145 1047 145 HOH HOH . D 4 HOH A 146 1048 146 HOH HOH . D 4 HOH A 147 1049 147 HOH HOH . D 4 HOH A 148 1050 148 HOH HOH . D 4 HOH A 149 1051 149 HOH HOH . D 4 HOH A 150 1052 150 HOH HOH . D 4 HOH A 151 1053 151 HOH HOH . D 4 HOH A 152 1054 152 HOH HOH . D 4 HOH A 153 1055 153 HOH HOH . D 4 HOH A 154 1056 154 HOH HOH . D 4 HOH A 155 1057 155 HOH HOH . D 4 HOH A 156 1058 156 HOH HOH . D 4 HOH A 157 1059 157 HOH HOH . D 4 HOH A 158 1060 158 HOH HOH . D 4 HOH A 159 1061 159 HOH HOH . D 4 HOH A 160 1062 160 HOH HOH . D 4 HOH A 161 1063 161 HOH HOH . D 4 HOH A 162 1064 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 49.035 18.821 25.241 1 48.99 ? C1 GOL 902 A 1 HETATM 2 O O1 GOL . . . C 3 48.972 19.65 24.21 1 49.13 ? O1 GOL 902 A 1 HETATM 3 C C2 GOL . . . C 3 48.378 19.421 26.484 1 46.82 ? C2 GOL 902 A 1 HETATM 4 O O2 GOL . . . C 3 47.149 19.844 26.192 1 47.5 ? O2 GOL 902 A 1 HETATM 5 C C3 GOL . . . C 3 48.318 18.366 27.592 1 49.83 ? C3 GOL 902 A 1 HETATM 6 O O3 GOL . . . C 3 48.356 18.917 28.796 1 50.14 ? O3 GOL 902 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #