data_2ZDY
#
_model_server_result.job_id            HyIMuvfcGsX-SSTLAAQNmA 
_model_server_result.datetime_utc      '2024-11-14 17:15:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2zdy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":600}' 
#
_entry.id    2ZDY 
#
_exptl.entry_id    2ZDY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              238.305 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.66 
_cell.angle_gamma         90 
_cell.entry_id            2ZDY 
_cell.length_a            70.713 
_cell.length_b            69.09 
_cell.length_c            81.492 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZDY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 241 A ASN 258 1_555 C MG MG . A MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc2 C MG MG . A MG 500 1_555 D O2B ADP . A ADP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? 
metalc ? metalc3 C MG MG . A MG 500 1_555 D O1A ADP . A ADP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? 
metalc ? metalc4 C MG MG . A MG 500 1_555 H O HOH . A HOH 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? 
metalc ? metalc5 B OD1 ASN 241 B ASN 258 1_555 F MG MG . B MG 1500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? 
metalc ? metalc6 F MG MG . B MG 1500 1_555 G O3B ADP . B ADP 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? 
metalc ? metalc7 F MG MG . B MG 1500 1_555 G O1A ADP . B ADP 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? 
#
_chem_comp.formula           'C8 H18 N2 O4 S' 
_chem_comp.formula_weight    238.305 
_chem_comp.id                EPE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEPES 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 EPE sing 127 n n 
N1 C6 EPE sing 128 n n 
N1 C9 EPE sing 129 n n 
C2 C3 EPE sing 130 n n 
C2 H21 EPE sing 131 n n 
C2 H22 EPE sing 132 n n 
C3 N4 EPE sing 133 n n 
C3 H31 EPE sing 134 n n 
C3 H32 EPE sing 135 n n 
N4 C5 EPE sing 136 n n 
N4 C7 EPE sing 137 n n 
C5 C6 EPE sing 138 n n 
C5 H51 EPE sing 139 n n 
C5 H52 EPE sing 140 n n 
C6 H61 EPE sing 141 n n 
C6 H62 EPE sing 142 n n 
C7 C8 EPE sing 143 n n 
C7 H71 EPE sing 144 n n 
C7 H72 EPE sing 145 n n 
C8 O8 EPE sing 146 n n 
C8 H81 EPE sing 147 n n 
C8 H82 EPE sing 148 n n 
O8 HO8 EPE sing 149 n n 
C9 C10 EPE sing 150 n n 
C9 H91 EPE sing 151 n n 
C9 H92 EPE sing 152 n n 
C10 S EPE sing 153 n n 
C10 H101 EPE sing 154 n n 
C10 H102 EPE sing 155 n n 
S O1S EPE doub 156 n n 
S O2S EPE doub 157 n n 
S O3S EPE sing 158 n n 
O3S HOS3 EPE sing 159 n n 
#
_atom_sites.entry_id                     2ZDY 
_atom_sites.fract_transf_matrix[1][1]    0.014142 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002408 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014474 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012448 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 500 500 MG MG . 
D 3 ADP A 1 501 501 ADP ADP . 
E 4 EPE A 1 600 600 EPE EPE . 
F 2 MG B 1 1500 1500 MG MG . 
G 3 ADP B 1 1501 1501 ADP ADP . 
H 5 HOH A 1 601 2 HOH HOH . 
H 5 HOH A 2 602 4 HOH HOH . 
H 5 HOH A 3 603 6 HOH HOH . 
H 5 HOH A 4 604 7 HOH HOH . 
H 5 HOH A 5 605 8 HOH HOH . 
H 5 HOH A 6 606 11 HOH HOH . 
H 5 HOH A 7 607 12 HOH HOH . 
H 5 HOH A 8 608 14 HOH HOH . 
H 5 HOH A 9 609 15 HOH HOH . 
H 5 HOH A 10 610 17 HOH HOH . 
H 5 HOH A 11 611 19 HOH HOH . 
H 5 HOH A 12 612 21 HOH HOH . 
H 5 HOH A 13 613 24 HOH HOH . 
H 5 HOH A 14 614 25 HOH HOH . 
H 5 HOH A 15 615 27 HOH HOH . 
H 5 HOH A 16 616 28 HOH HOH . 
H 5 HOH A 17 617 31 HOH HOH . 
H 5 HOH A 18 618 34 HOH HOH . 
H 5 HOH A 19 619 35 HOH HOH . 
H 5 HOH A 20 620 36 HOH HOH . 
H 5 HOH A 21 621 37 HOH HOH . 
H 5 HOH A 22 622 39 HOH HOH . 
H 5 HOH A 23 623 42 HOH HOH . 
H 5 HOH A 24 624 43 HOH HOH . 
H 5 HOH A 25 625 46 HOH HOH . 
H 5 HOH A 26 626 47 HOH HOH . 
H 5 HOH A 27 627 48 HOH HOH . 
H 5 HOH A 28 628 51 HOH HOH . 
H 5 HOH A 29 629 54 HOH HOH . 
H 5 HOH A 30 630 55 HOH HOH . 
H 5 HOH A 31 631 56 HOH HOH . 
H 5 HOH A 32 632 59 HOH HOH . 
H 5 HOH A 33 633 60 HOH HOH . 
H 5 HOH A 34 634 61 HOH HOH . 
H 5 HOH A 35 635 62 HOH HOH . 
H 5 HOH A 36 636 65 HOH HOH . 
H 5 HOH A 37 637 66 HOH HOH . 
H 5 HOH A 38 638 69 HOH HOH . 
H 5 HOH A 39 639 70 HOH HOH . 
H 5 HOH A 40 640 71 HOH HOH . 
H 5 HOH A 41 641 72 HOH HOH . 
H 5 HOH A 42 642 73 HOH HOH . 
H 5 HOH A 43 643 78 HOH HOH . 
H 5 HOH A 44 644 80 HOH HOH . 
H 5 HOH A 45 645 81 HOH HOH . 
H 5 HOH A 46 646 82 HOH HOH . 
H 5 HOH A 47 647 84 HOH HOH . 
H 5 HOH A 48 648 85 HOH HOH . 
H 5 HOH A 49 649 86 HOH HOH . 
H 5 HOH A 50 650 87 HOH HOH . 
H 5 HOH A 51 651 89 HOH HOH . 
H 5 HOH A 52 652 90 HOH HOH . 
H 5 HOH A 53 653 91 HOH HOH . 
H 5 HOH A 54 654 93 HOH HOH . 
H 5 HOH A 55 655 94 HOH HOH . 
H 5 HOH A 56 656 97 HOH HOH . 
H 5 HOH A 57 657 99 HOH HOH . 
H 5 HOH A 58 658 101 HOH HOH . 
H 5 HOH A 59 659 102 HOH HOH . 
H 5 HOH A 60 660 103 HOH HOH . 
H 5 HOH A 61 661 104 HOH HOH . 
H 5 HOH A 62 662 105 HOH HOH . 
H 5 HOH A 63 663 106 HOH HOH . 
H 5 HOH A 64 664 107 HOH HOH . 
H 5 HOH A 65 665 108 HOH HOH . 
H 5 HOH A 66 666 109 HOH HOH . 
H 5 HOH A 67 667 110 HOH HOH . 
H 5 HOH A 68 668 111 HOH HOH . 
H 5 HOH A 69 669 112 HOH HOH . 
H 5 HOH A 70 670 115 HOH HOH . 
H 5 HOH A 71 671 117 HOH HOH . 
H 5 HOH A 72 672 118 HOH HOH . 
H 5 HOH A 73 673 119 HOH HOH . 
H 5 HOH A 74 674 123 HOH HOH . 
H 5 HOH A 75 675 124 HOH HOH . 
H 5 HOH A 76 676 125 HOH HOH . 
H 5 HOH A 77 677 126 HOH HOH . 
H 5 HOH A 78 678 128 HOH HOH . 
H 5 HOH A 79 679 129 HOH HOH . 
H 5 HOH A 80 680 130 HOH HOH . 
H 5 HOH A 81 681 132 HOH HOH . 
H 5 HOH A 82 682 134 HOH HOH . 
H 5 HOH A 83 683 136 HOH HOH . 
H 5 HOH A 84 684 139 HOH HOH . 
H 5 HOH A 85 685 141 HOH HOH . 
H 5 HOH A 86 686 142 HOH HOH . 
H 5 HOH A 87 687 146 HOH HOH . 
H 5 HOH A 88 688 147 HOH HOH . 
H 5 HOH A 89 689 149 HOH HOH . 
H 5 HOH A 90 690 152 HOH HOH . 
H 5 HOH A 91 691 153 HOH HOH . 
H 5 HOH A 92 692 155 HOH HOH . 
H 5 HOH A 93 693 157 HOH HOH . 
H 5 HOH A 94 694 159 HOH HOH . 
H 5 HOH A 95 695 160 HOH HOH . 
H 5 HOH A 96 696 165 HOH HOH . 
H 5 HOH A 97 697 167 HOH HOH . 
H 5 HOH A 98 698 170 HOH HOH . 
H 5 HOH A 99 699 174 HOH HOH . 
H 5 HOH A 100 700 175 HOH HOH . 
H 5 HOH A 101 701 178 HOH HOH . 
I 5 HOH B 1 1502 1 HOH HOH . 
I 5 HOH B 2 1503 3 HOH HOH . 
I 5 HOH B 3 1504 5 HOH HOH . 
I 5 HOH B 4 1505 9 HOH HOH . 
I 5 HOH B 5 1506 10 HOH HOH . 
I 5 HOH B 6 1507 13 HOH HOH . 
I 5 HOH B 7 1508 16 HOH HOH . 
I 5 HOH B 8 1509 18 HOH HOH . 
I 5 HOH B 9 1510 20 HOH HOH . 
I 5 HOH B 10 1511 22 HOH HOH . 
I 5 HOH B 11 1512 23 HOH HOH . 
I 5 HOH B 12 1513 26 HOH HOH . 
I 5 HOH B 13 1514 29 HOH HOH . 
I 5 HOH B 14 1515 30 HOH HOH . 
I 5 HOH B 15 1516 32 HOH HOH . 
I 5 HOH B 16 1517 33 HOH HOH . 
I 5 HOH B 17 1518 38 HOH HOH . 
I 5 HOH B 18 1519 40 HOH HOH . 
I 5 HOH B 19 1520 41 HOH HOH . 
I 5 HOH B 20 1521 44 HOH HOH . 
I 5 HOH B 21 1522 45 HOH HOH . 
I 5 HOH B 22 1523 49 HOH HOH . 
I 5 HOH B 23 1524 50 HOH HOH . 
I 5 HOH B 24 1525 52 HOH HOH . 
I 5 HOH B 25 1526 53 HOH HOH . 
I 5 HOH B 26 1527 57 HOH HOH . 
I 5 HOH B 27 1528 58 HOH HOH . 
I 5 HOH B 28 1529 63 HOH HOH . 
I 5 HOH B 29 1530 64 HOH HOH . 
I 5 HOH B 30 1531 67 HOH HOH . 
I 5 HOH B 31 1532 68 HOH HOH . 
I 5 HOH B 32 1533 74 HOH HOH . 
I 5 HOH B 33 1534 75 HOH HOH . 
I 5 HOH B 34 1535 76 HOH HOH . 
I 5 HOH B 35 1536 77 HOH HOH . 
I 5 HOH B 36 1537 79 HOH HOH . 
I 5 HOH B 37 1538 83 HOH HOH . 
I 5 HOH B 38 1539 88 HOH HOH . 
I 5 HOH B 39 1540 92 HOH HOH . 
I 5 HOH B 40 1541 95 HOH HOH . 
I 5 HOH B 41 1542 96 HOH HOH . 
I 5 HOH B 42 1543 98 HOH HOH . 
I 5 HOH B 43 1544 100 HOH HOH . 
I 5 HOH B 44 1545 113 HOH HOH . 
I 5 HOH B 45 1546 114 HOH HOH . 
I 5 HOH B 46 1547 116 HOH HOH . 
I 5 HOH B 47 1548 120 HOH HOH . 
I 5 HOH B 48 1549 121 HOH HOH . 
I 5 HOH B 49 1550 122 HOH HOH . 
I 5 HOH B 50 1551 127 HOH HOH . 
I 5 HOH B 51 1552 131 HOH HOH . 
I 5 HOH B 52 1553 133 HOH HOH . 
I 5 HOH B 53 1554 135 HOH HOH . 
I 5 HOH B 54 1555 137 HOH HOH . 
I 5 HOH B 55 1556 138 HOH HOH . 
I 5 HOH B 56 1557 140 HOH HOH . 
I 5 HOH B 57 1558 143 HOH HOH . 
I 5 HOH B 58 1559 144 HOH HOH . 
I 5 HOH B 59 1560 145 HOH HOH . 
I 5 HOH B 60 1561 148 HOH HOH . 
I 5 HOH B 61 1562 150 HOH HOH . 
I 5 HOH B 62 1563 151 HOH HOH . 
I 5 HOH B 63 1564 154 HOH HOH . 
I 5 HOH B 64 1565 156 HOH HOH . 
I 5 HOH B 65 1566 158 HOH HOH . 
I 5 HOH B 66 1567 161 HOH HOH . 
I 5 HOH B 67 1568 162 HOH HOH . 
I 5 HOH B 68 1569 163 HOH HOH . 
I 5 HOH B 69 1570 164 HOH HOH . 
I 5 HOH B 70 1571 166 HOH HOH . 
I 5 HOH B 71 1572 168 HOH HOH . 
I 5 HOH B 72 1573 169 HOH HOH . 
I 5 HOH B 73 1574 171 HOH HOH . 
I 5 HOH B 74 1575 172 HOH HOH . 
I 5 HOH B 75 1576 173 HOH HOH . 
I 5 HOH B 76 1577 176 HOH HOH . 
I 5 HOH B 77 1578 177 HOH HOH . 
I 5 HOH B 78 1579 179 HOH HOH . 
I 5 HOH B 79 1580 180 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 EPE . . . E 4 -28.245 -6.463 23.332 1 69.19 ? N1 EPE 600 A 1 
HETATM 2 C C2 EPE . . . E 4 -29.422 -7.301 22.962 1 70.83 ? C2 EPE 600 A 1 
HETATM 3 C C3 EPE . . . E 4 -29.845 -8.192 24.136 1 70.51 ? C3 EPE 600 A 1 
HETATM 4 N N4 EPE . . . E 4 -30.18 -7.326 25.292 1 69.32 ? N4 EPE 600 A 1 
HETATM 5 C C5 EPE . . . E 4 -28.95 -6.584 25.693 1 68.13 ? C5 EPE 600 A 1 
HETATM 6 C C6 EPE . . . E 4 -28.537 -5.654 24.54 1 67.71 ? C6 EPE 600 A 1 
HETATM 7 C C7 EPE . . . E 4 -30.594 -8.199 26.392 1 71.32 ? C7 EPE 600 A 1 
HETATM 8 C C8 EPE . . . E 4 -32.121 -8.126 26.555 1 71.47 ? C8 EPE 600 A 1 
HETATM 9 O O8 EPE . . . E 4 -32.564 -6.773 26.39 1 71.83 ? O8 EPE 600 A 1 
HETATM 10 C C9 EPE . . . E 4 -27.875 -5.576 22.166 1 69.88 ? C9 EPE 600 A 1 
HETATM 11 C C10 EPE . . . E 4 -28.81 -4.45 21.947 1 72.66 ? C10 EPE 600 A 1 
HETATM 12 S S EPE . . . E 4 -30.196 -4.874 20.818 1 75.29 ? S EPE 600 A 1 
HETATM 13 O O1S EPE . . . E 4 -30.141 -6.206 20.333 1 76.58 ? O1S EPE 600 A 1 
HETATM 14 O O2S EPE . . . E 4 -31.429 -4.45 21.433 1 74.79 ? O2S EPE 600 A 1 
HETATM 15 O O3S EPE . . . E 4 -30.038 -3.994 19.588 1 76.34 ? O3S EPE 600 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           15 
#