data_2ZFB
#
_model_server_result.job_id            g3EB2gHuXW4jeUFb6kmArw 
_model_server_result.datetime_utc      '2024-10-19 21:35:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2zfb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":150}' 
#
_entry.id    2ZFB 
#
_exptl.entry_id    2ZFB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.35 
_cell.angle_gamma         90 
_cell.entry_id            2ZFB 
_cell.length_a            110.676 
_cell.length_b            64.268 
_cell.length_c            56.396 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZFB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C FE HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc2 C FE HEM . A HEM 150 1_555 E O HOH . A HOH 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc3 B NE2 HIS 92 B HIS 92 1_555 D FE HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc4 D FE HEM . B HEM 150 1_555 F O HOH . B HOH 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     2ZFB 
_atom_sites.fract_transf_matrix[1][1]    0.009035 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003173 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01556 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018793 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 HEM A 1 150 150 HEM HEM . 
D 3 HEM B 1 150 150 HEM HEM . 
E 4 HOH A 1 151 2 HOH HOH . 
E 4 HOH A 2 152 4 HOH HOH . 
E 4 HOH A 3 153 19 HOH HOH . 
E 4 HOH A 4 154 21 HOH HOH . 
E 4 HOH A 5 155 22 HOH HOH . 
E 4 HOH A 6 156 27 HOH HOH . 
F 4 HOH B 1 151 1 HOH HOH . 
F 4 HOH B 2 152 6 HOH HOH . 
F 4 HOH B 3 153 8 HOH HOH . 
F 4 HOH B 4 154 10 HOH HOH . 
F 4 HOH B 5 155 11 HOH HOH . 
F 4 HOH B 6 156 17 HOH HOH . 
F 4 HOH B 7 157 18 HOH HOH . 
F 4 HOH B 8 158 25 HOH HOH . 
F 4 HOH B 9 159 35 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 3 5.05 -10.193 20.682 1 25.42 ? CHA HEM 150 A 1 
HETATM 2 C CHB HEM . . . C 3 7.69 -11.818 16.993 1 24.15 ? CHB HEM 150 A 1 
HETATM 3 C CHC HEM . . . C 3 6.361 -8.117 14.181 1 23.13 ? CHC HEM 150 A 1 
HETATM 4 C CHD HEM . . . C 3 3.868 -6.234 17.956 1 24.45 ? CHD HEM 150 A 1 
HETATM 5 C C1A HEM . . . C 3 5.918 -10.994 19.964 1 25.61 ? C1A HEM 150 A 1 
HETATM 6 C C2A HEM . . . C 3 6.612 -12.198 20.437 1 25.65 ? C2A HEM 150 A 1 
HETATM 7 C C3A HEM . . . C 3 7.338 -12.631 19.376 1 25.7 ? C3A HEM 150 A 1 
HETATM 8 C C4A HEM . . . C 3 7.116 -11.727 18.243 1 24.94 ? C4A HEM 150 A 1 
HETATM 9 C CMA HEM . . . C 3 8.273 -13.872 19.309 1 25.42 ? CMA HEM 150 A 1 
HETATM 10 C CAA HEM . . . C 3 6.513 -12.825 21.877 1 26.18 ? CAA HEM 150 A 1 
HETATM 11 C CBA HEM . . . C 3 6.084 -14.322 21.843 1 28.83 ? CBA HEM 150 A 1 
HETATM 12 C CGA HEM . . . C 3 5.944 -15.048 23.188 1 29.73 ? CGA HEM 150 A 1 
HETATM 13 O O1A HEM . . . C 3 4.849 -15.641 23.398 1 29.99 ? O1A HEM 150 A 1 
HETATM 14 O O2A HEM . . . C 3 6.885 -15.1 24.046 1 28.48 ? O2A HEM 150 A 1 
HETATM 15 C C1B HEM . . . C 3 7.534 -10.992 15.907 1 23.32 ? C1B HEM 150 A 1 
HETATM 16 C C2B HEM . . . C 3 8.063 -11.239 14.575 1 23.31 ? C2B HEM 150 A 1 
HETATM 17 C C3B HEM . . . C 3 7.704 -10.227 13.783 1 22.82 ? C3B HEM 150 A 1 
HETATM 18 C C4B HEM . . . C 3 6.932 -9.297 14.591 1 22.59 ? C4B HEM 150 A 1 
HETATM 19 C CMB HEM . . . C 3 8.911 -12.459 14.144 1 22.32 ? CMB HEM 150 A 1 
HETATM 20 C CAB HEM . . . C 3 8.069 -10.127 12.281 1 22.79 ? CAB HEM 150 A 1 
HETATM 21 C CBB HEM . . . C 3 8.427 -8.975 11.708 1 22.8 ? CBB HEM 150 A 1 
HETATM 22 C C1C HEM . . . C 3 5.617 -7.262 14.975 1 23.36 ? C1C HEM 150 A 1 
HETATM 23 C C2C HEM . . . C 3 5.175 -5.947 14.597 1 22.2 ? C2C HEM 150 A 1 
HETATM 24 C C3C HEM . . . C 3 4.486 -5.429 15.618 1 22.99 ? C3C HEM 150 A 1 
HETATM 25 C C4C HEM . . . C 3 4.455 -6.396 16.703 1 23.65 ? C4C HEM 150 A 1 
HETATM 26 C CMC HEM . . . C 3 5.464 -5.297 13.234 1 22.36 ? CMC HEM 150 A 1 
HETATM 27 C CAC HEM . . . C 3 3.824 -4.035 15.644 1 23.54 ? CAC HEM 150 A 1 
HETATM 28 C CBC HEM . . . C 3 4.557 -2.916 15.715 1 23.34 ? CBC HEM 150 A 1 
HETATM 29 C C1D HEM . . . C 3 3.999 -7.066 19.082 1 25.25 ? C1D HEM 150 A 1 
HETATM 30 C C2D HEM . . . C 3 3.522 -6.807 20.452 1 25.03 ? C2D HEM 150 A 1 
HETATM 31 C C3D HEM . . . C 3 3.9 -8.061 21.258 1 25.85 ? C3D HEM 150 A 1 
HETATM 32 C C4D HEM . . . C 3 4.555 -8.944 20.323 1 25.49 ? C4D HEM 150 A 1 
HETATM 33 C CMD HEM . . . C 3 2.797 -5.568 21.036 1 23.46 ? CMD HEM 150 A 1 
HETATM 34 C CAD HEM . . . C 3 3.637 -8.379 22.759 1 27.12 ? CAD HEM 150 A 1 
HETATM 35 C CBD HEM . . . C 3 4.57 -7.675 23.76 1 30.15 ? CBD HEM 150 A 1 
HETATM 36 C CGD HEM . . . C 3 4.919 -8.596 24.909 1 29.29 ? CGD HEM 150 A 1 
HETATM 37 O O1D HEM . . . C 3 4.658 -9.82 24.794 1 30.24 ? O1D HEM 150 A 1 
HETATM 38 O O2D HEM . . . C 3 5.47 -8.118 25.933 1 28.9 ? O2D HEM 150 A 1 
HETATM 39 N NA HEM . . . C 3 6.244 -10.747 18.638 1 24.61 ? NA HEM 150 A 1 
HETATM 40 N NB HEM . . . C 3 6.849 -9.8 15.88 1 23.17 ? NB HEM 150 A 1 
HETATM 41 N NC HEM . . . C 3 5.167 -7.504 16.269 1 23.83 ? NC HEM 150 A 1 
HETATM 42 N ND HEM . . . C 3 4.605 -8.331 19.066 1 24.13 ? ND HEM 150 A 1 
HETATM 43 FE FE HEM . . . C 3 5.691 -9.151 17.424 1 23.66 ? FE HEM 150 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#