data_2ZFE # _model_server_result.job_id fTpRT_QS36V4upPXiEbLcQ _model_server_result.datetime_utc '2024-11-27 22:05:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zfe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":638}' # _entry.id 2ZFE # _exptl.entry_id 2ZFE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 131.293 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description XENON _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ZFE _cell.length_a 102.41 _cell.length_b 102.41 _cell.length_c 112.47 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZFE _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 102.41 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 51.205 88.689662 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 MAN GLC C1 O1 . O2 HO2 . sing 2 ? 2 3 2 SGA MAN C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC ? 400 GLC 2 n B MAN 2 B 2 MAN ? 410 MAN 2 n B SGA 3 B 3 SGA ? 420 SGA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 229 A LYS 216 1_555 C C15 RET . A RET 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale2 E O3 L2P . A L2P 270 1_555 B C1 GLC . B GLC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale3 B O2 GLC . B GLC 1 1_555 B C1 MAN . B MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 B O6 MAN . B MAN 2 1_555 B C1 SGA . B SGA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? # _chem_comp.formula Xe _chem_comp.formula_weight 131.293 _chem_comp.id XE _chem_comp.mon_nstd_flag . _chem_comp.name XENON _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2ZFE _atom_sites.fract_transf_matrix[1][1] 0.009765 _atom_sites.fract_transf_matrix[1][2] 0.005638 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011275 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008891 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 RET A 1 250 250 RET RET . D 4 L3P A 1 260 260 L3P L1P . E 5 L2P A 1 270 270 L2P LP2 . F 6 L1P A 1 280 280 L1P L1P . G 6 L1P A 1 290 290 L1P L1P . H 6 L1P A 1 300 300 L1P L1P . I 7 XE A 1 638 638 XE XE . J 8 HOH A 1 600 600 HOH HOH . J 8 HOH A 2 601 601 HOH HOH . J 8 HOH A 3 602 602 HOH HOH . J 8 HOH A 4 603 603 HOH HOH . J 8 HOH A 5 604 604 HOH HOH . J 8 HOH A 6 605 605 HOH HOH . J 8 HOH A 7 606 606 HOH HOH . J 8 HOH A 8 607 607 HOH HOH . J 8 HOH A 9 608 608 HOH HOH . J 8 HOH A 10 609 609 HOH HOH . J 8 HOH A 11 610 610 HOH HOH . J 8 HOH A 12 611 611 HOH HOH . J 8 HOH A 13 612 612 HOH HOH . J 8 HOH A 14 613 613 HOH HOH . J 8 HOH A 15 614 614 HOH HOH . J 8 HOH A 16 615 615 HOH HOH . J 8 HOH A 17 616 616 HOH HOH . J 8 HOH A 18 617 617 HOH HOH . J 8 HOH A 19 618 618 HOH HOH . J 8 HOH A 20 619 619 HOH HOH . J 8 HOH A 21 620 620 HOH HOH . J 8 HOH A 22 621 621 HOH HOH . J 8 HOH A 23 622 622 HOH HOH . J 8 HOH A 24 623 623 HOH HOH . J 8 HOH A 25 624 624 HOH HOH . J 8 HOH A 26 625 625 HOH HOH . J 8 HOH A 27 626 626 HOH HOH . J 8 HOH A 28 627 627 HOH HOH . J 8 HOH A 29 628 628 HOH HOH . J 8 HOH A 30 629 629 HOH HOH . J 8 HOH A 31 630 630 HOH HOH . J 8 HOH A 32 631 631 HOH HOH . J 8 HOH A 33 632 632 HOH HOH . J 8 HOH A 34 633 633 HOH HOH . J 8 HOH A 35 634 634 HOH HOH . J 8 HOH A 36 635 635 HOH HOH . J 8 HOH A 37 636 636 HOH HOH . J 8 HOH A 38 637 637 HOH HOH . J 8 HOH A 39 639 639 HOH HOH . J 8 HOH A 40 640 640 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol XE _atom_site.label_atom_id XE _atom_site.label_comp_id XE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 7 _atom_site.Cartn_x 43.636 _atom_site.Cartn_y 21.647 _atom_site.Cartn_z 38.056 _atom_site.occupancy 0.29 _atom_site.B_iso_or_equiv 44.2 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id XE _atom_site.auth_comp_id XE _atom_site.auth_seq_id 638 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #