data_2ZFX # _model_server_result.job_id jsRxMtnPOLlXYsc8sa6znA _model_server_result.datetime_utc '2025-03-09 02:20:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zfx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 2ZFX # _exptl.entry_id 2ZFX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 458.63 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-3-{4-[1-ethyl-1-(4-{[(2R)-2-hydroxy-3,3-dimethylbutyl]oxy}-3-methylphenyl)propyl]-2-methylphenoxy}propane-1,2-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ZFX _cell.length_a 44.188 _cell.length_b 136.344 _cell.length_c 47.29 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZFX _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H42 O5' _chem_comp.formula_weight 458.63 _chem_comp.id YR3 _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-3-{4-[1-ethyl-1-(4-{[(2R)-2-hydroxy-3,3-dimethylbutyl]oxy}-3-methylphenyl)propyl]-2-methylphenoxy}propane-1,2-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (2S)-3-[4-(3-{4-[(2R)-2-hydroxy-3,3-dimethylbutoxy]-3-methylphenyl}pentan-3-yl)-2-methylphenoxy]propane-1,2-diol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 YR3 doub 376 n y C1 C6 YR3 sing 377 n y C2 C3 YR3 sing 378 n y C2 O27 YR3 sing 379 n n C3 C4 YR3 doub 380 n y C3 C19 YR3 sing 381 n n C4 C5 YR3 sing 382 n y C5 C6 YR3 doub 383 n y C5 C7 YR3 sing 384 n n C7 C8 YR3 sing 385 n n C7 C9 YR3 sing 386 n n C7 C10 YR3 sing 387 n n C8 C13 YR3 doub 388 n y C8 C17 YR3 sing 389 n y C9 C12 YR3 sing 390 n n C10 C11 YR3 sing 391 n n C13 C14 YR3 sing 392 n y C14 C15 YR3 doub 393 n y C14 C18 YR3 sing 394 n n C15 O20 YR3 sing 395 n n C15 C16 YR3 sing 396 n y O33 C22 YR3 sing 397 n n C22 C23 YR3 sing 398 n n C22 C21 YR3 sing 399 n n C23 C26 YR3 sing 400 n n C23 C25 YR3 sing 401 n n C23 C24 YR3 sing 402 n n C21 O20 YR3 sing 403 n n C16 C17 YR3 doub 404 n y O27 C28 YR3 sing 405 n n C28 C29 YR3 sing 406 n n C29 O32 YR3 sing 407 n n C29 C30 YR3 sing 408 n n C30 O31 YR3 sing 409 n n C1 H1 YR3 sing 410 n n C4 H4 YR3 sing 411 n n C6 H6 YR3 sing 412 n n C9 H9 YR3 sing 413 n n C9 H9A YR3 sing 414 n n C10 H10 YR3 sing 415 n n C10 H10A YR3 sing 416 n n C11 H11 YR3 sing 417 n n C11 H11A YR3 sing 418 n n C11 H11B YR3 sing 419 n n C12 H12 YR3 sing 420 n n C12 H12A YR3 sing 421 n n C12 H12B YR3 sing 422 n n C13 H13 YR3 sing 423 n n O33 HO33 YR3 sing 424 n n C22 H22 YR3 sing 425 n n C26 H26 YR3 sing 426 n n C26 H26A YR3 sing 427 n n C26 H26B YR3 sing 428 n n C25 H25 YR3 sing 429 n n C25 H25A YR3 sing 430 n n C25 H25B YR3 sing 431 n n C24 H24 YR3 sing 432 n n C24 H24A YR3 sing 433 n n C24 H24B YR3 sing 434 n n C21 H21 YR3 sing 435 n n C21 H21A YR3 sing 436 n n C18 H18 YR3 sing 437 n n C18 H18A YR3 sing 438 n n C18 H18B YR3 sing 439 n n C16 H16 YR3 sing 440 n n C17 H17 YR3 sing 441 n n C19 H19 YR3 sing 442 n n C19 H19A YR3 sing 443 n n C19 H19B YR3 sing 444 n n C28 H28 YR3 sing 445 n n C28 H28A YR3 sing 446 n n C29 H29 YR3 sing 447 n n O32 HO32 YR3 sing 448 n n C30 H30 YR3 sing 449 n n C30 H30A YR3 sing 450 n n O31 HO31 YR3 sing 451 n n # _atom_sites.entry_id 2ZFX _atom_sites.fract_transf_matrix[1][1] 0.022631 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007334 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021146 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 YR3 A 1 1 1 YR3 MOL . D 4 HOH A 1 424 1 HOH HOH . D 4 HOH A 2 425 2 HOH HOH . D 4 HOH A 3 426 3 HOH HOH . D 4 HOH A 4 427 4 HOH HOH . D 4 HOH A 5 428 5 HOH HOH . D 4 HOH A 6 429 6 HOH HOH . D 4 HOH A 7 430 7 HOH HOH . D 4 HOH A 8 431 8 HOH HOH . D 4 HOH A 9 432 9 HOH HOH . D 4 HOH A 10 433 10 HOH HOH . D 4 HOH A 11 434 11 HOH HOH . D 4 HOH A 12 435 12 HOH HOH . D 4 HOH A 13 436 13 HOH HOH . D 4 HOH A 14 437 14 HOH HOH . D 4 HOH A 15 438 15 HOH HOH . D 4 HOH A 16 439 16 HOH HOH . D 4 HOH A 17 440 17 HOH HOH . D 4 HOH A 18 441 18 HOH HOH . D 4 HOH A 19 442 19 HOH HOH . D 4 HOH A 20 443 20 HOH HOH . D 4 HOH A 21 444 21 HOH HOH . D 4 HOH A 22 445 22 HOH HOH . D 4 HOH A 23 446 24 HOH HOH . D 4 HOH A 24 447 25 HOH HOH . D 4 HOH A 25 448 26 HOH HOH . D 4 HOH A 26 449 27 HOH HOH . D 4 HOH A 27 450 28 HOH HOH . D 4 HOH A 28 451 29 HOH HOH . D 4 HOH A 29 452 30 HOH HOH . D 4 HOH A 30 453 31 HOH HOH . D 4 HOH A 31 454 32 HOH HOH . D 4 HOH A 32 455 33 HOH HOH . D 4 HOH A 33 456 34 HOH HOH . D 4 HOH A 34 457 36 HOH HOH . D 4 HOH A 35 458 39 HOH HOH . D 4 HOH A 36 459 40 HOH HOH . D 4 HOH A 37 460 41 HOH HOH . D 4 HOH A 38 461 42 HOH HOH . D 4 HOH A 39 462 43 HOH HOH . D 4 HOH A 40 463 44 HOH HOH . D 4 HOH A 41 464 45 HOH HOH . D 4 HOH A 42 465 46 HOH HOH . D 4 HOH A 43 466 47 HOH HOH . D 4 HOH A 44 467 48 HOH HOH . D 4 HOH A 45 468 49 HOH HOH . D 4 HOH A 46 469 50 HOH HOH . D 4 HOH A 47 470 51 HOH HOH . D 4 HOH A 48 471 52 HOH HOH . D 4 HOH A 49 472 53 HOH HOH . D 4 HOH A 50 473 54 HOH HOH . D 4 HOH A 51 474 55 HOH HOH . D 4 HOH A 52 475 56 HOH HOH . D 4 HOH A 53 476 57 HOH HOH . D 4 HOH A 54 477 58 HOH HOH . D 4 HOH A 55 478 59 HOH HOH . D 4 HOH A 56 479 60 HOH HOH . D 4 HOH A 57 480 61 HOH HOH . D 4 HOH A 58 481 63 HOH HOH . D 4 HOH A 59 482 64 HOH HOH . E 4 HOH C 1 62 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 YR3 . A . C 3 9.888 11.955 9.985 0.5 7.6 ? C1 YR3 1 A 1 HETATM 2 C C1 YR3 . B . C 3 10.161 11.733 10.323 0.5 10.18 ? C1 YR3 1 A 1 HETATM 3 C C2 YR3 . A . C 3 9.308 11.286 11.062 0.5 7.83 ? C2 YR3 1 A 1 HETATM 4 C C2 YR3 . B . C 3 9.537 11.021 11.339 0.5 10.13 ? C2 YR3 1 A 1 HETATM 5 C C3 YR3 . A . C 3 9.913 10.002 11.537 0.5 8.52 ? C3 YR3 1 A 1 HETATM 6 C C3 YR3 . B . C 3 10.071 9.685 11.736 0.5 9.95 ? C3 YR3 1 A 1 HETATM 7 C C4 YR3 . A . C 3 11.029 9.513 10.88 0.5 8.27 ? C4 YR3 1 A 1 HETATM 8 C C4 YR3 . B . C 3 11.18 9.183 11.071 0.5 10.01 ? C4 YR3 1 A 1 HETATM 9 C C5 YR3 . A . C 3 11.585 10.163 9.775 0.5 7.59 ? C5 YR3 1 A 1 HETATM 10 C C5 YR3 . B . C 3 11.786 9.904 10.025 0.5 9.23 ? C5 YR3 1 A 1 HETATM 11 C C6 YR3 . A . C 3 11.019 11.393 9.359 0.5 7.86 ? C6 YR3 1 A 1 HETATM 12 C C6 YR3 . B . C 3 11.273 11.174 9.691 0.5 9.91 ? C6 YR3 1 A 1 HETATM 13 C C7 YR3 . A . C 3 12.847 9.555 9.137 0.5 7.12 ? C7 YR3 1 A 1 HETATM 14 C C7 YR3 . B . C 3 13.023 9.32 9.329 0.5 8.78 ? C7 YR3 1 A 1 HETATM 15 C C8 YR3 . A . C 3 13.041 9.823 7.651 0.5 6.84 ? C8 YR3 1 A 1 HETATM 16 C C8 YR3 . B . C 3 13.189 9.707 7.866 0.5 8 ? C8 YR3 1 A 1 HETATM 17 C C9 YR3 . A . C 3 12.946 8.014 9.337 0.5 7.53 ? C9 YR3 1 A 1 HETATM 18 C C9 YR3 . B . C 3 13.029 7.763 9.374 0.5 8.3 ? C9 YR3 1 A 1 HETATM 19 C C10 YR3 . A . C 3 14.006 10.169 9.965 0.5 5.31 ? C10 YR3 1 A 1 HETATM 20 C C10 YR3 . B . C 3 14.243 9.782 10.165 0.5 6.97 ? C10 YR3 1 A 1 HETATM 21 C C11 YR3 . A . C 3 14.256 11.682 9.836 0.5 3.13 ? C11 YR3 1 A 1 HETATM 22 C C11 YR3 . B . C 3 14.452 11.277 10.397 0.5 8.58 ? C11 YR3 1 A 1 HETATM 23 C C12 YR3 . A . C 3 12.098 7.098 8.459 0.5 5.56 ? C12 YR3 1 A 1 HETATM 24 C C12 YR3 . B . C 3 12.035 6.984 8.512 0.5 7.19 ? C12 YR3 1 A 1 HETATM 25 C C13 YR3 . A . C 3 14.335 9.998 7.128 0.5 6.6 ? C13 YR3 1 A 1 HETATM 26 C C13 YR3 . B . C 3 14.469 9.963 7.348 0.5 8.2 ? C13 YR3 1 A 1 HETATM 27 C C14 YR3 . A . C 3 14.538 10.238 5.776 0.5 7.81 ? C14 YR3 1 A 1 HETATM 28 C C14 YR3 . B . C 3 14.657 10.314 6.022 0.5 8.83 ? C14 YR3 1 A 1 HETATM 29 C C15 YR3 . A . C 3 13.358 10.284 4.883 0.5 7.9 ? C15 YR3 1 A 1 HETATM 30 C C15 YR3 . B . C 3 13.47 10.404 5.142 0.5 8.69 ? C15 YR3 1 A 1 HETATM 31 O O33 YR3 . A . C 3 14.082 12.265 1.416 0.5 9.03 ? O33 YR3 1 A 1 HETATM 32 O O33 YR3 . B . C 3 13.985 12.122 1.469 0.5 11.77 ? O33 YR3 1 A 1 HETATM 33 C C22 YR3 . A . C 3 12.928 11.379 1.359 0.5 9.51 ? C22 YR3 1 A 1 HETATM 34 C C22 YR3 . B . C 3 12.876 11.187 1.593 0.5 10.69 ? C22 YR3 1 A 1 HETATM 35 C C23 YR3 . A . C 3 11.844 11.927 0.423 0.5 9.37 ? C23 YR3 1 A 1 HETATM 36 C C23 YR3 . B . C 3 11.697 11.563 0.691 0.5 10.58 ? C23 YR3 1 A 1 HETATM 37 C C26 YR3 . A . C 3 10.527 11.174 0.626 0.5 8.75 ? C26 YR3 1 A 1 HETATM 38 C C26 YR3 . B . C 3 10.574 10.525 0.811 0.5 8.6 ? C26 YR3 1 A 1 HETATM 39 C C25 YR3 . A . C 3 11.577 13.418 0.602 0.5 9.22 ? C25 YR3 1 A 1 HETATM 40 C C25 YR3 . B . C 3 11.104 12.916 1.064 0.5 10.65 ? C25 YR3 1 A 1 HETATM 41 C C24 YR3 . A . C 3 12.353 11.692 -0.989 0.5 8.86 ? C24 YR3 1 A 1 HETATM 42 C C24 YR3 . B . C 3 12.213 11.6 -0.743 0.5 10.12 ? C24 YR3 1 A 1 HETATM 43 C C21 YR3 . A . C 3 12.444 11.07 2.781 0.5 8.31 ? C21 YR3 1 A 1 HETATM 44 C C21 YR3 . B . C 3 12.483 11.119 3.067 0.5 9.49 ? C21 YR3 1 A 1 HETATM 45 O O20 YR3 . A . C 3 13.53 10.517 3.537 0.5 8.34 ? O20 YR3 1 A 1 HETATM 46 O O20 YR3 . B . C 3 13.635 10.746 3.821 0.5 9.46 ? O20 YR3 1 A 1 HETATM 47 C C18 YR3 . A . C 3 15.921 10.438 5.213 0.5 7.08 ? C18 YR3 1 A 1 HETATM 48 C C18 YR3 . B . C 3 16.035 10.589 5.476 0.5 8.91 ? C18 YR3 1 A 1 HETATM 49 C C16 YR3 . A . C 3 12.086 10.098 5.431 0.5 5.54 ? C16 YR3 1 A 1 HETATM 50 C C16 YR3 . B . C 3 12.207 10.134 5.675 0.5 6.09 ? C16 YR3 1 A 1 HETATM 51 C C17 YR3 . A . C 3 11.938 9.876 6.788 0.5 5.47 ? C17 YR3 1 A 1 HETATM 52 C C17 YR3 . B . C 3 12.075 9.805 7.015 0.5 7.34 ? C17 YR3 1 A 1 HETATM 53 C C19 YR3 . A . C 3 9.34 9.226 12.706 0.5 7.38 ? C19 YR3 1 A 1 HETATM 54 C C19 YR3 . B . C 3 9.408 8.895 12.836 0.5 9.3 ? C19 YR3 1 A 1 HETATM 55 O O27 YR3 . A . C 3 8.231 11.797 11.73 0.5 8.91 ? O27 YR3 1 A 1 HETATM 56 O O27 YR3 . B . C 3 8.457 11.537 11.992 0.5 9.95 ? O27 YR3 1 A 1 HETATM 57 C C28 YR3 . A . C 3 8.524 12.263 13.05 0.5 8.62 ? C28 YR3 1 A 1 HETATM 58 C C28 YR3 . B . C 3 8.671 12.221 13.218 0.5 9.59 ? C28 YR3 1 A 1 HETATM 59 C C29 YR3 . A . C 3 7.54 13.3 13.563 0.5 11 ? C29 YR3 1 A 1 HETATM 60 C C29 YR3 . B . C 3 7.564 13.241 13.379 0.5 11.35 ? C29 YR3 1 A 1 HETATM 61 O O32 YR3 . A . C 3 7.48 14.405 12.652 0.5 10.87 ? O32 YR3 1 A 1 HETATM 62 O O32 YR3 . B . C 3 7.792 14.298 12.447 0.5 11.48 ? O32 YR3 1 A 1 HETATM 63 C C30 YR3 . A . C 3 6.168 12.653 13.765 0.5 9.53 ? C30 YR3 1 A 1 HETATM 64 C C30 YR3 . B . C 3 6.204 12.592 13.112 0.5 10 ? C30 YR3 1 A 1 HETATM 65 O O31 YR3 . A . C 3 5.159 13.641 14.027 0.5 8.76 ? O31 YR3 1 A 1 HETATM 66 O O31 YR3 . B . C 3 5.866 11.722 14.202 0.5 9.01 ? O31 YR3 1 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 66 #