data_2ZG0 # _model_server_result.job_id DTHmxdZnqHvfTaS0N81gVQ _model_server_result.datetime_utc '2024-12-17 16:36:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zg0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":701}' # _entry.id 2ZG0 # _exptl.entry_id 2ZG0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.515 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (S)-N-(4-carbamimidoylbenzyl)-1-(3-cyclohexylpropanoyl)pyrrolidine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.6 _cell.angle_gamma 90 _cell.entry_id 2ZG0 _cell.length_a 70.7 _cell.length_b 71.4 _cell.length_c 72.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZG0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 C C GLU 10 I GLU 62 1_555 C N TYS 11 I TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 C C TYS 11 I TYS 63 1_555 C N LEU 12 I LEU 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C22 H32 N4 O2' _chem_comp.formula_weight 384.515 _chem_comp.id 50U _chem_comp.mon_nstd_flag . _chem_comp.name (S)-N-(4-carbamimidoylbenzyl)-1-(3-cyclohexylpropanoyl)pyrrolidine-2-carboxamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 50U sing 1 n n C2 C1 50U sing 2 n n C24 N23 50U sing 3 n n C24 C25 50U sing 4 n n N23 C7 50U sing 5 n n C3 C4 50U sing 6 n n C30 C25 50U doub 7 n y C30 C29 50U sing 8 n y C7 O22 50U doub 9 n n C7 C1 50U sing 10 n n C1 N1 50U sing 11 n n C25 C26 50U sing 12 n y C29 C28 50U doub 13 n y C4 N1 50U sing 14 n n N1 C14 50U sing 15 n n C26 C27 50U doub 16 n y C28 C27 50U sing 17 n y C28 C21 50U sing 18 n n C14 O32 50U doub 19 n n C14 C5 50U sing 20 n n N47 C21 50U sing 21 n n C21 N46 50U doub 22 n n C5 C43 50U sing 23 n n C46 C45 50U sing 24 n n C46 C47 50U sing 25 n n C45 C44 50U sing 26 n n C44 C43 50U sing 27 n n C44 C49 50U sing 28 n n C47 C48 50U sing 29 n n C48 C49 50U sing 30 n n C1 H1 50U sing 31 n n N23 HN23 50U sing 32 n n C24 H24 50U sing 33 n n C24 H24A 50U sing 34 n n C26 H26 50U sing 35 n n C27 H27 50U sing 36 n n N46 HN46 50U sing 37 n n N47 HN47 50U sing 38 n n N47 HN4A 50U sing 39 n n C29 H29 50U sing 40 n n C30 H30 50U sing 41 n n C2 H2 50U sing 42 n n C2 H2A 50U sing 43 n n C3 H3 50U sing 44 n n C3 H3A 50U sing 45 n n C4 H4 50U sing 46 n n C4 H4A 50U sing 47 n n C5 H5 50U sing 48 n n C5 H5A 50U sing 49 n n C43 H43 50U sing 50 n n C43 H43A 50U sing 51 n n C44 H44 50U sing 52 n n C49 H49 50U sing 53 n n C49 H49A 50U sing 54 n n C48 H48 50U sing 55 n n C48 H48A 50U sing 56 n n C47 H47 50U sing 57 n n C47 H47A 50U sing 58 n n C46 H46 50U sing 59 n n C46 H46A 50U sing 60 n n C45 H45 50U sing 61 n n C45 H45A 50U sing 62 n n # _atom_sites.entry_id 2ZG0 _atom_sites.fract_transf_matrix[1][1] 0.014139 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002649 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013997 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013985 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA H 1 950 950 NA NA . E 4 NA H 1 951 951 NA NA . F 5 50U H 1 701 701 50U 50U . G 6 HOH L 1 1005 1005 HOH HOH . G 6 HOH L 2 1010 1010 HOH HOH . G 6 HOH L 3 1017 1017 HOH HOH . G 6 HOH L 4 1033 1033 HOH HOH . G 6 HOH L 5 1044 1044 HOH HOH . G 6 HOH L 6 1050 1050 HOH HOH . G 6 HOH L 7 1062 1062 HOH HOH . G 6 HOH L 8 1063 1063 HOH HOH . G 6 HOH L 9 1081 1081 HOH HOH . G 6 HOH L 10 1098 1098 HOH HOH . G 6 HOH L 11 1101 1101 HOH HOH . G 6 HOH L 12 1116 1116 HOH HOH . G 6 HOH L 13 1121 1121 HOH HOH . G 6 HOH L 14 1123 1123 HOH HOH . G 6 HOH L 15 1126 1126 HOH HOH . G 6 HOH L 16 1135 1135 HOH HOH . G 6 HOH L 17 1141 1141 HOH HOH . G 6 HOH L 18 1144 1144 HOH HOH . G 6 HOH L 19 1154 1154 HOH HOH . G 6 HOH L 20 1156 1156 HOH HOH . H 6 HOH H 1 1001 1001 HOH HOH . H 6 HOH H 2 1002 1002 HOH HOH . H 6 HOH H 3 1003 1003 HOH HOH . H 6 HOH H 4 1004 1004 HOH HOH . H 6 HOH H 5 1006 1006 HOH HOH . H 6 HOH H 6 1007 1007 HOH HOH . H 6 HOH H 7 1008 1008 HOH HOH . H 6 HOH H 8 1009 1009 HOH HOH . H 6 HOH H 9 1011 1011 HOH HOH . H 6 HOH H 10 1012 1012 HOH HOH . H 6 HOH H 11 1013 1013 HOH HOH . H 6 HOH H 12 1014 1014 HOH HOH . H 6 HOH H 13 1015 1015 HOH HOH . H 6 HOH H 14 1016 1016 HOH HOH . H 6 HOH H 15 1018 1018 HOH HOH . H 6 HOH H 16 1019 1019 HOH HOH . H 6 HOH H 17 1020 1020 HOH HOH . H 6 HOH H 18 1021 1021 HOH HOH . H 6 HOH H 19 1022 1022 HOH HOH . H 6 HOH H 20 1023 1023 HOH HOH . H 6 HOH H 21 1024 1024 HOH HOH . H 6 HOH H 22 1025 1025 HOH HOH . H 6 HOH H 23 1026 1026 HOH HOH . H 6 HOH H 24 1027 1027 HOH HOH . H 6 HOH H 25 1028 1028 HOH HOH . H 6 HOH H 26 1029 1029 HOH HOH . H 6 HOH H 27 1030 1030 HOH HOH . H 6 HOH H 28 1031 1031 HOH HOH . H 6 HOH H 29 1032 1032 HOH HOH . H 6 HOH H 30 1034 1034 HOH HOH . H 6 HOH H 31 1035 1035 HOH HOH . H 6 HOH H 32 1036 1036 HOH HOH . H 6 HOH H 33 1037 1037 HOH HOH . H 6 HOH H 34 1038 1038 HOH HOH . H 6 HOH H 35 1039 1039 HOH HOH . H 6 HOH H 36 1040 1040 HOH HOH . H 6 HOH H 37 1041 1041 HOH HOH . H 6 HOH H 38 1042 1042 HOH HOH . H 6 HOH H 39 1043 1043 HOH HOH . H 6 HOH H 40 1045 1045 HOH HOH . H 6 HOH H 41 1046 1046 HOH HOH . H 6 HOH H 42 1047 1047 HOH HOH . H 6 HOH H 43 1048 1048 HOH HOH . H 6 HOH H 44 1049 1049 HOH HOH . H 6 HOH H 45 1051 1051 HOH HOH . H 6 HOH H 46 1052 1052 HOH HOH . H 6 HOH H 47 1053 1053 HOH HOH . H 6 HOH H 48 1054 1054 HOH HOH . H 6 HOH H 49 1055 1055 HOH HOH . H 6 HOH H 50 1056 1056 HOH HOH . H 6 HOH H 51 1057 1057 HOH HOH . H 6 HOH H 52 1058 1058 HOH HOH . H 6 HOH H 53 1059 1059 HOH HOH . H 6 HOH H 54 1060 1060 HOH HOH . H 6 HOH H 55 1061 1061 HOH HOH . H 6 HOH H 56 1064 1064 HOH HOH . H 6 HOH H 57 1065 1065 HOH HOH . H 6 HOH H 58 1066 1066 HOH HOH . H 6 HOH H 59 1067 1067 HOH HOH . H 6 HOH H 60 1068 1068 HOH HOH . H 6 HOH H 61 1069 1069 HOH HOH . H 6 HOH H 62 1070 1070 HOH HOH . H 6 HOH H 63 1071 1071 HOH HOH . H 6 HOH H 64 1072 1072 HOH HOH . H 6 HOH H 65 1073 1073 HOH HOH . H 6 HOH H 66 1074 1074 HOH HOH . H 6 HOH H 67 1075 1075 HOH HOH . H 6 HOH H 68 1076 1076 HOH HOH . H 6 HOH H 69 1077 1077 HOH HOH . H 6 HOH H 70 1078 1078 HOH HOH . H 6 HOH H 71 1079 1079 HOH HOH . H 6 HOH H 72 1080 1080 HOH HOH . H 6 HOH H 73 1082 1082 HOH HOH . H 6 HOH H 74 1083 1083 HOH HOH . H 6 HOH H 75 1084 1084 HOH HOH . H 6 HOH H 76 1085 1085 HOH HOH . H 6 HOH H 77 1086 1086 HOH HOH . H 6 HOH H 78 1087 1087 HOH HOH . H 6 HOH H 79 1088 1088 HOH HOH . H 6 HOH H 80 1089 1089 HOH HOH . H 6 HOH H 81 1090 1090 HOH HOH . H 6 HOH H 82 1091 1091 HOH HOH . H 6 HOH H 83 1092 1092 HOH HOH . H 6 HOH H 84 1093 1093 HOH HOH . H 6 HOH H 85 1094 1094 HOH HOH . H 6 HOH H 86 1095 1095 HOH HOH . H 6 HOH H 87 1096 1096 HOH HOH . H 6 HOH H 88 1097 1097 HOH HOH . H 6 HOH H 89 1099 1099 HOH HOH . H 6 HOH H 90 1100 1100 HOH HOH . H 6 HOH H 91 1102 1102 HOH HOH . H 6 HOH H 92 1103 1103 HOH HOH . H 6 HOH H 93 1104 1104 HOH HOH . H 6 HOH H 94 1105 1105 HOH HOH . H 6 HOH H 95 1106 1106 HOH HOH . H 6 HOH H 96 1107 1107 HOH HOH . H 6 HOH H 97 1108 1108 HOH HOH . H 6 HOH H 98 1109 1109 HOH HOH . H 6 HOH H 99 1110 1110 HOH HOH . H 6 HOH H 100 1111 1111 HOH HOH . H 6 HOH H 101 1112 1112 HOH HOH . H 6 HOH H 102 1113 1113 HOH HOH . H 6 HOH H 103 1114 1114 HOH HOH . H 6 HOH H 104 1115 1115 HOH HOH . H 6 HOH H 105 1117 1117 HOH HOH . H 6 HOH H 106 1118 1118 HOH HOH . H 6 HOH H 107 1119 1119 HOH HOH . H 6 HOH H 108 1120 1120 HOH HOH . H 6 HOH H 109 1122 1122 HOH HOH . H 6 HOH H 110 1124 1124 HOH HOH . H 6 HOH H 111 1125 1125 HOH HOH . H 6 HOH H 112 1127 1127 HOH HOH . H 6 HOH H 113 1128 1128 HOH HOH . H 6 HOH H 114 1129 1129 HOH HOH . H 6 HOH H 115 1130 1130 HOH HOH . H 6 HOH H 116 1131 1131 HOH HOH . H 6 HOH H 117 1132 1132 HOH HOH . H 6 HOH H 118 1133 1133 HOH HOH . H 6 HOH H 119 1134 1134 HOH HOH . H 6 HOH H 120 1136 1136 HOH HOH . H 6 HOH H 121 1137 1137 HOH HOH . H 6 HOH H 122 1138 1138 HOH HOH . H 6 HOH H 123 1139 1139 HOH HOH . H 6 HOH H 124 1140 1140 HOH HOH . H 6 HOH H 125 1142 1142 HOH HOH . H 6 HOH H 126 1143 1143 HOH HOH . H 6 HOH H 127 1145 1145 HOH HOH . H 6 HOH H 128 1146 1146 HOH HOH . H 6 HOH H 129 1147 1147 HOH HOH . H 6 HOH H 130 1148 1148 HOH HOH . H 6 HOH H 131 1149 1149 HOH HOH . H 6 HOH H 132 1150 1150 HOH HOH . H 6 HOH H 133 1151 1151 HOH HOH . H 6 HOH H 134 1152 1152 HOH HOH . H 6 HOH H 135 1153 1153 HOH HOH . H 6 HOH H 136 1155 1155 HOH HOH . H 6 HOH H 137 1157 1157 HOH HOH . H 6 HOH H 138 1158 1158 HOH HOH . H 6 HOH H 139 1159 1159 HOH HOH . H 6 HOH H 140 1160 1160 HOH HOH . H 6 HOH H 141 1162 1162 HOH HOH . H 6 HOH H 142 1163 1163 HOH HOH . H 6 HOH H 143 1164 1164 HOH HOH . H 6 HOH H 144 1165 1165 HOH HOH . H 6 HOH H 145 1166 1166 HOH HOH . I 6 HOH I 1 1161 1161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C44 50U . . . F 5 19.582 -14.082 24.764 1 41.64 ? C44 50U 701 H 1 HETATM 2 C C45 50U . . . F 5 19.759 -13.34 26.11 1 44.42 ? C45 50U 701 H 1 HETATM 3 C C46 50U . . . F 5 21.095 -12.552 26.209 1 43.02 ? C46 50U 701 H 1 HETATM 4 C C47 50U . . . F 5 22.328 -13.472 25.935 1 42.54 ? C47 50U 701 H 1 HETATM 5 C C48 50U . . . F 5 22.19 -14.109 24.534 1 42.83 ? C48 50U 701 H 1 HETATM 6 C C49 50U . . . F 5 20.861 -14.926 24.449 1 49.11 ? C49 50U 701 H 1 HETATM 7 C C43 50U . . . F 5 18.295 -14.989 24.795 1 27.71 ? C43 50U 701 H 1 HETATM 8 C C5 50U . . . F 5 17.776 -15.249 23.354 1 22.63 ? C5 50U 701 H 1 HETATM 9 C C14 50U . . . F 5 17.672 -13.926 22.612 1 22.22 ? C14 50U 701 H 1 HETATM 10 O O32 50U . . . F 5 16.747 -13.208 22.996 1 27.77 ? O32 50U 701 H 1 HETATM 11 N N1 50U . . . F 5 18.432 -13.528 21.656 1 25.18 ? N1 50U 701 H 1 HETATM 12 C C1 50U . . . F 5 18.218 -12.194 21.124 1 24.19 ? C1 50U 701 H 1 HETATM 13 C C7 50U . . . F 5 16.877 -12.105 20.429 1 21.03 ? C7 50U 701 H 1 HETATM 14 O O22 50U . . . F 5 16.513 -13.116 19.848 1 19.41 ? O22 50U 701 H 1 HETATM 15 C C2 50U . . . F 5 19.368 -12.218 20.08 1 29.2 ? C2 50U 701 H 1 HETATM 16 C C3 50U . . . F 5 20.398 -13.209 20.68 1 28.29 ? C3 50U 701 H 1 HETATM 17 C C4 50U . . . F 5 19.55 -14.369 21.265 1 28.76 ? C4 50U 701 H 1 HETATM 18 N N23 50U . . . F 5 16.25 -10.995 20.489 1 19.37 ? N23 50U 701 H 1 HETATM 19 C C24 50U . . . F 5 14.944 -10.959 19.845 1 15.77 ? C24 50U 701 H 1 HETATM 20 C C25 50U . . . F 5 13.863 -10.89 20.945 1 18.68 ? C25 50U 701 H 1 HETATM 21 C C26 50U . . . F 5 13.376 -12.062 21.521 1 16.88 ? C26 50U 701 H 1 HETATM 22 C C27 50U . . . F 5 12.401 -12.052 22.516 1 19.24 ? C27 50U 701 H 1 HETATM 23 C C28 50U . . . F 5 11.864 -10.84 22.985 1 19.04 ? C28 50U 701 H 1 HETATM 24 C C21 50U . . . F 5 10.807 -10.811 24.063 1 28.86 ? C21 50U 701 H 1 HETATM 25 N N46 50U . . . F 5 10.502 -9.698 24.608 1 16.42 ? N46 50U 701 H 1 HETATM 26 N N47 50U . . . F 5 10.221 -11.889 24.43 1 23.21 ? N47 50U 701 H 1 HETATM 27 C C29 50U . . . F 5 12.349 -9.662 22.411 1 17.74 ? C29 50U 701 H 1 HETATM 28 C C30 50U . . . F 5 13.332 -9.689 21.408 1 23.29 ? C30 50U 701 H 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 28 #