data_2ZG8 # _model_server_result.job_id zPnaMsHD54IHIUyVesy8gw _model_server_result.datetime_utc '2025-08-31 12:01:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zg8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":190}' # _entry.id 2ZG8 # _exptl.entry_id 2ZG8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ZG8 _cell.length_a 181.339 _cell.length_b 181.339 _cell.length_c 181.339 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZG8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 13 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 14 'crystal symmetry operation' 14_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 15 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 16 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 17 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 18 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 19 'crystal symmetry operation' 19_555 -x,-z,-y -1 0 0 0 0 -1 0 -1 0 0 0 0 20 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 21 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 22 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 23 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 24 'crystal symmetry operation' 24_555 -z,-y,-x 0 0 -1 0 -1 0 -1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N ? 6 O N N ? 6 P N N ? 6 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 45 X GLU 45 1_555 H PD PLL . X PLL 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc2 A OE1 GLU 45 X GLU 45 1_555 J PD PLL . X PLL 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc3 A OD1 ASP 80 X ASP 80 1_555 C CD CD . X CD 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc4 A NE2 HIS 114 X HIS 114 1_555 I PD PLL . X PLL 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc5 B PD PD . X PD 175 1_555 R O HOH . X HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc6 C CD CD . X CD 176 1_555 R O HOH . X HOH 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 2ZG8 _atom_sites.fract_transf_matrix[1][1] 0.005515 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005515 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PD X 1 175 2 PD PD . C 3 CD X 1 176 1 CD CD2 . D 4 SO4 X 1 177 1 SO4 SO4 . E 4 SO4 X 1 178 2 SO4 SO4 . F 4 SO4 X 1 179 3 SO4 SO4 . G 4 SO4 X 1 180 4 SO4 SO4 . H 5 PLL X 1 181 1 PLL PDA . I 5 PLL X 1 182 3 PLL PDA . J 5 PLL X 1 183 4 PLL PDA . K 6 EDO X 1 184 1 EDO EDO . L 6 EDO X 1 185 2 EDO EDO . M 6 EDO X 1 186 3 EDO EDO . N 6 EDO X 1 187 4 EDO EDO . O 6 EDO X 1 188 5 EDO EDO . P 6 EDO X 1 189 6 EDO EDO . Q 6 EDO X 1 190 7 EDO EDO . R 7 HOH X 1 191 1 HOH HOH . R 7 HOH X 2 192 2 HOH HOH . R 7 HOH X 3 193 3 HOH HOH . R 7 HOH X 4 194 4 HOH HOH . R 7 HOH X 5 195 5 HOH HOH . R 7 HOH X 6 196 6 HOH HOH . R 7 HOH X 7 197 7 HOH HOH . R 7 HOH X 8 198 8 HOH HOH . R 7 HOH X 9 199 9 HOH HOH . R 7 HOH X 10 200 10 HOH HOH . R 7 HOH X 11 201 11 HOH HOH . R 7 HOH X 12 202 12 HOH HOH . R 7 HOH X 13 203 13 HOH HOH . R 7 HOH X 14 204 14 HOH HOH . R 7 HOH X 15 205 15 HOH HOH . R 7 HOH X 16 206 16 HOH HOH . R 7 HOH X 17 207 17 HOH HOH . R 7 HOH X 18 208 18 HOH HOH . R 7 HOH X 19 209 19 HOH HOH . R 7 HOH X 20 210 20 HOH HOH . R 7 HOH X 21 211 21 HOH HOH . R 7 HOH X 22 212 22 HOH HOH . R 7 HOH X 23 213 23 HOH HOH . R 7 HOH X 24 214 24 HOH HOH . R 7 HOH X 25 215 25 HOH HOH . R 7 HOH X 26 216 26 HOH HOH . R 7 HOH X 27 217 27 HOH HOH . R 7 HOH X 28 218 28 HOH HOH . R 7 HOH X 29 219 29 HOH HOH . R 7 HOH X 30 220 30 HOH HOH . R 7 HOH X 31 221 31 HOH HOH . R 7 HOH X 32 222 32 HOH HOH . R 7 HOH X 33 223 33 HOH HOH . R 7 HOH X 34 224 34 HOH HOH . R 7 HOH X 35 225 35 HOH HOH . R 7 HOH X 36 226 36 HOH HOH . R 7 HOH X 37 227 37 HOH HOH . R 7 HOH X 38 228 38 HOH HOH . R 7 HOH X 39 229 39 HOH HOH . R 7 HOH X 40 230 40 HOH HOH . R 7 HOH X 41 231 41 HOH HOH . R 7 HOH X 42 232 42 HOH HOH . R 7 HOH X 43 233 43 HOH HOH . R 7 HOH X 44 234 44 HOH HOH . R 7 HOH X 45 235 45 HOH HOH . R 7 HOH X 46 236 46 HOH HOH . R 7 HOH X 47 237 47 HOH HOH . R 7 HOH X 48 238 48 HOH HOH . R 7 HOH X 49 239 49 HOH HOH . R 7 HOH X 50 240 50 HOH HOH . R 7 HOH X 51 241 51 HOH HOH . R 7 HOH X 52 242 52 HOH HOH . R 7 HOH X 53 243 53 HOH HOH . R 7 HOH X 54 244 54 HOH HOH . R 7 HOH X 55 245 55 HOH HOH . R 7 HOH X 56 246 56 HOH HOH . R 7 HOH X 57 247 57 HOH HOH . R 7 HOH X 58 248 58 HOH HOH . R 7 HOH X 59 249 59 HOH HOH . R 7 HOH X 60 250 60 HOH HOH . R 7 HOH X 61 251 61 HOH HOH . R 7 HOH X 62 252 62 HOH HOH . R 7 HOH X 63 253 63 HOH HOH . R 7 HOH X 64 254 64 HOH HOH . R 7 HOH X 65 255 65 HOH HOH . R 7 HOH X 66 256 66 HOH HOH . R 7 HOH X 67 257 67 HOH HOH . R 7 HOH X 68 258 68 HOH HOH . R 7 HOH X 69 259 69 HOH HOH . R 7 HOH X 70 260 70 HOH HOH . R 7 HOH X 71 261 71 HOH HOH . R 7 HOH X 72 262 72 HOH HOH . R 7 HOH X 73 263 73 HOH HOH . R 7 HOH X 74 264 74 HOH HOH . R 7 HOH X 75 265 75 HOH HOH . R 7 HOH X 76 266 76 HOH HOH . R 7 HOH X 77 267 77 HOH HOH . R 7 HOH X 78 268 78 HOH HOH . R 7 HOH X 79 269 79 HOH HOH . R 7 HOH X 80 270 80 HOH HOH . R 7 HOH X 81 271 81 HOH HOH . R 7 HOH X 82 272 82 HOH HOH . R 7 HOH X 83 273 83 HOH HOH . R 7 HOH X 84 274 84 HOH HOH . R 7 HOH X 85 275 85 HOH HOH . R 7 HOH X 86 276 86 HOH HOH . R 7 HOH X 87 277 87 HOH HOH . R 7 HOH X 88 278 88 HOH HOH . R 7 HOH X 89 279 89 HOH HOH . R 7 HOH X 90 280 90 HOH HOH . R 7 HOH X 91 281 91 HOH HOH . R 7 HOH X 92 282 92 HOH HOH . R 7 HOH X 93 283 93 HOH HOH . R 7 HOH X 94 284 94 HOH HOH . R 7 HOH X 95 285 95 HOH HOH . R 7 HOH X 96 286 96 HOH HOH . R 7 HOH X 97 287 97 HOH HOH . R 7 HOH X 98 288 98 HOH HOH . R 7 HOH X 99 289 99 HOH HOH . R 7 HOH X 100 290 100 HOH HOH . R 7 HOH X 101 291 101 HOH HOH . R 7 HOH X 102 292 102 HOH HOH . R 7 HOH X 103 293 103 HOH HOH . R 7 HOH X 104 294 104 HOH HOH . R 7 HOH X 105 295 105 HOH HOH . R 7 HOH X 106 296 106 HOH HOH . R 7 HOH X 107 297 107 HOH HOH . R 7 HOH X 108 298 108 HOH HOH . R 7 HOH X 109 299 109 HOH HOH . R 7 HOH X 110 300 110 HOH HOH . R 7 HOH X 111 301 111 HOH HOH . R 7 HOH X 112 302 112 HOH HOH . R 7 HOH X 113 303 113 HOH HOH . R 7 HOH X 114 304 114 HOH HOH . R 7 HOH X 115 305 115 HOH HOH . R 7 HOH X 116 306 116 HOH HOH . R 7 HOH X 117 307 117 HOH HOH . R 7 HOH X 118 308 118 HOH HOH . R 7 HOH X 119 309 119 HOH HOH . R 7 HOH X 120 310 120 HOH HOH . R 7 HOH X 121 311 121 HOH HOH . R 7 HOH X 122 312 122 HOH HOH . R 7 HOH X 123 313 123 HOH HOH . R 7 HOH X 124 314 124 HOH HOH . R 7 HOH X 125 315 125 HOH HOH . R 7 HOH X 126 316 126 HOH HOH . R 7 HOH X 127 317 127 HOH HOH . R 7 HOH X 128 318 128 HOH HOH . R 7 HOH X 129 319 129 HOH HOH . R 7 HOH X 130 320 130 HOH HOH . R 7 HOH X 131 321 131 HOH HOH . R 7 HOH X 132 322 132 HOH HOH . R 7 HOH X 133 323 133 HOH HOH . R 7 HOH X 134 324 134 HOH HOH . R 7 HOH X 135 325 135 HOH HOH . R 7 HOH X 136 326 136 HOH HOH . R 7 HOH X 137 327 137 HOH HOH . R 7 HOH X 138 328 138 HOH HOH . R 7 HOH X 139 329 139 HOH HOH . R 7 HOH X 140 330 140 HOH HOH . R 7 HOH X 141 331 141 HOH HOH . R 7 HOH X 142 332 142 HOH HOH . R 7 HOH X 143 333 143 HOH HOH . R 7 HOH X 144 334 144 HOH HOH . R 7 HOH X 145 335 145 HOH HOH . R 7 HOH X 146 336 146 HOH HOH . R 7 HOH X 147 337 147 HOH HOH . R 7 HOH X 148 338 148 HOH HOH . R 7 HOH X 149 339 149 HOH HOH . R 7 HOH X 150 340 150 HOH HOH . R 7 HOH X 151 341 151 HOH HOH . R 7 HOH X 152 342 152 HOH HOH . R 7 HOH X 153 343 153 HOH HOH . R 7 HOH X 154 344 154 HOH HOH . R 7 HOH X 155 345 155 HOH HOH . R 7 HOH X 156 346 156 HOH HOH . R 7 HOH X 157 347 157 HOH HOH . R 7 HOH X 158 348 158 HOH HOH . R 7 HOH X 159 349 159 HOH HOH . R 7 HOH X 160 350 160 HOH HOH . R 7 HOH X 161 351 161 HOH HOH . R 7 HOH X 162 352 162 HOH HOH . R 7 HOH X 163 353 163 HOH HOH . R 7 HOH X 164 354 164 HOH HOH . R 7 HOH X 165 355 165 HOH HOH . R 7 HOH X 166 356 166 HOH HOH . R 7 HOH X 167 357 167 HOH HOH . R 7 HOH X 168 358 168 HOH HOH . R 7 HOH X 169 359 169 HOH HOH . R 7 HOH X 170 360 170 HOH HOH . R 7 HOH X 171 361 171 HOH HOH . R 7 HOH X 172 362 172 HOH HOH . R 7 HOH X 173 363 173 HOH HOH . R 7 HOH X 174 364 174 HOH HOH . R 7 HOH X 175 365 175 HOH HOH . R 7 HOH X 176 366 176 HOH HOH . R 7 HOH X 177 367 177 HOH HOH . R 7 HOH X 178 368 178 HOH HOH . R 7 HOH X 179 369 179 HOH HOH . R 7 HOH X 180 370 180 HOH HOH . R 7 HOH X 181 371 181 HOH HOH . R 7 HOH X 182 372 182 HOH HOH . R 7 HOH X 183 373 183 HOH HOH . R 7 HOH X 184 374 184 HOH HOH . R 7 HOH X 185 375 185 HOH HOH . R 7 HOH X 186 376 186 HOH HOH . R 7 HOH X 187 377 187 HOH HOH . R 7 HOH X 188 378 188 HOH HOH . R 7 HOH X 189 379 189 HOH HOH . R 7 HOH X 190 380 190 HOH HOH . R 7 HOH X 191 381 191 HOH HOH . R 7 HOH X 192 382 192 HOH HOH . R 7 HOH X 193 383 193 HOH HOH . R 7 HOH X 194 384 194 HOH HOH . R 7 HOH X 195 385 195 HOH HOH . R 7 HOH X 196 386 196 HOH HOH . R 7 HOH X 197 387 197 HOH HOH . R 7 HOH X 198 388 198 HOH HOH . R 7 HOH X 199 389 199 HOH HOH . R 7 HOH X 200 390 200 HOH HOH . R 7 HOH X 201 391 201 HOH HOH . R 7 HOH X 202 392 202 HOH HOH . R 7 HOH X 203 393 203 HOH HOH . R 7 HOH X 204 394 204 HOH HOH . R 7 HOH X 205 395 205 HOH HOH . R 7 HOH X 206 396 206 HOH HOH . R 7 HOH X 207 397 207 HOH HOH . R 7 HOH X 208 398 208 HOH HOH . R 7 HOH X 209 399 209 HOH HOH . R 7 HOH X 210 400 210 HOH HOH . R 7 HOH X 211 401 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . Q 6 -7.639 -37.646 8.492 1 85.07 ? C1 EDO 190 X 1 HETATM 2 O O1 EDO . . . Q 6 -6.837 -38.799 8.212 1 84.82 ? O1 EDO 190 X 1 HETATM 3 C C2 EDO . . . Q 6 -8.687 -37.487 7.398 1 85.03 ? C2 EDO 190 X 1 HETATM 4 O O2 EDO . . . Q 6 -8.215 -36.54 6.435 1 85.21 ? O2 EDO 190 X 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #