data_2ZGB # _model_server_result.job_id ceLfgkzOvhYDXDhHNjRcJA _model_server_result.datetime_utc '2024-11-26 00:50:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zgb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1801}' # _entry.id 2ZGB # _exptl.entry_id 2ZGB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.871 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-leucyl-N-(3-chlorobenzyl)-L-prolinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.28 _cell.angle_gamma 90 _cell.entry_id 2ZGB _cell.length_a 69.76 _cell.length_b 71.37 _cell.length_c 72.57 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZGB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? covale ? covale1 C C GLU 9 I GLU 62 1_555 C N TYS 10 I TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C18 H26 Cl N3 O2' _chem_comp.formula_weight 351.871 _chem_comp.id 21U _chem_comp.mon_nstd_flag . _chem_comp.name D-leucyl-N-(3-chlorobenzyl)-L-prolinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C15 21U sing 1 n n C16 C12 21U sing 2 n n N2 C15 21U sing 3 n n C15 C14 21U sing 4 n n C14 O32 21U doub 5 n n C14 N1 21U sing 6 n n N1 C4 21U sing 7 n n N1 C1 21U sing 8 n n C4 C3 21U sing 9 n n C3 C2 21U sing 10 n n C2 C1 21U sing 11 n n C1 C7 21U sing 12 n n C7 N23 21U sing 13 n n C7 O22 21U doub 14 n n N23 C24 21U sing 15 n n C24 C25 21U sing 16 n n C25 C30 21U doub 17 n y C25 C26 21U sing 18 n y C30 C29 21U sing 19 n y C29 C28 21U doub 20 n y C29 CL21 21U sing 21 n n C28 C27 21U sing 22 n y C27 C26 21U doub 23 n y C12 C13 21U sing 24 n n C12 C18 21U sing 25 n n C16 H16 21U sing 26 n n C16 H16A 21U sing 27 n n N2 HN2 21U sing 28 n n N2 HN2A 21U sing 29 n n C15 H15 21U sing 30 n n C4 H4 21U sing 31 n n C4 H4A 21U sing 32 n n C3 H3 21U sing 33 n n C3 H3A 21U sing 34 n n C2 H2 21U sing 35 n n C2 H2A 21U sing 36 n n C1 H1 21U sing 37 n n N23 HN23 21U sing 38 n n C24 H24 21U sing 39 n n C24 H24A 21U sing 40 n n C30 H30 21U sing 41 n n C28 H28 21U sing 42 n n C27 H27 21U sing 43 n n C26 H26 21U sing 44 n n C12 H12 21U sing 45 n n C13 H13 21U sing 46 n n C13 H13A 21U sing 47 n n C13 H13B 21U sing 48 n n C18 H18 21U sing 49 n n C18 H18A 21U sing 50 n n C18 H18B 21U sing 51 n n # _atom_sites.entry_id 2ZGB _atom_sites.fract_transf_matrix[1][1] 0.014335 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0026 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA H 1 1802 1802 NA NA . E 4 NA H 1 1803 1803 NA NA . F 5 21U H 1 1801 1801 21U 21U . G 6 HOH L 1 2010 2010 HOH HOH . G 6 HOH L 2 2013 2013 HOH HOH . G 6 HOH L 3 2017 2017 HOH HOH . G 6 HOH L 4 2018 2018 HOH HOH . G 6 HOH L 5 2031 2031 HOH HOH . G 6 HOH L 6 2044 2044 HOH HOH . G 6 HOH L 7 2047 2047 HOH HOH . G 6 HOH L 8 2054 2054 HOH HOH . G 6 HOH L 9 2055 2055 HOH HOH . G 6 HOH L 10 2067 2067 HOH HOH . G 6 HOH L 11 2085 2085 HOH HOH . G 6 HOH L 12 2089 2089 HOH HOH . G 6 HOH L 13 2103 2103 HOH HOH . G 6 HOH L 14 2121 2121 HOH HOH . G 6 HOH L 15 2122 2122 HOH HOH . G 6 HOH L 16 2124 2124 HOH HOH . G 6 HOH L 17 2125 2125 HOH HOH . G 6 HOH L 18 2128 2128 HOH HOH . G 6 HOH L 19 2130 2130 HOH HOH . G 6 HOH L 20 2133 2133 HOH HOH . G 6 HOH L 21 2142 2142 HOH HOH . G 6 HOH L 22 2143 2143 HOH HOH . G 6 HOH L 23 2152 2152 HOH HOH . G 6 HOH L 24 2156 2156 HOH HOH . G 6 HOH L 25 2165 2165 HOH HOH . G 6 HOH L 26 2174 2174 HOH HOH . G 6 HOH L 27 2183 2183 HOH HOH . G 6 HOH L 28 2185 2185 HOH HOH . H 6 HOH H 1 2001 2001 HOH HOH . H 6 HOH H 2 2002 2002 HOH HOH . H 6 HOH H 3 2003 2003 HOH HOH . H 6 HOH H 4 2004 2004 HOH HOH . H 6 HOH H 5 2005 2005 HOH HOH . H 6 HOH H 6 2006 2006 HOH HOH . H 6 HOH H 7 2007 2007 HOH HOH . H 6 HOH H 8 2008 2008 HOH HOH . H 6 HOH H 9 2009 2009 HOH HOH . H 6 HOH H 10 2011 2011 HOH HOH . H 6 HOH H 11 2012 2012 HOH HOH . H 6 HOH H 12 2014 2014 HOH HOH . H 6 HOH H 13 2015 2015 HOH HOH . H 6 HOH H 14 2016 2016 HOH HOH . H 6 HOH H 15 2019 2019 HOH HOH . H 6 HOH H 16 2020 2020 HOH HOH . H 6 HOH H 17 2021 2021 HOH HOH . H 6 HOH H 18 2022 2022 HOH HOH . H 6 HOH H 19 2023 2023 HOH HOH . H 6 HOH H 20 2024 2024 HOH HOH . H 6 HOH H 21 2025 2025 HOH HOH . H 6 HOH H 22 2026 2026 HOH HOH . H 6 HOH H 23 2027 2027 HOH HOH . H 6 HOH H 24 2028 2028 HOH HOH . H 6 HOH H 25 2029 2029 HOH HOH . H 6 HOH H 26 2030 2030 HOH HOH . H 6 HOH H 27 2032 2032 HOH HOH . H 6 HOH H 28 2033 2033 HOH HOH . H 6 HOH H 29 2034 2034 HOH HOH . H 6 HOH H 30 2035 2035 HOH HOH . H 6 HOH H 31 2036 2036 HOH HOH . H 6 HOH H 32 2037 2037 HOH HOH . H 6 HOH H 33 2038 2038 HOH HOH . H 6 HOH H 34 2039 2039 HOH HOH . H 6 HOH H 35 2040 2040 HOH HOH . H 6 HOH H 36 2041 2041 HOH HOH . H 6 HOH H 37 2042 2042 HOH HOH . H 6 HOH H 38 2043 2043 HOH HOH . H 6 HOH H 39 2045 2045 HOH HOH . H 6 HOH H 40 2046 2046 HOH HOH . H 6 HOH H 41 2048 2048 HOH HOH . H 6 HOH H 42 2049 2049 HOH HOH . H 6 HOH H 43 2050 2050 HOH HOH . H 6 HOH H 44 2051 2051 HOH HOH . H 6 HOH H 45 2052 2052 HOH HOH . H 6 HOH H 46 2053 2053 HOH HOH . H 6 HOH H 47 2056 2056 HOH HOH . H 6 HOH H 48 2057 2057 HOH HOH . H 6 HOH H 49 2058 2058 HOH HOH . H 6 HOH H 50 2059 2059 HOH HOH . H 6 HOH H 51 2061 2061 HOH HOH . H 6 HOH H 52 2062 2062 HOH HOH . H 6 HOH H 53 2063 2063 HOH HOH . H 6 HOH H 54 2064 2064 HOH HOH . H 6 HOH H 55 2065 2065 HOH HOH . H 6 HOH H 56 2066 2066 HOH HOH . H 6 HOH H 57 2068 2068 HOH HOH . H 6 HOH H 58 2069 2069 HOH HOH . H 6 HOH H 59 2070 2070 HOH HOH . H 6 HOH H 60 2071 2071 HOH HOH . H 6 HOH H 61 2072 2072 HOH HOH . H 6 HOH H 62 2073 2073 HOH HOH . H 6 HOH H 63 2074 2074 HOH HOH . H 6 HOH H 64 2075 2075 HOH HOH . H 6 HOH H 65 2076 2076 HOH HOH . H 6 HOH H 66 2077 2077 HOH HOH . H 6 HOH H 67 2078 2078 HOH HOH . H 6 HOH H 68 2079 2079 HOH HOH . H 6 HOH H 69 2080 2080 HOH HOH . H 6 HOH H 70 2081 2081 HOH HOH . H 6 HOH H 71 2082 2082 HOH HOH . H 6 HOH H 72 2083 2083 HOH HOH . H 6 HOH H 73 2084 2084 HOH HOH . H 6 HOH H 74 2086 2086 HOH HOH . H 6 HOH H 75 2087 2087 HOH HOH . H 6 HOH H 76 2088 2088 HOH HOH . H 6 HOH H 77 2090 2090 HOH HOH . H 6 HOH H 78 2091 2091 HOH HOH . H 6 HOH H 79 2092 2092 HOH HOH . H 6 HOH H 80 2093 2093 HOH HOH . H 6 HOH H 81 2094 2094 HOH HOH . H 6 HOH H 82 2095 2095 HOH HOH . H 6 HOH H 83 2096 2096 HOH HOH . H 6 HOH H 84 2097 2097 HOH HOH . H 6 HOH H 85 2098 2098 HOH HOH . H 6 HOH H 86 2099 2099 HOH HOH . H 6 HOH H 87 2100 2100 HOH HOH . H 6 HOH H 88 2101 2101 HOH HOH . H 6 HOH H 89 2102 2102 HOH HOH . H 6 HOH H 90 2104 2104 HOH HOH . H 6 HOH H 91 2105 2105 HOH HOH . H 6 HOH H 92 2107 2107 HOH HOH . H 6 HOH H 93 2108 2108 HOH HOH . H 6 HOH H 94 2109 2109 HOH HOH . H 6 HOH H 95 2110 2110 HOH HOH . H 6 HOH H 96 2111 2111 HOH HOH . H 6 HOH H 97 2112 2112 HOH HOH . H 6 HOH H 98 2113 2113 HOH HOH . H 6 HOH H 99 2115 2115 HOH HOH . H 6 HOH H 100 2116 2116 HOH HOH . H 6 HOH H 101 2117 2117 HOH HOH . H 6 HOH H 102 2118 2118 HOH HOH . H 6 HOH H 103 2119 2119 HOH HOH . H 6 HOH H 104 2120 2120 HOH HOH . H 6 HOH H 105 2123 2123 HOH HOH . H 6 HOH H 106 2126 2126 HOH HOH . H 6 HOH H 107 2127 2127 HOH HOH . H 6 HOH H 108 2129 2129 HOH HOH . H 6 HOH H 109 2131 2131 HOH HOH . H 6 HOH H 110 2132 2132 HOH HOH . H 6 HOH H 111 2134 2134 HOH HOH . H 6 HOH H 112 2135 2135 HOH HOH . H 6 HOH H 113 2136 2136 HOH HOH . H 6 HOH H 114 2137 2137 HOH HOH . H 6 HOH H 115 2138 2138 HOH HOH . H 6 HOH H 116 2139 2139 HOH HOH . H 6 HOH H 117 2140 2140 HOH HOH . H 6 HOH H 118 2141 2141 HOH HOH . H 6 HOH H 119 2144 2144 HOH HOH . H 6 HOH H 120 2145 2145 HOH HOH . H 6 HOH H 121 2146 2146 HOH HOH . H 6 HOH H 122 2147 2147 HOH HOH . H 6 HOH H 123 2148 2148 HOH HOH . H 6 HOH H 124 2149 2149 HOH HOH . H 6 HOH H 125 2150 2150 HOH HOH . H 6 HOH H 126 2151 2151 HOH HOH . H 6 HOH H 127 2153 2153 HOH HOH . H 6 HOH H 128 2154 2154 HOH HOH . H 6 HOH H 129 2155 2155 HOH HOH . H 6 HOH H 130 2157 2157 HOH HOH . H 6 HOH H 131 2158 2158 HOH HOH . H 6 HOH H 132 2159 2159 HOH HOH . H 6 HOH H 133 2160 2160 HOH HOH . H 6 HOH H 134 2161 2161 HOH HOH . H 6 HOH H 135 2162 2162 HOH HOH . H 6 HOH H 136 2163 2163 HOH HOH . H 6 HOH H 137 2164 2164 HOH HOH . H 6 HOH H 138 2166 2166 HOH HOH . H 6 HOH H 139 2167 2167 HOH HOH . H 6 HOH H 140 2168 2168 HOH HOH . H 6 HOH H 141 2169 2169 HOH HOH . H 6 HOH H 142 2170 2170 HOH HOH . H 6 HOH H 143 2171 2171 HOH HOH . H 6 HOH H 144 2172 2172 HOH HOH . H 6 HOH H 145 2173 2173 HOH HOH . H 6 HOH H 146 2175 2175 HOH HOH . H 6 HOH H 147 2176 2176 HOH HOH . H 6 HOH H 148 2177 2177 HOH HOH . H 6 HOH H 149 2178 2178 HOH HOH . H 6 HOH H 150 2179 2179 HOH HOH . H 6 HOH H 151 2180 2180 HOH HOH . H 6 HOH H 152 2181 2181 HOH HOH . H 6 HOH H 153 2182 2182 HOH HOH . H 6 HOH H 154 2184 2184 HOH HOH . I 6 HOH I 1 2060 2060 HOH HOH . I 6 HOH I 2 2106 2106 HOH HOH . I 6 HOH I 3 2114 2114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 21U . . . F 5 16.952 -15.452 23.452 1 28.32 ? N2 21U 1801 H 1 HETATM 2 C C15 21U . . . F 5 18.156 -14.62 23.258 1 20.37 ? C15 21U 1801 H 1 HETATM 3 C C16 21U . . . F 5 18.841 -14.368 24.627 1 22.21 ? C16 21U 1801 H 1 HETATM 4 C C12 21U . . . F 5 20.115 -13.472 24.569 1 21.86 ? C12 21U 1801 H 1 HETATM 5 C C13 21U . . . F 5 21.358 -14.249 24.021 1 36.65 ? C13 21U 1801 H 1 HETATM 6 C C18 21U . . . F 5 20.491 -12.893 25.96 1 18.42 ? C18 21U 1801 H 1 HETATM 7 C C14 21U . . . F 5 17.72 -13.337 22.557 1 18.89 ? C14 21U 1801 H 1 HETATM 8 O O32 21U . . . F 5 16.727 -12.784 23.025 1 23.94 ? O32 21U 1801 H 1 HETATM 9 N N1 21U . . . F 5 18.337 -12.867 21.454 1 19.94 ? N1 21U 1801 H 1 HETATM 10 C C1 21U . . . F 5 17.876 -11.654 20.796 1 27.45 ? C1 21U 1801 H 1 HETATM 11 C C7 21U . . . F 5 16.396 -11.685 20.479 1 24.91 ? C7 21U 1801 H 1 HETATM 12 O O22 21U . . . F 5 15.909 -12.694 19.966 1 24.05 ? O22 21U 1801 H 1 HETATM 13 C C2 21U . . . F 5 18.65 -11.723 19.453 1 21.86 ? C2 21U 1801 H 1 HETATM 14 C C3 21U . . . F 5 19.843 -12.628 19.714 1 23.75 ? C3 21U 1801 H 1 HETATM 15 C C4 21U . . . F 5 19.41 -13.62 20.802 1 22.6 ? C4 21U 1801 H 1 HETATM 16 N N23 21U . . . F 5 15.664 -10.586 20.775 1 18.37 ? N23 21U 1801 H 1 HETATM 17 C C24 21U . . . F 5 14.265 -10.534 20.325 1 17.54 ? C24 21U 1801 H 1 HETATM 18 C C25 21U . . . F 5 13.305 -10.404 21.514 1 16.84 ? C25 21U 1801 H 1 HETATM 19 C C26 21U . . . F 5 12.409 -11.444 21.771 1 15.92 ? C26 21U 1801 H 1 HETATM 20 C C27 21U . . . F 5 11.526 -11.36 22.839 1 17.05 ? C27 21U 1801 H 1 HETATM 21 C C28 21U . . . F 5 11.506 -10.238 23.686 1 22.98 ? C28 21U 1801 H 1 HETATM 22 C C29 21U . . . F 5 12.402 -9.201 23.427 1 14.96 ? C29 21U 1801 H 1 HETATM 23 C C30 21U . . . F 5 13.292 -9.286 22.35 1 17.85 ? C30 21U 1801 H 1 HETATM 24 CL CL21 21U . . . F 5 12.407 -7.789 24.462 1 17.75 ? CL21 21U 1801 H 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #