data_2ZGD # _model_server_result.job_id fstWMeTZp6ubtpa3cv0pIQ _model_server_result.datetime_utc '2025-03-09 02:37:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zgd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":410}' # _entry.id 2ZGD # _exptl.entry_id 2ZGD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ZGD _cell.length_a 48.887 _cell.length_b 48.887 _cell.length_c 67.088 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZGD _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 22.362667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 83 A VAL 83 1_555 A N AHB 84 A AHB 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C AHB 84 A AHB 84 1_555 A N ALA 85 A ALA 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A OD1 ASP 23 A ASP 23 1_555 F CD CD . A CD 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc2 A OD2 ASP 23 A ASP 23 1_555 F CD CD . A CD 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc3 A OE2 GLU 30 A GLU 30 1_555 B CD CD . A CD 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc4 A OE1 GLN 36 A GLN 36 1_555 B CD CD . A CD 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc5 A OD2 ASP 38 A ASP 38 1_555 E CD CD . A CD 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc6 A OE1 GLU 39 A GLU 39 1_555 B CD CD . A CD 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc7 A OE2 GLU 39 A GLU 39 1_555 B CD CD . A CD 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc8 A OE1 GLU 107 A GLU 107 1_555 C CD CD . A CD 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc9 A OE2 GLU 107 A GLU 107 1_555 C CD CD . A CD 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc10 C CD CD . A CD 411 1_555 I O HOH . A HOH 1018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc11 C CD CD . A CD 411 1_555 I O HOH . A HOH 1019 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc12 D CD CD . A CD 412 1_555 I O HOH . A HOH 1020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc13 E CD CD . A CD 413 1_555 I O HOH . A HOH 1046 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2ZGD _atom_sites.fract_transf_matrix[1][1] 0.020455 _atom_sites.fract_transf_matrix[1][2] 0.01181 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02362 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014906 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 410 410 CD CD . C 2 CD A 1 411 411 CD CD . D 2 CD A 1 412 412 CD CD . E 2 CD A 1 413 413 CD CD . F 2 CD A 1 414 414 CD CD . G 3 CL A 1 415 415 CL CL . H 3 CL A 1 416 416 CL CL . I 4 HOH A 1 1001 1001 HOH HOH . I 4 HOH A 2 1002 1002 HOH HOH . I 4 HOH A 3 1003 1003 HOH HOH . I 4 HOH A 4 1004 1004 HOH HOH . I 4 HOH A 5 1005 1005 HOH HOH . I 4 HOH A 6 1006 1006 HOH HOH . I 4 HOH A 7 1007 1007 HOH HOH . I 4 HOH A 8 1008 1008 HOH HOH . I 4 HOH A 9 1009 1009 HOH HOH . I 4 HOH A 10 1010 1010 HOH HOH . I 4 HOH A 11 1011 1011 HOH HOH . I 4 HOH A 12 1012 1012 HOH HOH . I 4 HOH A 13 1013 1013 HOH HOH . I 4 HOH A 14 1014 1014 HOH HOH . I 4 HOH A 15 1015 1015 HOH HOH . I 4 HOH A 16 1016 1016 HOH HOH . I 4 HOH A 17 1017 1017 HOH HOH . I 4 HOH A 18 1018 1018 HOH HOH . I 4 HOH A 19 1019 1019 HOH HOH . I 4 HOH A 20 1020 1020 HOH HOH . I 4 HOH A 21 1021 1021 HOH HOH . I 4 HOH A 22 1022 1022 HOH HOH . I 4 HOH A 23 1023 1023 HOH HOH . I 4 HOH A 24 1024 1024 HOH HOH . I 4 HOH A 25 1025 1025 HOH HOH . I 4 HOH A 26 1026 1026 HOH HOH . I 4 HOH A 27 1027 1027 HOH HOH . I 4 HOH A 28 1028 1028 HOH HOH . I 4 HOH A 29 1029 1029 HOH HOH . I 4 HOH A 30 1030 1030 HOH HOH . I 4 HOH A 31 1031 1031 HOH HOH . I 4 HOH A 32 1032 1032 HOH HOH . I 4 HOH A 33 1033 1033 HOH HOH . I 4 HOH A 34 1034 1034 HOH HOH . I 4 HOH A 35 1035 1035 HOH HOH . I 4 HOH A 36 1036 1036 HOH HOH . I 4 HOH A 37 1037 1037 HOH HOH . I 4 HOH A 38 1038 1038 HOH HOH . I 4 HOH A 39 1039 1039 HOH HOH . I 4 HOH A 40 1040 1040 HOH HOH . I 4 HOH A 41 1041 1041 HOH HOH . I 4 HOH A 42 1042 1042 HOH HOH . I 4 HOH A 43 1043 1043 HOH HOH . I 4 HOH A 44 1044 1044 HOH HOH . I 4 HOH A 45 1045 1045 HOH HOH . I 4 HOH A 46 1046 1046 HOH HOH . I 4 HOH A 47 1047 1047 HOH HOH . I 4 HOH A 48 1048 1048 HOH HOH . I 4 HOH A 49 1049 1049 HOH HOH . I 4 HOH A 50 1050 1050 HOH HOH . I 4 HOH A 51 1051 1051 HOH HOH . I 4 HOH A 52 1052 1052 HOH HOH . I 4 HOH A 53 1053 1053 HOH HOH . I 4 HOH A 54 1054 1054 HOH HOH . I 4 HOH A 55 1055 1055 HOH HOH . I 4 HOH A 56 1056 1056 HOH HOH . I 4 HOH A 57 1057 1057 HOH HOH . I 4 HOH A 58 1058 1058 HOH HOH . I 4 HOH A 59 1059 1059 HOH HOH . I 4 HOH A 60 1060 1060 HOH HOH . I 4 HOH A 61 1061 1061 HOH HOH . I 4 HOH A 62 1062 1062 HOH HOH . I 4 HOH A 63 1063 1063 HOH HOH . I 4 HOH A 64 1064 1064 HOH HOH . I 4 HOH A 65 1065 1065 HOH HOH . I 4 HOH A 66 1066 1066 HOH HOH . I 4 HOH A 67 1067 1067 HOH HOH . I 4 HOH A 68 1068 1068 HOH HOH . I 4 HOH A 69 1069 1069 HOH HOH . I 4 HOH A 70 1070 1070 HOH HOH . I 4 HOH A 71 1071 1071 HOH HOH . I 4 HOH A 72 1072 1072 HOH HOH . I 4 HOH A 73 1073 1073 HOH HOH . I 4 HOH A 74 1074 1074 HOH HOH . I 4 HOH A 75 1075 1075 HOH HOH . I 4 HOH A 76 1076 1076 HOH HOH . I 4 HOH A 77 1077 1077 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -13.936 _atom_site.Cartn_y 32.256 _atom_site.Cartn_z 1.363 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 12.86 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 410 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #