data_2ZHG # _model_server_result.job_id ajySGw-WAmjJIGRQq90BpQ _model_server_result.datetime_utc '2025-02-05 04:48:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zhg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":901}' # _entry.id 2ZHG # _exptl.entry_id 2ZHG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DIHYDROXY-1,4-DITHIOBUTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ZHG _cell.length_a 53.374 _cell.length_b 53.374 _cell.length_c 355.159 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZHG _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_554 -y,-x,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -59.193167 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 119 A CYS 119 1_555 C FE2 FES . A FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc2 B SG CYS 122 A CYS 122 1_555 C FE1 FES . A FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc3 B SG CYS 124 A CYS 124 1_555 C FE1 FES . A FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc4 B SG CYS 130 A CYS 130 1_555 C FE2 FES . A FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? hydrog WATSON-CRICK hydrog1 A N1 DG 1 B DG 1 1_555 A N3 DC 20 B DC 20 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 1 B DG 1 1_555 A O2 DC 20 B DC 20 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 1 B DG 1 1_555 A N4 DC 20 B DC 20 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DC 2 B DC 2 1_555 A N1 DG 19 B DG 19 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 DC 2 B DC 2 1_555 A O6 DG 19 B DG 19 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 DC 2 B DC 2 1_555 A N2 DG 19 B DG 19 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DC 3 B DC 3 1_555 A N1 DG 18 B DG 18 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 DC 3 B DC 3 1_555 A O6 DG 18 B DG 18 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 DC 3 B DC 3 1_555 A N2 DG 18 B DG 18 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N3 DT 4 B DT 4 1_555 A N1 DA 17 B DA 17 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O4 DT 4 B DT 4 1_555 A N6 DA 17 B DA 17 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 DC 5 B DC 5 1_555 A N1 DG 16 B DG 16 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N4 DC 5 B DC 5 1_555 A O6 DG 16 B DG 16 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O2 DC 5 B DC 5 1_555 A N2 DG 16 B DG 16 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 DA 6 B DA 6 1_555 A N3 DT 15 B DT 15 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N6 DA 6 B DA 6 1_555 A O4 DT 15 B DT 15 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N1 DA 7 B DA 7 1_555 A N3 DT 14 B DT 14 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N6 DA 7 B DA 7 1_555 A O4 DT 14 B DT 14 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N1 DG 8 B DG 8 1_555 A N3 DC 13 B DC 13 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N2 DG 8 B DG 8 1_555 A O2 DC 13 B DC 13 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O6 DG 8 B DG 8 1_555 A N4 DC 13 B DC 13 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N3 DT 9 B DT 9 1_555 A N1 DA 12 B DA 12 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O4 DT 9 B DT 9 1_555 A N6 DA 12 B DA 12 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog24 A N3 DT 10 B DT 10 1_555 A N1 DA 11 B DA 11 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog25 A N1 DA 11 B DA 11 1_555 A N3 DT 10 B DT 10 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N1 DA 12 B DA 12 1_555 A N3 DT 9 B DT 9 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N6 DA 12 B DA 12 1_555 A O4 DT 9 B DT 9 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N3 DC 13 B DC 13 1_555 A N1 DG 8 B DG 8 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N4 DC 13 B DC 13 1_555 A O6 DG 8 B DG 8 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A O2 DC 13 B DC 13 1_555 A N2 DG 8 B DG 8 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N3 DT 14 B DT 14 1_555 A N1 DA 7 B DA 7 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O4 DT 14 B DT 14 1_555 A N6 DA 7 B DA 7 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A N3 DT 15 B DT 15 1_555 A N1 DA 6 B DA 6 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A O4 DT 15 B DT 15 1_555 A N6 DA 6 B DA 6 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A N1 DG 16 B DG 16 1_555 A N3 DC 5 B DC 5 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A N2 DG 16 B DG 16 1_555 A O2 DC 5 B DC 5 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A O6 DG 16 B DG 16 1_555 A N4 DC 5 B DC 5 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A N1 DA 17 B DA 17 1_555 A N3 DT 4 B DT 4 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 A N6 DA 17 B DA 17 1_555 A O4 DT 4 B DT 4 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 A N1 DG 18 B DG 18 1_555 A N3 DC 3 B DC 3 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 A N2 DG 18 B DG 18 1_555 A O2 DC 3 B DC 3 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 A O6 DG 18 B DG 18 1_555 A N4 DC 3 B DC 3 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 A N1 DG 19 B DG 19 1_555 A N3 DC 2 B DC 2 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 A N2 DG 19 B DG 19 1_555 A O2 DC 2 B DC 2 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog45 A O6 DG 19 B DG 19 1_555 A N4 DC 2 B DC 2 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog46 A N3 DC 20 B DC 20 1_555 A N1 DG 1 B DG 1 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog47 A N4 DC 20 B DC 20 1_555 A O6 DG 1 B DG 1 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog48 A O2 DC 20 B DC 20 1_555 A N2 DG 1 B DG 1 10_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id DTT _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DIHYDROXY-1,4-DITHIOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,4-DITHIOTHREITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTT sing 232 n n S1 HS1 DTT sing 233 n n C1 C2 DTT sing 234 n n C1 H11 DTT sing 235 n n C1 H12 DTT sing 236 n n C2 O2 DTT sing 237 n n C2 C3 DTT sing 238 n n C2 H2 DTT sing 239 n n O2 HO2 DTT sing 240 n n C3 O3 DTT sing 241 n n C3 C4 DTT sing 242 n n C3 H3 DTT sing 243 n n O3 HO3 DTT sing 244 n n C4 S4 DTT sing 245 n n C4 H41 DTT sing 246 n n C4 H42 DTT sing 247 n n S4 HS2 DTT sing 248 n n # _atom_sites.entry_id 2ZHG _atom_sites.fract_transf_matrix[1][1] 0.018736 _atom_sites.fract_transf_matrix[1][2] 0.010817 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021634 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002816 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FES A 1 501 501 FES FES . D 4 DTT A 1 901 901 DTT DTT . E 5 GOL A 1 801 801 GOL GOL . F 6 HOH B 1 21 5 HOH HOH . F 6 HOH B 2 22 7 HOH HOH . F 6 HOH B 3 23 12 HOH HOH . F 6 HOH B 4 24 13 HOH HOH . F 6 HOH B 5 25 18 HOH HOH . F 6 HOH B 6 26 19 HOH HOH . F 6 HOH B 7 27 26 HOH HOH . F 6 HOH B 8 28 29 HOH HOH . F 6 HOH B 9 29 34 HOH HOH . F 6 HOH B 10 30 44 HOH HOH . F 6 HOH B 11 31 51 HOH HOH . G 6 HOH A 1 902 1 HOH HOH . G 6 HOH A 2 903 3 HOH HOH . G 6 HOH A 3 904 15 HOH HOH . G 6 HOH A 4 905 24 HOH HOH . G 6 HOH A 5 906 28 HOH HOH . G 6 HOH A 6 907 30 HOH HOH . G 6 HOH A 7 908 31 HOH HOH . G 6 HOH A 8 909 32 HOH HOH . G 6 HOH A 9 910 33 HOH HOH . G 6 HOH A 10 911 52 HOH HOH . G 6 HOH A 11 912 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTT . . . D 4 41.467 -27.725 -30.336 0.5 136.61 ? S1 DTT 901 A 1 HETATM 2 C C1 DTT . . . D 4 42.789 -26.91 -29.401 0.5 134.52 ? C1 DTT 901 A 1 HETATM 3 C C2 DTT . . . D 4 43.201 -25.621 -30.115 0.5 134.06 ? C2 DTT 901 A 1 HETATM 4 O O2 DTT . . . D 4 44.144 -25.927 -31.143 0.5 143.33 ? O2 DTT 901 A 1 HETATM 5 C C3 DTT . . . D 4 43.836 -24.661 -29.108 0.5 133.07 ? C3 DTT 901 A 1 HETATM 6 O O3 DTT . . . D 4 44.62 -25.404 -28.171 0.5 132.53 ? O3 DTT 901 A 1 HETATM 7 C C4 DTT . . . D 4 44.734 -23.668 -29.848 0.5 132.71 ? C4 DTT 901 A 1 HETATM 8 S S4 DTT . . . D 4 44.586 -22.03 -29.08 0.5 145.95 ? S4 DTT 901 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 669 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #