data_2ZHQ # _model_server_result.job_id Bf6bVPqzRfDcKuvLHUlCKA _model_server_result.datetime_utc '2024-11-29 14:16:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zhq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 2ZHQ # _exptl.entry_id 2ZHQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 378.467 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(4-carbamimidoylbenzyl)-1-(3-phenylpropanoyl)-L-prolinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.8 _cell.angle_gamma 90 _cell.entry_id 2ZHQ _cell.length_a 71.1 _cell.length_b 71.4 _cell.length_c 72.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZHQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? covale ? covale1 C C GLU 9 I GLU 62 1_555 C N TYS 10 I TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 C C TYS 10 I TYS 63 1_555 C N LEU 11 I LEU 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C22 H26 N4 O2' _chem_comp.formula_weight 378.467 _chem_comp.id 27U _chem_comp.mon_nstd_flag . _chem_comp.name N-(4-carbamimidoylbenzyl)-1-(3-phenylpropanoyl)-L-prolinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 27U sing 1 n n C1 C17 27U sing 2 n n C2 C3 27U sing 3 n n C3 O1 27U doub 4 n n C3 N1 27U sing 5 n n N1 C4 27U sing 6 n n N1 C7 27U sing 7 n n C4 C5 27U sing 8 n n C5 C6 27U sing 9 n n C6 C7 27U sing 10 n n C7 C8 27U sing 11 n n C8 N2 27U sing 12 n n C8 O2 27U doub 13 n n N2 C9 27U sing 14 n n C9 C10 27U sing 15 n n C10 C11 27U doub 16 n y C10 C15 27U sing 17 n y C11 C12 27U sing 18 n y C12 C13 27U doub 19 n y C13 C14 27U sing 20 n y C13 C16 27U sing 21 n n C14 C15 27U doub 22 n y C16 N3 27U doub 23 n n C16 N4 27U sing 24 n n C17 C18 27U doub 25 n y C17 C22 27U sing 26 n y C18 C19 27U sing 27 n y C19 C20 27U doub 28 n y C20 C21 27U sing 29 n y C21 C22 27U doub 30 n y C1 H1 27U sing 31 n n C1 H1A 27U sing 32 n n C2 H2 27U sing 33 n n C2 H2A 27U sing 34 n n C4 H4 27U sing 35 n n C4 H4A 27U sing 36 n n C5 H5 27U sing 37 n n C5 H5A 27U sing 38 n n C6 H6 27U sing 39 n n C6 H6A 27U sing 40 n n C7 H7 27U sing 41 n n N2 HN2 27U sing 42 n n C9 H9 27U sing 43 n n C9 H9A 27U sing 44 n n C11 H11 27U sing 45 n n C12 H12 27U sing 46 n n C14 H14 27U sing 47 n n C15 H15 27U sing 48 n n N3 HN3 27U sing 49 n n N4 HN4 27U sing 50 n n N4 HN4A 27U sing 51 n n C18 H18 27U sing 52 n n C19 H19 27U sing 53 n n C20 H20 27U sing 54 n n C21 H21 27U sing 55 n n C22 H22 27U sing 56 n n # _atom_sites.entry_id 2ZHQ _atom_sites.fract_transf_matrix[1][1] 0.014073 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002695 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014013 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013971 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA H 1 601 601 NA NA . E 4 NA H 1 602 602 NA NA . F 5 27U H 1 501 501 27U 27U . G 6 HOH L 1 1002 1002 HOH HOH . G 6 HOH L 2 1010 1010 HOH HOH . G 6 HOH L 3 1014 1014 HOH HOH . G 6 HOH L 4 1020 1020 HOH HOH . G 6 HOH L 5 1025 1025 HOH HOH . G 6 HOH L 6 1036 1036 HOH HOH . G 6 HOH L 7 1043 1043 HOH HOH . G 6 HOH L 8 1056 1056 HOH HOH . G 6 HOH L 9 1060 1060 HOH HOH . G 6 HOH L 10 1064 1064 HOH HOH . G 6 HOH L 11 1069 1069 HOH HOH . G 6 HOH L 12 1073 1073 HOH HOH . G 6 HOH L 13 1078 1078 HOH HOH . G 6 HOH L 14 1099 1099 HOH HOH . G 6 HOH L 15 1102 1102 HOH HOH . G 6 HOH L 16 1111 1111 HOH HOH . G 6 HOH L 17 1116 1116 HOH HOH . G 6 HOH L 18 1125 1125 HOH HOH . G 6 HOH L 19 1126 1126 HOH HOH . G 6 HOH L 20 1134 1134 HOH HOH . G 6 HOH L 21 1137 1137 HOH HOH . H 6 HOH H 1 1001 1001 HOH HOH . H 6 HOH H 2 1003 1003 HOH HOH . H 6 HOH H 3 1004 1004 HOH HOH . H 6 HOH H 4 1005 1005 HOH HOH . H 6 HOH H 5 1006 1006 HOH HOH . H 6 HOH H 6 1007 1007 HOH HOH . H 6 HOH H 7 1008 1008 HOH HOH . H 6 HOH H 8 1009 1009 HOH HOH . H 6 HOH H 9 1011 1011 HOH HOH . H 6 HOH H 10 1012 1012 HOH HOH . H 6 HOH H 11 1013 1013 HOH HOH . H 6 HOH H 12 1015 1015 HOH HOH . H 6 HOH H 13 1016 1016 HOH HOH . H 6 HOH H 14 1017 1017 HOH HOH . H 6 HOH H 15 1018 1018 HOH HOH . H 6 HOH H 16 1019 1019 HOH HOH . H 6 HOH H 17 1021 1021 HOH HOH . H 6 HOH H 18 1022 1022 HOH HOH . H 6 HOH H 19 1023 1023 HOH HOH . H 6 HOH H 20 1024 1024 HOH HOH . H 6 HOH H 21 1026 1026 HOH HOH . H 6 HOH H 22 1027 1027 HOH HOH . H 6 HOH H 23 1028 1028 HOH HOH . H 6 HOH H 24 1029 1029 HOH HOH . H 6 HOH H 25 1030 1030 HOH HOH . H 6 HOH H 26 1031 1031 HOH HOH . H 6 HOH H 27 1032 1032 HOH HOH . H 6 HOH H 28 1033 1033 HOH HOH . H 6 HOH H 29 1034 1034 HOH HOH . H 6 HOH H 30 1035 1035 HOH HOH . H 6 HOH H 31 1037 1037 HOH HOH . H 6 HOH H 32 1038 1038 HOH HOH . H 6 HOH H 33 1039 1039 HOH HOH . H 6 HOH H 34 1040 1040 HOH HOH . H 6 HOH H 35 1041 1041 HOH HOH . H 6 HOH H 36 1042 1042 HOH HOH . H 6 HOH H 37 1044 1044 HOH HOH . H 6 HOH H 38 1045 1045 HOH HOH . H 6 HOH H 39 1046 1046 HOH HOH . H 6 HOH H 40 1047 1047 HOH HOH . H 6 HOH H 41 1048 1048 HOH HOH . H 6 HOH H 42 1049 1049 HOH HOH . H 6 HOH H 43 1050 1050 HOH HOH . H 6 HOH H 44 1051 1051 HOH HOH . H 6 HOH H 45 1052 1052 HOH HOH . H 6 HOH H 46 1053 1053 HOH HOH . H 6 HOH H 47 1054 1054 HOH HOH . H 6 HOH H 48 1055 1055 HOH HOH . H 6 HOH H 49 1057 1057 HOH HOH . H 6 HOH H 50 1058 1058 HOH HOH . H 6 HOH H 51 1059 1059 HOH HOH . H 6 HOH H 52 1061 1061 HOH HOH . H 6 HOH H 53 1062 1062 HOH HOH . H 6 HOH H 54 1063 1063 HOH HOH . H 6 HOH H 55 1065 1065 HOH HOH . H 6 HOH H 56 1066 1066 HOH HOH . H 6 HOH H 57 1067 1067 HOH HOH . H 6 HOH H 58 1068 1068 HOH HOH . H 6 HOH H 59 1070 1070 HOH HOH . H 6 HOH H 60 1071 1071 HOH HOH . H 6 HOH H 61 1072 1072 HOH HOH . H 6 HOH H 62 1074 1074 HOH HOH . H 6 HOH H 63 1075 1075 HOH HOH . H 6 HOH H 64 1076 1076 HOH HOH . H 6 HOH H 65 1077 1077 HOH HOH . H 6 HOH H 66 1079 1079 HOH HOH . H 6 HOH H 67 1080 1080 HOH HOH . H 6 HOH H 68 1081 1081 HOH HOH . H 6 HOH H 69 1082 1082 HOH HOH . H 6 HOH H 70 1083 1083 HOH HOH . H 6 HOH H 71 1084 1084 HOH HOH . H 6 HOH H 72 1085 1085 HOH HOH . H 6 HOH H 73 1086 1086 HOH HOH . H 6 HOH H 74 1087 1087 HOH HOH . H 6 HOH H 75 1088 1088 HOH HOH . H 6 HOH H 76 1089 1089 HOH HOH . H 6 HOH H 77 1090 1090 HOH HOH . H 6 HOH H 78 1091 1091 HOH HOH . H 6 HOH H 79 1092 1092 HOH HOH . H 6 HOH H 80 1093 1093 HOH HOH . H 6 HOH H 81 1094 1094 HOH HOH . H 6 HOH H 82 1095 1095 HOH HOH . H 6 HOH H 83 1096 1096 HOH HOH . H 6 HOH H 84 1097 1097 HOH HOH . H 6 HOH H 85 1098 1098 HOH HOH . H 6 HOH H 86 1101 1101 HOH HOH . H 6 HOH H 87 1103 1103 HOH HOH . H 6 HOH H 88 1104 1104 HOH HOH . H 6 HOH H 89 1105 1105 HOH HOH . H 6 HOH H 90 1106 1106 HOH HOH . H 6 HOH H 91 1107 1107 HOH HOH . H 6 HOH H 92 1108 1108 HOH HOH . H 6 HOH H 93 1109 1109 HOH HOH . H 6 HOH H 94 1110 1110 HOH HOH . H 6 HOH H 95 1112 1112 HOH HOH . H 6 HOH H 96 1113 1113 HOH HOH . H 6 HOH H 97 1114 1114 HOH HOH . H 6 HOH H 98 1115 1115 HOH HOH . H 6 HOH H 99 1117 1117 HOH HOH . H 6 HOH H 100 1118 1118 HOH HOH . H 6 HOH H 101 1119 1119 HOH HOH . H 6 HOH H 102 1121 1121 HOH HOH . H 6 HOH H 103 1123 1123 HOH HOH . H 6 HOH H 104 1124 1124 HOH HOH . H 6 HOH H 105 1127 1127 HOH HOH . H 6 HOH H 106 1128 1128 HOH HOH . H 6 HOH H 107 1129 1129 HOH HOH . H 6 HOH H 108 1130 1130 HOH HOH . H 6 HOH H 109 1131 1131 HOH HOH . H 6 HOH H 110 1132 1132 HOH HOH . H 6 HOH H 111 1133 1133 HOH HOH . H 6 HOH H 112 1135 1135 HOH HOH . H 6 HOH H 113 1136 1136 HOH HOH . H 6 HOH H 114 1138 1138 HOH HOH . H 6 HOH H 115 1139 1139 HOH HOH . H 6 HOH H 116 1140 1140 HOH HOH . H 6 HOH H 117 1141 1141 HOH HOH . H 6 HOH H 118 1142 1142 HOH HOH . H 6 HOH H 119 1143 1143 HOH HOH . H 6 HOH H 120 1144 1144 HOH HOH . H 6 HOH H 121 1145 1145 HOH HOH . H 6 HOH H 122 1146 1146 HOH HOH . H 6 HOH H 123 1147 1147 HOH HOH . H 6 HOH H 124 1148 1148 HOH HOH . H 6 HOH H 125 1149 1149 HOH HOH . H 6 HOH H 126 1150 1150 HOH HOH . H 6 HOH H 127 1151 1151 HOH HOH . H 6 HOH H 128 1152 1152 HOH HOH . H 6 HOH H 129 1153 1153 HOH HOH . H 6 HOH H 130 1154 1154 HOH HOH . I 6 HOH I 1 1100 1100 HOH HOH . I 6 HOH I 2 1120 1120 HOH HOH . I 6 HOH I 3 1122 1122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 27U . . . F 5 17.778 -13.976 22.711 1 12.8 ? C3 27U 501 H 1 HETATM 2 O O1 27U . . . F 5 16.879 -13.243 23.084 1 19.03 ? O1 27U 501 H 1 HETATM 3 C C2 27U . . . F 5 17.864 -15.354 23.324 1 15.91 ? C2 27U 501 H 1 HETATM 4 C C1 27U . . . F 5 18.177 -15.307 24.834 1 23.74 ? C1 27U 501 H 1 HETATM 5 C C17 27U . . . F 5 19.585 -14.742 25.078 1 31.16 ? C17 27U 501 H 1 HETATM 6 C C18 27U . . . F 5 20.716 -15.404 24.584 1 36.96 ? C18 27U 501 H 1 HETATM 7 C C19 27U . . . F 5 21.993 -14.835 24.666 1 24.49 ? C19 27U 501 H 1 HETATM 8 C C20 27U . . . F 5 22.155 -13.583 25.251 1 17.28 ? C20 27U 501 H 1 HETATM 9 C C21 27U . . . F 5 21.031 -12.914 25.748 1 23.64 ? C21 27U 501 H 1 HETATM 10 C C22 27U . . . F 5 19.756 -13.481 25.665 1 24.7 ? C22 27U 501 H 1 HETATM 11 N N1 27U . . . F 5 18.67 -13.522 21.799 1 13.68 ? N1 27U 501 H 1 HETATM 12 C C7 27U . . . F 5 18.505 -12.181 21.243 1 15.66 ? C7 27U 501 H 1 HETATM 13 C C8 27U . . . F 5 17.159 -12.095 20.547 1 20.94 ? C8 27U 501 H 1 HETATM 14 O O2 27U . . . F 5 16.738 -13.124 20.033 1 11.87 ? O2 27U 501 H 1 HETATM 15 C C6 27U . . . F 5 19.644 -12.219 20.188 1 17.4 ? C6 27U 501 H 1 HETATM 16 C C5 27U . . . F 5 20.741 -13.017 20.944 1 19.59 ? C5 27U 501 H 1 HETATM 17 C C4 27U . . . F 5 19.936 -14.203 21.535 1 18.39 ? C4 27U 501 H 1 HETATM 18 N N2 27U . . . F 5 16.397 -10.992 20.696 1 15.93 ? N2 27U 501 H 1 HETATM 19 C C9 27U . . . F 5 15.109 -10.913 19.979 1 8.34 ? C9 27U 501 H 1 HETATM 20 C C10 27U . . . F 5 13.991 -10.887 21.034 1 12.47 ? C10 27U 501 H 1 HETATM 21 C C15 27U . . . F 5 13.543 -9.682 21.567 1 14.97 ? C15 27U 501 H 1 HETATM 22 C C14 27U . . . F 5 12.524 -9.646 22.528 1 13.92 ? C14 27U 501 H 1 HETATM 23 C C13 27U . . . F 5 11.939 -10.838 22.969 1 16.43 ? C13 27U 501 H 1 HETATM 24 C C16 27U . . . F 5 10.837 -10.798 24.012 1 27.58 ? C16 27U 501 H 1 HETATM 25 N N3 27U . . . F 5 10.548 -9.649 24.558 1 15.83 ? N3 27U 501 H 1 HETATM 26 N N4 27U . . . F 5 10.195 -11.885 24.355 1 11.12 ? N4 27U 501 H 1 HETATM 27 C C12 27U . . . F 5 12.389 -12.047 22.431 1 17.24 ? C12 27U 501 H 1 HETATM 28 C C11 27U . . . F 5 13.405 -12.077 21.474 1 16.17 ? C11 27U 501 H 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 28 #