data_2ZHW
#
_model_server_result.job_id            qZJNBZ1QIU3hJsp7Yo00Yw 
_model_server_result.datetime_utc      '2025-08-12 06:51:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2zhw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    2ZHW 
#
_exptl.entry_id    2ZHW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              399.53 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-cycloheptylglycyl-N-(4-carbamimidoylbenzyl)-L-prolinamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.1 
_cell.angle_gamma         90 
_cell.entry_id            2ZHW 
_cell.length_a            68.9 
_cell.length_b            71.5 
_cell.length_c            71.3 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZHW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
covale ? covale1 C C GLU 10 I GLU 62 1_555 C N TYS 11 I TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 C C TYS 11 I TYS 63 1_555 C N LEU 12 I LEU 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C22 H33 N5 O2' 
_chem_comp.formula_weight    399.53 
_chem_comp.id                12U 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-cycloheptylglycyl-N-(4-carbamimidoylbenzyl)-L-prolinamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (2S)-N-[(4-carbamimidoylphenyl)methyl]-1-[2-(cycloheptylamino)ethanoyl]pyrrolidine-2-carboxamide 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O22 C7 12U doub 1 n n 
C7 N23 12U sing 2 n n 
C7 C1 12U sing 3 n n 
N23 C24 12U sing 4 n n 
C24 C25 12U sing 5 n n 
C25 C26 12U doub 6 n y 
C25 C30 12U sing 7 n y 
C26 C27 12U sing 8 n y 
C27 C28 12U doub 9 n y 
C28 C9 12U sing 10 n n 
C28 C29 12U sing 11 n y 
C9 N10 12U doub 12 n n 
C9 N11 12U sing 13 n n 
C29 C30 12U doub 14 n y 
C1 C2 12U sing 15 n n 
C1 N1 12U sing 16 n n 
C2 C3 12U sing 17 n n 
C3 C4 12U sing 18 n n 
C4 N1 12U sing 19 n n 
N1 C14 12U sing 20 n n 
C14 O32 12U doub 21 n n 
C14 C5 12U sing 22 n n 
C5 N21 12U sing 23 n n 
N21 C49 12U sing 24 n n 
C49 C48 12U sing 25 n n 
C49 C50 12U sing 26 n n 
C48 C47 12U sing 27 n n 
C47 C46 12U sing 28 n n 
C46 C52 12U sing 29 n n 
C52 C51 12U sing 30 n n 
C51 C50 12U sing 31 n n 
N23 HN23 12U sing 32 n n 
C24 H24 12U sing 33 n n 
C24 H24A 12U sing 34 n n 
C26 H26 12U sing 35 n n 
C27 H27 12U sing 36 n n 
N10 HN10 12U sing 37 n n 
N11 HN11 12U sing 38 n n 
N11 HN1A 12U sing 39 n n 
C29 H29 12U sing 40 n n 
C30 H30 12U sing 41 n n 
C1 H1 12U sing 42 n n 
C2 H2 12U sing 43 n n 
C2 H2A 12U sing 44 n n 
C3 H3 12U sing 45 n n 
C3 H3A 12U sing 46 n n 
C4 H4 12U sing 47 n n 
C4 H4A 12U sing 48 n n 
C5 H5 12U sing 49 n n 
C5 H5A 12U sing 50 n n 
N21 HN21 12U sing 51 n n 
C49 H49 12U sing 52 n n 
C48 H48 12U sing 53 n n 
C48 H48A 12U sing 54 n n 
C47 H47 12U sing 55 n n 
C47 H47A 12U sing 56 n n 
C46 H46 12U sing 57 n n 
C46 H46A 12U sing 58 n n 
C52 H52 12U sing 59 n n 
C52 H52A 12U sing 60 n n 
C51 H51 12U sing 61 n n 
C51 H51A 12U sing 62 n n 
C50 H50 12U sing 63 n n 
C50 H50A 12U sing 64 n n 
#
_atom_sites.entry_id                     2ZHW 
_atom_sites.fract_transf_matrix[1][1]    0.014514 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002325 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013986 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014204 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NA H 1 601 601 NA NA . 
E 4 NA H 1 602 602 NA NA . 
F 5 12U H 1 501 501 12U 12U . 
G 6 HOH L 1 1006 1006 HOH HOH . 
G 6 HOH L 2 1018 1018 HOH HOH . 
G 6 HOH L 3 1024 1024 HOH HOH . 
G 6 HOH L 4 1027 1027 HOH HOH . 
G 6 HOH L 5 1044 1044 HOH HOH . 
G 6 HOH L 6 1053 1053 HOH HOH . 
G 6 HOH L 7 1058 1058 HOH HOH . 
G 6 HOH L 8 1061 1061 HOH HOH . 
G 6 HOH L 9 1073 1073 HOH HOH . 
G 6 HOH L 10 1083 1083 HOH HOH . 
H 6 HOH H 1 1001 1001 HOH HOH . 
H 6 HOH H 2 1002 1002 HOH HOH . 
H 6 HOH H 3 1003 1003 HOH HOH . 
H 6 HOH H 4 1004 1004 HOH HOH . 
H 6 HOH H 5 1005 1005 HOH HOH . 
H 6 HOH H 6 1007 1007 HOH HOH . 
H 6 HOH H 7 1008 1008 HOH HOH . 
H 6 HOH H 8 1009 1009 HOH HOH . 
H 6 HOH H 9 1010 1010 HOH HOH . 
H 6 HOH H 10 1011 1011 HOH HOH . 
H 6 HOH H 11 1012 1012 HOH HOH . 
H 6 HOH H 12 1013 1013 HOH HOH . 
H 6 HOH H 13 1014 1014 HOH HOH . 
H 6 HOH H 14 1015 1015 HOH HOH . 
H 6 HOH H 15 1016 1016 HOH HOH . 
H 6 HOH H 16 1017 1017 HOH HOH . 
H 6 HOH H 17 1019 1019 HOH HOH . 
H 6 HOH H 18 1020 1020 HOH HOH . 
H 6 HOH H 19 1021 1021 HOH HOH . 
H 6 HOH H 20 1022 1022 HOH HOH . 
H 6 HOH H 21 1023 1023 HOH HOH . 
H 6 HOH H 22 1025 1025 HOH HOH . 
H 6 HOH H 23 1026 1026 HOH HOH . 
H 6 HOH H 24 1028 1028 HOH HOH . 
H 6 HOH H 25 1029 1029 HOH HOH . 
H 6 HOH H 26 1030 1030 HOH HOH . 
H 6 HOH H 27 1031 1031 HOH HOH . 
H 6 HOH H 28 1032 1032 HOH HOH . 
H 6 HOH H 29 1033 1033 HOH HOH . 
H 6 HOH H 30 1034 1034 HOH HOH . 
H 6 HOH H 31 1035 1035 HOH HOH . 
H 6 HOH H 32 1036 1036 HOH HOH . 
H 6 HOH H 33 1037 1037 HOH HOH . 
H 6 HOH H 34 1038 1038 HOH HOH . 
H 6 HOH H 35 1039 1039 HOH HOH . 
H 6 HOH H 36 1040 1040 HOH HOH . 
H 6 HOH H 37 1041 1041 HOH HOH . 
H 6 HOH H 38 1042 1042 HOH HOH . 
H 6 HOH H 39 1043 1043 HOH HOH . 
H 6 HOH H 40 1045 1045 HOH HOH . 
H 6 HOH H 41 1046 1046 HOH HOH . 
H 6 HOH H 42 1047 1047 HOH HOH . 
H 6 HOH H 43 1048 1048 HOH HOH . 
H 6 HOH H 44 1049 1049 HOH HOH . 
H 6 HOH H 45 1050 1050 HOH HOH . 
H 6 HOH H 46 1051 1051 HOH HOH . 
H 6 HOH H 47 1052 1052 HOH HOH . 
H 6 HOH H 48 1054 1054 HOH HOH . 
H 6 HOH H 49 1055 1055 HOH HOH . 
H 6 HOH H 50 1056 1056 HOH HOH . 
H 6 HOH H 51 1057 1057 HOH HOH . 
H 6 HOH H 52 1059 1059 HOH HOH . 
H 6 HOH H 53 1060 1060 HOH HOH . 
H 6 HOH H 54 1062 1062 HOH HOH . 
H 6 HOH H 55 1063 1063 HOH HOH . 
H 6 HOH H 56 1064 1064 HOH HOH . 
H 6 HOH H 57 1065 1065 HOH HOH . 
H 6 HOH H 58 1067 1067 HOH HOH . 
H 6 HOH H 59 1068 1068 HOH HOH . 
H 6 HOH H 60 1069 1069 HOH HOH . 
H 6 HOH H 61 1071 1071 HOH HOH . 
H 6 HOH H 62 1072 1072 HOH HOH . 
H 6 HOH H 63 1074 1074 HOH HOH . 
H 6 HOH H 64 1075 1075 HOH HOH . 
H 6 HOH H 65 1076 1076 HOH HOH . 
H 6 HOH H 66 1077 1077 HOH HOH . 
H 6 HOH H 67 1078 1078 HOH HOH . 
H 6 HOH H 68 1079 1079 HOH HOH . 
H 6 HOH H 69 1080 1080 HOH HOH . 
H 6 HOH H 70 1081 1081 HOH HOH . 
H 6 HOH H 71 1082 1082 HOH HOH . 
H 6 HOH H 72 1084 1084 HOH HOH . 
H 6 HOH H 73 1085 1085 HOH HOH . 
H 6 HOH H 74 1086 1086 HOH HOH . 
H 6 HOH H 75 1087 1087 HOH HOH . 
H 6 HOH H 76 1088 1088 HOH HOH . 
H 6 HOH H 77 1089 1089 HOH HOH . 
H 6 HOH H 78 1090 1090 HOH HOH . 
H 6 HOH H 79 1091 1091 HOH HOH . 
H 6 HOH H 80 1092 1092 HOH HOH . 
H 6 HOH H 81 1093 1093 HOH HOH . 
H 6 HOH H 82 1094 1094 HOH HOH . 
H 6 HOH H 83 1095 1095 HOH HOH . 
H 6 HOH H 84 1096 1096 HOH HOH . 
H 6 HOH H 85 1097 1097 HOH HOH . 
H 6 HOH H 86 1098 1098 HOH HOH . 
H 6 HOH H 87 1099 1099 HOH HOH . 
H 6 HOH H 88 1100 1100 HOH HOH . 
H 6 HOH H 89 1101 1101 HOH HOH . 
I 6 HOH I 1 1066 1066 HOH HOH . 
I 6 HOH I 2 1070 1070 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C14 12U . . . F 5 18.144 -13.866 21.934 1 68.77 ? C14 12U 501 H 1 
HETATM 2 O O32 12U . . . F 5 17.434 -13.065 22.545 1 60.54 ? O32 12U 501 H 1 
HETATM 3 C C5 12U . . . F 5 18.09 -15.204 22.553 1 68.73 ? C5 12U 501 H 1 
HETATM 4 N N21 12U . . . F 5 17.242 -15.601 23.614 1 62.44 ? N21 12U 501 H 1 
HETATM 5 N N1 12U . . . F 5 18.777 -13.361 20.887 1 63.72 ? N1 12U 501 H 1 
HETATM 6 C C1 12U . . . F 5 18.178 -12.951 19.628 1 60.9 ? C1 12U 501 H 1 
HETATM 7 C C7 12U . . . F 5 16.834 -12.426 19.898 1 41.19 ? C7 12U 501 H 1 
HETATM 8 O O22 12U . . . F 5 15.856 -13.184 19.866 1 54.43 ? O22 12U 501 H 1 
HETATM 9 C C2 12U . . . F 5 19.076 -11.816 19.216 1 59.84 ? C2 12U 501 H 1 
HETATM 10 C C3 12U . . . F 5 20.487 -12.363 19.501 1 57 ? C3 12U 501 H 1 
HETATM 11 C C4 12U . . . F 5 20.254 -13.166 20.818 1 59.56 ? C4 12U 501 H 1 
HETATM 12 N N23 12U . . . F 5 16.541 -11.167 20.184 1 37.24 ? N23 12U 501 H 1 
HETATM 13 C C24 12U . . . F 5 15.302 -10.718 19.607 1 25.93 ? C24 12U 501 H 1 
HETATM 14 C C25 12U . . . F 5 14.265 -10.883 20.679 1 22.89 ? C25 12U 501 H 1 
HETATM 15 C C30 12U . . . F 5 13.812 -11.978 21.373 1 26.24 ? C30 12U 501 H 1 
HETATM 16 C C29 12U . . . F 5 12.803 -11.971 22.379 1 26.74 ? C29 12U 501 H 1 
HETATM 17 C C28 12U . . . F 5 12.122 -10.86 22.815 1 25.4 ? C28 12U 501 H 1 
HETATM 18 C C9 12U . . . F 5 11.04 -10.728 23.866 1 27.94 ? C9 12U 501 H 1 
HETATM 19 N N10 12U . . . F 5 10.365 -11.785 24.308 1 28.94 ? N10 12U 501 H 1 
HETATM 20 N N11 12U . . . F 5 10.77 -9.512 24.35 1 37.05 ? N11 12U 501 H 1 
HETATM 21 C C27 12U . . . F 5 12.575 -9.754 22.118 1 25.36 ? C27 12U 501 H 1 
HETATM 22 C C26 12U . . . F 5 13.575 -9.757 21.12 1 28.45 ? C26 12U 501 H 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           22 
#