data_2ZI2 # _model_server_result.job_id NqbsItyGy6_ewo4E3Wo9CQ _model_server_result.datetime_utc '2024-11-24 02:14:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zi2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":801}' # _entry.id 2ZI2 # _exptl.entry_id 2ZI2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 316.398 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-butanoyl-N-(4-carbamimidoylbenzyl)-L-prolinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.6 _cell.angle_gamma 90 _cell.entry_id 2ZI2 _cell.length_a 70.5 _cell.length_b 71.6 _cell.length_c 72.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZI2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? covale ? covale1 C C GLU 9 I GLU 62 1_555 C N TYS 10 I TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C17 H24 N4 O2' _chem_comp.formula_weight 316.398 _chem_comp.id 24U _chem_comp.mon_nstd_flag . _chem_comp.name 1-butanoyl-N-(4-carbamimidoylbenzyl)-L-prolinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 24U sing 1 n n C4 N1 24U sing 2 n n N1 C14 24U sing 3 n n C2 C1 24U sing 4 n n C7 C1 24U sing 5 n n C1 H1 24U sing 6 n n O22 C7 24U doub 7 n n C7 N23 24U sing 8 n n C24 N23 24U sing 9 n n N23 HN23 24U sing 10 n n C24 C25 24U sing 11 n n C24 H24 24U sing 12 n n C24 H24A 24U sing 13 n n C25 C30 24U doub 14 n y C25 C26 24U sing 15 n y C26 C27 24U doub 16 n y C26 H26 24U sing 17 n n C27 C28 24U sing 18 n y C27 H27 24U sing 19 n n C29 C28 24U doub 20 n y C28 C21 24U sing 21 n n C21 N47 24U doub 22 n n C21 N46 24U sing 23 n n N46 HN46 24U sing 24 n n N46 HN4A 24U sing 25 n n N47 HN47 24U sing 26 n n C30 C29 24U sing 27 n y C29 H29 24U sing 28 n n C30 H30 24U sing 29 n n C2 C3 24U sing 30 n n C2 H2 24U sing 31 n n C2 H2A 24U sing 32 n n C3 C4 24U sing 33 n n C3 H3 24U sing 34 n n C3 H3A 24U sing 35 n n C4 H4 24U sing 36 n n C4 H4A 24U sing 37 n n C14 O32 24U doub 38 n n C14 C15 24U sing 39 n n C15 C33 24U sing 40 n n C15 H15 24U sing 41 n n C15 H15A 24U sing 42 n n C33 C17 24U sing 43 n n C33 H33 24U sing 44 n n C33 H33A 24U sing 45 n n C17 H17 24U sing 46 n n C17 H17A 24U sing 47 n n C17 H17B 24U sing 48 n n # _atom_sites.entry_id 2ZI2 _atom_sites.fract_transf_matrix[1][1] 0.014183 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002647 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013976 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014017 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA H 1 701 701 NA NA . E 4 NA H 1 702 702 NA NA . F 5 24U H 1 801 801 24U 24U . G 6 BEN H 1 901 901 BEN BEN . H 7 HOH L 1 1006 1006 HOH HOH . H 7 HOH L 2 1009 1009 HOH HOH . H 7 HOH L 3 1012 1012 HOH HOH . H 7 HOH L 4 1019 1019 HOH HOH . H 7 HOH L 5 1020 1020 HOH HOH . H 7 HOH L 6 1036 1036 HOH HOH . H 7 HOH L 7 1044 1044 HOH HOH . H 7 HOH L 8 1070 1070 HOH HOH . H 7 HOH L 9 1072 1072 HOH HOH . H 7 HOH L 10 1081 1081 HOH HOH . H 7 HOH L 11 1088 1088 HOH HOH . H 7 HOH L 12 1089 1089 HOH HOH . H 7 HOH L 13 1098 1098 HOH HOH . H 7 HOH L 14 1128 1128 HOH HOH . H 7 HOH L 15 1136 1136 HOH HOH . H 7 HOH L 16 1139 1139 HOH HOH . H 7 HOH L 17 1141 1141 HOH HOH . H 7 HOH L 18 1148 1148 HOH HOH . H 7 HOH L 19 1151 1151 HOH HOH . H 7 HOH L 20 1157 1157 HOH HOH . H 7 HOH L 21 1158 1158 HOH HOH . H 7 HOH L 22 1159 1159 HOH HOH . H 7 HOH L 23 1166 1166 HOH HOH . H 7 HOH L 24 1173 1173 HOH HOH . I 7 HOH H 1 1001 1001 HOH HOH . I 7 HOH H 2 1002 1002 HOH HOH . I 7 HOH H 3 1003 1003 HOH HOH . I 7 HOH H 4 1004 1004 HOH HOH . I 7 HOH H 5 1005 1005 HOH HOH . I 7 HOH H 6 1007 1007 HOH HOH . I 7 HOH H 7 1008 1008 HOH HOH . I 7 HOH H 8 1010 1010 HOH HOH . I 7 HOH H 9 1011 1011 HOH HOH . I 7 HOH H 10 1013 1013 HOH HOH . I 7 HOH H 11 1014 1014 HOH HOH . I 7 HOH H 12 1015 1015 HOH HOH . I 7 HOH H 13 1016 1016 HOH HOH . I 7 HOH H 14 1017 1017 HOH HOH . I 7 HOH H 15 1018 1018 HOH HOH . I 7 HOH H 16 1021 1021 HOH HOH . I 7 HOH H 17 1022 1022 HOH HOH . I 7 HOH H 18 1023 1023 HOH HOH . I 7 HOH H 19 1024 1024 HOH HOH . I 7 HOH H 20 1025 1025 HOH HOH . I 7 HOH H 21 1026 1026 HOH HOH . I 7 HOH H 22 1027 1027 HOH HOH . I 7 HOH H 23 1028 1028 HOH HOH . I 7 HOH H 24 1029 1029 HOH HOH . I 7 HOH H 25 1030 1030 HOH HOH . I 7 HOH H 26 1031 1031 HOH HOH . I 7 HOH H 27 1032 1032 HOH HOH . I 7 HOH H 28 1033 1033 HOH HOH . I 7 HOH H 29 1034 1034 HOH HOH . I 7 HOH H 30 1035 1035 HOH HOH . I 7 HOH H 31 1037 1037 HOH HOH . I 7 HOH H 32 1038 1038 HOH HOH . I 7 HOH H 33 1039 1039 HOH HOH . I 7 HOH H 34 1040 1040 HOH HOH . I 7 HOH H 35 1041 1041 HOH HOH . I 7 HOH H 36 1042 1042 HOH HOH . I 7 HOH H 37 1043 1043 HOH HOH . I 7 HOH H 38 1045 1045 HOH HOH . I 7 HOH H 39 1046 1046 HOH HOH . I 7 HOH H 40 1047 1047 HOH HOH . I 7 HOH H 41 1048 1048 HOH HOH . I 7 HOH H 42 1049 1049 HOH HOH . I 7 HOH H 43 1050 1050 HOH HOH . I 7 HOH H 44 1051 1051 HOH HOH . I 7 HOH H 45 1052 1052 HOH HOH . I 7 HOH H 46 1053 1053 HOH HOH . I 7 HOH H 47 1054 1054 HOH HOH . I 7 HOH H 48 1055 1055 HOH HOH . I 7 HOH H 49 1056 1056 HOH HOH . I 7 HOH H 50 1057 1057 HOH HOH . I 7 HOH H 51 1058 1058 HOH HOH . I 7 HOH H 52 1059 1059 HOH HOH . I 7 HOH H 53 1060 1060 HOH HOH . I 7 HOH H 54 1061 1061 HOH HOH . I 7 HOH H 55 1062 1062 HOH HOH . I 7 HOH H 56 1063 1063 HOH HOH . I 7 HOH H 57 1064 1064 HOH HOH . I 7 HOH H 58 1065 1065 HOH HOH . I 7 HOH H 59 1066 1066 HOH HOH . I 7 HOH H 60 1067 1067 HOH HOH . I 7 HOH H 61 1068 1068 HOH HOH . I 7 HOH H 62 1069 1069 HOH HOH . I 7 HOH H 63 1071 1071 HOH HOH . I 7 HOH H 64 1073 1073 HOH HOH . I 7 HOH H 65 1074 1074 HOH HOH . I 7 HOH H 66 1075 1075 HOH HOH . I 7 HOH H 67 1076 1076 HOH HOH . I 7 HOH H 68 1077 1077 HOH HOH . I 7 HOH H 69 1078 1078 HOH HOH . I 7 HOH H 70 1079 1079 HOH HOH . I 7 HOH H 71 1080 1080 HOH HOH . I 7 HOH H 72 1082 1082 HOH HOH . I 7 HOH H 73 1083 1083 HOH HOH . I 7 HOH H 74 1084 1084 HOH HOH . I 7 HOH H 75 1085 1085 HOH HOH . I 7 HOH H 76 1086 1086 HOH HOH . I 7 HOH H 77 1087 1087 HOH HOH . I 7 HOH H 78 1090 1090 HOH HOH . I 7 HOH H 79 1091 1091 HOH HOH . I 7 HOH H 80 1092 1092 HOH HOH . I 7 HOH H 81 1093 1093 HOH HOH . I 7 HOH H 82 1094 1094 HOH HOH . I 7 HOH H 83 1095 1095 HOH HOH . I 7 HOH H 84 1096 1096 HOH HOH . I 7 HOH H 85 1097 1097 HOH HOH . I 7 HOH H 86 1099 1099 HOH HOH . I 7 HOH H 87 1100 1100 HOH HOH . I 7 HOH H 88 1101 1101 HOH HOH . I 7 HOH H 89 1102 1102 HOH HOH . I 7 HOH H 90 1103 1103 HOH HOH . I 7 HOH H 91 1104 1104 HOH HOH . I 7 HOH H 92 1105 1105 HOH HOH . I 7 HOH H 93 1106 1106 HOH HOH . I 7 HOH H 94 1107 1107 HOH HOH . I 7 HOH H 95 1108 1108 HOH HOH . I 7 HOH H 96 1109 1109 HOH HOH . I 7 HOH H 97 1110 1110 HOH HOH . I 7 HOH H 98 1111 1111 HOH HOH . I 7 HOH H 99 1112 1112 HOH HOH . I 7 HOH H 100 1113 1113 HOH HOH . I 7 HOH H 101 1114 1114 HOH HOH . I 7 HOH H 102 1115 1115 HOH HOH . I 7 HOH H 103 1116 1116 HOH HOH . I 7 HOH H 104 1117 1117 HOH HOH . I 7 HOH H 105 1118 1118 HOH HOH . I 7 HOH H 106 1119 1119 HOH HOH . I 7 HOH H 107 1120 1120 HOH HOH . I 7 HOH H 108 1121 1121 HOH HOH . I 7 HOH H 109 1122 1122 HOH HOH . I 7 HOH H 110 1123 1123 HOH HOH . I 7 HOH H 111 1124 1124 HOH HOH . I 7 HOH H 112 1125 1125 HOH HOH . I 7 HOH H 113 1126 1126 HOH HOH . I 7 HOH H 114 1127 1127 HOH HOH . I 7 HOH H 115 1129 1129 HOH HOH . I 7 HOH H 116 1130 1130 HOH HOH . I 7 HOH H 117 1131 1131 HOH HOH . I 7 HOH H 118 1132 1132 HOH HOH . I 7 HOH H 119 1134 1134 HOH HOH . I 7 HOH H 120 1135 1135 HOH HOH . I 7 HOH H 121 1137 1137 HOH HOH . I 7 HOH H 122 1138 1138 HOH HOH . I 7 HOH H 123 1140 1140 HOH HOH . I 7 HOH H 124 1142 1142 HOH HOH . I 7 HOH H 125 1143 1143 HOH HOH . I 7 HOH H 126 1144 1144 HOH HOH . I 7 HOH H 127 1145 1145 HOH HOH . I 7 HOH H 128 1146 1146 HOH HOH . I 7 HOH H 129 1147 1147 HOH HOH . I 7 HOH H 130 1149 1149 HOH HOH . I 7 HOH H 131 1150 1150 HOH HOH . I 7 HOH H 132 1152 1152 HOH HOH . I 7 HOH H 133 1153 1153 HOH HOH . I 7 HOH H 134 1155 1155 HOH HOH . I 7 HOH H 135 1156 1156 HOH HOH . I 7 HOH H 136 1160 1160 HOH HOH . I 7 HOH H 137 1161 1161 HOH HOH . I 7 HOH H 138 1162 1162 HOH HOH . I 7 HOH H 139 1163 1163 HOH HOH . I 7 HOH H 140 1164 1164 HOH HOH . I 7 HOH H 141 1165 1165 HOH HOH . I 7 HOH H 142 1167 1167 HOH HOH . I 7 HOH H 143 1168 1168 HOH HOH . I 7 HOH H 144 1169 1169 HOH HOH . I 7 HOH H 145 1170 1170 HOH HOH . I 7 HOH H 146 1171 1171 HOH HOH . I 7 HOH H 147 1172 1172 HOH HOH . I 7 HOH H 148 1174 1174 HOH HOH . I 7 HOH H 149 1175 1175 HOH HOH . I 7 HOH H 150 1176 1176 HOH HOH . I 7 HOH H 151 1177 1177 HOH HOH . I 7 HOH H 152 1178 1178 HOH HOH . I 7 HOH H 153 1179 1179 HOH HOH . I 7 HOH H 154 1180 1180 HOH HOH . I 7 HOH H 155 1181 1181 HOH HOH . I 7 HOH H 156 1182 1182 HOH HOH . I 7 HOH H 157 1183 1183 HOH HOH . I 7 HOH H 158 1184 1184 HOH HOH . I 7 HOH H 159 1185 1185 HOH HOH . I 7 HOH H 160 1186 1186 HOH HOH . I 7 HOH H 161 1187 1187 HOH HOH . I 7 HOH H 162 1188 1188 HOH HOH . I 7 HOH H 163 1189 1189 HOH HOH . I 7 HOH H 164 1190 1190 HOH HOH . I 7 HOH H 165 1191 1191 HOH HOH . I 7 HOH H 166 1192 1192 HOH HOH . J 7 HOH I 1 1133 1133 HOH HOH . J 7 HOH I 2 1154 1154 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C17 24U . . . F 5 18.855 -14.333 25.243 1 51.13 ? C17 24U 801 H 1 HETATM 2 C C33 24U . . . F 5 17.629 -15.139 24.73 1 33.95 ? C33 24U 801 H 1 HETATM 3 C C15 24U . . . F 5 17.622 -15.162 23.17 1 31.86 ? C15 24U 801 H 1 HETATM 4 C C14 24U . . . F 5 17.571 -13.729 22.654 1 24.27 ? C14 24U 801 H 1 HETATM 5 O O32 24U . . . F 5 16.588 -13.089 23.025 1 27.46 ? O32 24U 801 H 1 HETATM 6 N N1 24U . . . F 5 18.55 -13.243 21.85 1 20.41 ? N1 24U 801 H 1 HETATM 7 C C1 24U . . . F 5 18.387 -11.957 21.174 1 17.42 ? C1 24U 801 H 1 HETATM 8 C C7 24U . . . F 5 17.031 -11.997 20.501 1 26.89 ? C7 24U 801 H 1 HETATM 9 O O22 24U . . . F 5 16.66 -13.048 19.991 1 20.03 ? O22 24U 801 H 1 HETATM 10 C C2 24U . . . F 5 19.502 -12.024 20.087 1 19.56 ? C2 24U 801 H 1 HETATM 11 C C3 24U . . . F 5 20.519 -13.01 20.72 1 27.6 ? C3 24U 801 H 1 HETATM 12 C C4 24U . . . F 5 19.584 -14.114 21.269 1 30.96 ? C4 24U 801 H 1 HETATM 13 N N23 24U . . . F 5 16.285 -10.867 20.519 1 20.17 ? N23 24U 801 H 1 HETATM 14 C C24 24U . . . F 5 14.982 -10.986 19.831 1 18.43 ? C24 24U 801 H 1 HETATM 15 C C25 24U . . . F 5 13.894 -10.937 20.912 1 23.49 ? C25 24U 801 H 1 HETATM 16 C C26 24U . . . F 5 13.403 -12.138 21.448 1 22.83 ? C26 24U 801 H 1 HETATM 17 C C27 24U . . . F 5 12.42 -12.095 22.425 1 22.71 ? C27 24U 801 H 1 HETATM 18 C C28 24U . . . F 5 11.923 -10.872 22.871 1 14.39 ? C28 24U 801 H 1 HETATM 19 C C21 24U . . . F 5 10.782 -10.861 24.007 1 20.58 ? C21 24U 801 H 1 HETATM 20 N N47 24U . . . F 5 10.167 -11.979 24.253 1 19.41 ? N47 24U 801 H 1 HETATM 21 N N46 24U . . . F 5 10.519 -9.745 24.632 1 15.49 ? N46 24U 801 H 1 HETATM 22 C C29 24U . . . F 5 12.404 -9.681 22.346 1 15.11 ? C29 24U 801 H 1 HETATM 23 C C30 24U . . . F 5 13.391 -9.718 21.365 1 17.57 ? C30 24U 801 H 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #