data_2ZI4
#
_model_server_result.job_id            KHG1W77-lf5MDg-vZ36K7w 
_model_server_result.datetime_utc      '2024-10-16 10:27:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2zi4 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    2ZI4 
#
_exptl.entry_id    2ZI4 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2ZI4 
_cell.length_a            79.73 
_cell.length_b            79.73 
_cell.length_c            93.53 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 2ZI4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 46.765 
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_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 54 A SER 35 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc2 A OE1 GLU 146 A GLU 127 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc3 D O1B ADP . A ADP 301 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc4 B MG MG . A MG 501 1_555 E O HOH . A HOH 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2ZI4 
_atom_sites.fract_transf_matrix[1][1]    0.012542 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012542 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010692 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 501 501 MG MG . 
C 3 3L1 A 1 401 401 3L1 LAD . 
D 4 ADP A 1 301 301 ADP ADP . 
E 5 HOH A 1 502 1 HOH HOH . 
E 5 HOH A 2 503 2 HOH HOH . 
E 5 HOH A 3 504 3 HOH HOH . 
E 5 HOH A 4 505 4 HOH HOH . 
E 5 HOH A 5 506 5 HOH HOH . 
E 5 HOH A 6 507 6 HOH HOH . 
E 5 HOH A 7 508 7 HOH HOH . 
E 5 HOH A 8 509 8 HOH HOH . 
E 5 HOH A 9 510 9 HOH HOH . 
E 5 HOH A 10 511 10 HOH HOH . 
E 5 HOH A 11 512 11 HOH HOH . 
E 5 HOH A 12 513 12 HOH HOH . 
E 5 HOH A 13 514 13 HOH HOH . 
E 5 HOH A 14 515 14 HOH HOH . 
E 5 HOH A 15 516 15 HOH HOH . 
E 5 HOH A 16 517 16 HOH HOH . 
E 5 HOH A 17 518 17 HOH HOH . 
E 5 HOH A 18 519 18 HOH HOH . 
E 5 HOH A 19 520 19 HOH HOH . 
E 5 HOH A 20 521 20 HOH HOH . 
E 5 HOH A 21 522 21 HOH HOH . 
E 5 HOH A 22 523 22 HOH HOH . 
E 5 HOH A 23 524 23 HOH HOH . 
E 5 HOH A 24 525 24 HOH HOH . 
E 5 HOH A 25 526 26 HOH HOH . 
E 5 HOH A 26 527 27 HOH HOH . 
E 5 HOH A 27 528 29 HOH HOH . 
E 5 HOH A 28 529 30 HOH HOH . 
E 5 HOH A 29 530 31 HOH HOH . 
E 5 HOH A 30 531 32 HOH HOH . 
E 5 HOH A 31 532 33 HOH HOH . 
E 5 HOH A 32 533 34 HOH HOH . 
E 5 HOH A 33 534 35 HOH HOH . 
E 5 HOH A 34 535 37 HOH HOH . 
E 5 HOH A 35 536 38 HOH HOH . 
E 5 HOH A 36 537 40 HOH HOH . 
E 5 HOH A 37 538 41 HOH HOH . 
E 5 HOH A 38 539 42 HOH HOH . 
E 5 HOH A 39 540 43 HOH HOH . 
E 5 HOH A 40 541 44 HOH HOH . 
E 5 HOH A 41 542 45 HOH HOH . 
E 5 HOH A 42 543 46 HOH HOH . 
E 5 HOH A 43 544 47 HOH HOH . 
E 5 HOH A 44 545 48 HOH HOH . 
E 5 HOH A 45 546 49 HOH HOH . 
E 5 HOH A 46 547 50 HOH HOH . 
E 5 HOH A 47 548 51 HOH HOH . 
E 5 HOH A 48 549 52 HOH HOH . 
E 5 HOH A 49 550 53 HOH HOH . 
E 5 HOH A 50 551 54 HOH HOH . 
E 5 HOH A 51 552 55 HOH HOH . 
E 5 HOH A 52 553 56 HOH HOH . 
E 5 HOH A 53 554 57 HOH HOH . 
E 5 HOH A 54 555 58 HOH HOH . 
E 5 HOH A 55 556 59 HOH HOH . 
E 5 HOH A 56 557 60 HOH HOH . 
E 5 HOH A 57 558 62 HOH HOH . 
E 5 HOH A 58 559 63 HOH HOH . 
E 5 HOH A 59 560 64 HOH HOH . 
E 5 HOH A 60 561 66 HOH HOH . 
E 5 HOH A 61 562 67 HOH HOH . 
E 5 HOH A 62 563 68 HOH HOH . 
E 5 HOH A 63 564 69 HOH HOH . 
E 5 HOH A 64 565 70 HOH HOH . 
E 5 HOH A 65 566 71 HOH HOH . 
E 5 HOH A 66 567 72 HOH HOH . 
E 5 HOH A 67 568 73 HOH HOH . 
E 5 HOH A 68 569 75 HOH HOH . 
E 5 HOH A 69 570 76 HOH HOH . 
E 5 HOH A 70 571 77 HOH HOH . 
E 5 HOH A 71 572 78 HOH HOH . 
E 5 HOH A 72 573 79 HOH HOH . 
E 5 HOH A 73 574 80 HOH HOH . 
E 5 HOH A 74 575 81 HOH HOH . 
E 5 HOH A 75 576 82 HOH HOH . 
E 5 HOH A 76 577 83 HOH HOH . 
E 5 HOH A 77 578 84 HOH HOH . 
E 5 HOH A 78 579 85 HOH HOH . 
E 5 HOH A 79 580 86 HOH HOH . 
E 5 HOH A 80 581 87 HOH HOH . 
E 5 HOH A 81 582 88 HOH HOH . 
E 5 HOH A 82 583 89 HOH HOH . 
E 5 HOH A 83 584 90 HOH HOH . 
E 5 HOH A 84 585 91 HOH HOH . 
E 5 HOH A 85 586 92 HOH HOH . 
E 5 HOH A 86 587 93 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               30.229 
_atom_site.Cartn_y               2.304 
_atom_site.Cartn_z               21.481 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        27.67 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
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_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
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