data_2ZI7
#
_model_server_result.job_id            D8izAjN1OXcv8_tjUrCG4A 
_model_server_result.datetime_utc      '2024-11-13 05:44:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2zi7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":503}' 
#
_entry.id    2ZI7 
#
_exptl.entry_id    2ZI7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              267.241 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-DEOXY-GUANOSINE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2ZI7 
_cell.length_a            43.8 
_cell.length_b            107.5 
_cell.length_c            110.4 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZI7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OE2 GLU 72 B GLU 53 1_555 C O5' GNG . B GNG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
covale ? covale2 B OE2 GLU 72 A GLU 53 1_555 E O5' GNG . A GNG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
#
_chem_comp.formula           'C10 H13 N5 O4' 
_chem_comp.formula_weight    267.241 
_chem_comp.id                GNG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "2'-DEOXY-GUANOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5' C5' GNG sing 129 n n 
O5' H5' GNG sing 130 n n 
C5' C4' GNG sing 131 n n 
C5' "H5'1" GNG sing 132 n n 
C5' "H5'2" GNG sing 133 n n 
C4' O4' GNG sing 134 n n 
C4' C3' GNG sing 135 n n 
C4' H4' GNG sing 136 n n 
O4' C1' GNG sing 137 n n 
C1' N9 GNG sing 138 n n 
C1' C2' GNG sing 139 n n 
C1' H1' GNG sing 140 n n 
N9 C8 GNG sing 141 n y 
N9 C4 GNG sing 142 n y 
C8 N7 GNG doub 143 n y 
C8 H8 GNG sing 144 n n 
N7 C5 GNG sing 145 n y 
C5 C4 GNG doub 146 n y 
C5 C6 GNG sing 147 n n 
C4 N3 GNG sing 148 n n 
N3 C2 GNG sing 149 n n 
N3 HN3 GNG sing 150 n n 
C2 N1 GNG doub 151 n n 
C2 N2 GNG sing 152 n n 
N1 C6 GNG sing 153 n n 
C6 O6 GNG doub 154 n n 
N2 HN21 GNG sing 155 n n 
N2 HN22 GNG sing 156 n n 
C2' C3' GNG sing 157 n n 
C2' "H2'1" GNG sing 158 n n 
C2' "H2'2" GNG sing 159 n n 
C3' O3' GNG sing 160 n n 
C3' H3' GNG sing 161 n n 
O3' H1 GNG sing 162 n n 
#
_atom_sites.entry_id                     2ZI7 
_atom_sites.fract_transf_matrix[1][1]    0.022831 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009302 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009058 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GNG B 1 503 503 GNG DGU . 
D 3 UDP B 1 301 301 UDP UDP . 
E 2 GNG A 1 502 502 GNG DGU . 
F 3 UDP A 1 301 301 UDP UDP . 
G 4 HOH B 1 504 3 HOH HOH . 
G 4 HOH B 2 505 4 HOH HOH . 
G 4 HOH B 3 506 5 HOH HOH . 
G 4 HOH B 4 507 7 HOH HOH . 
G 4 HOH B 5 508 8 HOH HOH . 
G 4 HOH B 6 509 12 HOH HOH . 
G 4 HOH B 7 510 14 HOH HOH . 
G 4 HOH B 8 511 15 HOH HOH . 
G 4 HOH B 9 512 16 HOH HOH . 
G 4 HOH B 10 513 26 HOH HOH . 
G 4 HOH B 11 514 27 HOH HOH . 
G 4 HOH B 12 515 28 HOH HOH . 
G 4 HOH B 13 516 37 HOH HOH . 
G 4 HOH B 14 517 38 HOH HOH . 
G 4 HOH B 15 518 39 HOH HOH . 
G 4 HOH B 16 519 41 HOH HOH . 
G 4 HOH B 17 520 42 HOH HOH . 
G 4 HOH B 18 521 46 HOH HOH . 
G 4 HOH B 19 522 49 HOH HOH . 
G 4 HOH B 20 523 50 HOH HOH . 
G 4 HOH B 21 524 52 HOH HOH . 
G 4 HOH B 22 525 53 HOH HOH . 
G 4 HOH B 23 526 57 HOH HOH . 
G 4 HOH B 24 527 58 HOH HOH . 
G 4 HOH B 25 528 59 HOH HOH . 
G 4 HOH B 26 529 61 HOH HOH . 
G 4 HOH B 27 530 62 HOH HOH . 
G 4 HOH B 28 531 65 HOH HOH . 
G 4 HOH B 29 532 67 HOH HOH . 
G 4 HOH B 30 533 68 HOH HOH . 
G 4 HOH B 31 534 69 HOH HOH . 
G 4 HOH B 32 535 71 HOH HOH . 
G 4 HOH B 33 536 73 HOH HOH . 
G 4 HOH B 34 537 76 HOH HOH . 
G 4 HOH B 35 538 79 HOH HOH . 
G 4 HOH B 36 539 86 HOH HOH . 
G 4 HOH B 37 540 87 HOH HOH . 
G 4 HOH B 38 541 88 HOH HOH . 
G 4 HOH B 39 542 92 HOH HOH . 
G 4 HOH B 40 543 93 HOH HOH . 
G 4 HOH B 41 544 94 HOH HOH . 
H 4 HOH A 1 503 1 HOH HOH . 
H 4 HOH A 2 504 2 HOH HOH . 
H 4 HOH A 3 505 6 HOH HOH . 
H 4 HOH A 4 506 9 HOH HOH . 
H 4 HOH A 5 507 10 HOH HOH . 
H 4 HOH A 6 508 11 HOH HOH . 
H 4 HOH A 7 509 13 HOH HOH . 
H 4 HOH A 8 510 17 HOH HOH . 
H 4 HOH A 9 511 18 HOH HOH . 
H 4 HOH A 10 512 19 HOH HOH . 
H 4 HOH A 11 513 20 HOH HOH . 
H 4 HOH A 12 514 21 HOH HOH . 
H 4 HOH A 13 515 22 HOH HOH . 
H 4 HOH A 14 516 23 HOH HOH . 
H 4 HOH A 15 517 24 HOH HOH . 
H 4 HOH A 16 518 25 HOH HOH . 
H 4 HOH A 17 519 29 HOH HOH . 
H 4 HOH A 18 520 30 HOH HOH . 
H 4 HOH A 19 521 31 HOH HOH . 
H 4 HOH A 20 522 32 HOH HOH . 
H 4 HOH A 21 523 33 HOH HOH . 
H 4 HOH A 22 524 35 HOH HOH . 
H 4 HOH A 23 525 36 HOH HOH . 
H 4 HOH A 24 526 40 HOH HOH . 
H 4 HOH A 25 527 43 HOH HOH . 
H 4 HOH A 26 528 44 HOH HOH . 
H 4 HOH A 27 529 45 HOH HOH . 
H 4 HOH A 28 530 47 HOH HOH . 
H 4 HOH A 29 531 48 HOH HOH . 
H 4 HOH A 30 532 51 HOH HOH . 
H 4 HOH A 31 533 54 HOH HOH . 
H 4 HOH A 32 534 55 HOH HOH . 
H 4 HOH A 33 535 56 HOH HOH . 
H 4 HOH A 34 536 63 HOH HOH . 
H 4 HOH A 35 537 64 HOH HOH . 
H 4 HOH A 36 538 66 HOH HOH . 
H 4 HOH A 37 539 70 HOH HOH . 
H 4 HOH A 38 540 74 HOH HOH . 
H 4 HOH A 39 541 75 HOH HOH . 
H 4 HOH A 40 542 84 HOH HOH . 
H 4 HOH A 41 543 85 HOH HOH . 
H 4 HOH A 42 544 89 HOH HOH . 
H 4 HOH A 43 545 90 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' GNG . . . C 2 2.028 -8.395 30.469 1 16.13 ? O5' GNG 503 B 1 
HETATM 2 C C5' GNG . . . C 2 3.142 -7.622 30.006 1 15.65 ? C5' GNG 503 B 1 
HETATM 3 C C4' GNG . . . C 2 2.684 -6.18 29.658 1 13.86 ? C4' GNG 503 B 1 
HETATM 4 O O4' GNG . . . C 2 2.106 -6.091 28.26 1 14.71 ? O4' GNG 503 B 1 
HETATM 5 C C1' GNG . . . C 2 0.676 -5.991 28.34 1 16.1 ? C1' GNG 503 B 1 
HETATM 6 N N9 GNG . . . C 2 -0.01 -6.998 27.507 1 15.62 ? N9 GNG 503 B 1 
HETATM 7 C C8 GNG . . . C 2 -0.007 -8.378 27.572 1 18.7 ? C8 GNG 503 B 1 
HETATM 8 N N7 GNG . . . C 2 -0.76 -8.96 26.668 1 19.91 ? N7 GNG 503 B 1 
HETATM 9 C C5 GNG . . . C 2 -1.268 -7.776 26.008 1 15.19 ? C5 GNG 503 B 1 
HETATM 10 C C4 GNG . . . C 2 -0.805 -6.629 26.501 1 16.66 ? C4 GNG 503 B 1 
HETATM 11 N N3 GNG . . . C 2 -1.094 -5.317 26.088 1 16.26 ? N3 GNG 503 B 1 
HETATM 12 C C2 GNG . . . C 2 -1.912 -5.272 25.014 1 17.04 ? C2 GNG 503 B 1 
HETATM 13 N N1 GNG . . . C 2 -2.412 -6.392 24.413 1 15.09 ? N1 GNG 503 B 1 
HETATM 14 C C6 GNG . . . C 2 -2.108 -7.72 24.865 1 15.11 ? C6 GNG 503 B 1 
HETATM 15 O O6 GNG . . . C 2 -2.588 -8.679 24.296 1 16.77 ? O6 GNG 503 B 1 
HETATM 16 N N2 GNG . . . C 2 -2.382 -4.136 24.423 1 17.48 ? N2 GNG 503 B 1 
HETATM 17 C C2' GNG . . . C 2 0.316 -6.007 29.794 1 15.23 ? C2' GNG 503 B 1 
HETATM 18 C C3' GNG . . . C 2 1.583 -5.548 30.471 1 18.3 ? C3' GNG 503 B 1 
HETATM 19 O O3' GNG . . . C 2 1.677 -4.103 30.314 1 14.03 ? O3' GNG 503 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           19 
#