data_2ZI9
#
_model_server_result.job_id            YNkyCy-72PVzuIIkV-3-4A 
_model_server_result.datetime_utc      '2024-11-13 05:30:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2zi9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    2ZI9 
#
_exptl.entry_id    2ZI9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2ZI9 
_cell.length_a            56.39 
_cell.length_b            132.71 
_cell.length_c            157.47 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZI9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     2ZI9 
_atom_sites.fract_transf_matrix[1][1]    0.017734 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007535 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00635 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADP A 1 301 301 ADP ADP . 
D 3 CL9 A 1 401 401 CL9 CLA . 
E 2 ADP B 1 301 301 ADP ADP . 
F 3 CL9 B 1 401 401 CL9 CLA . 
G 4 HOH A 1 402 8 HOH HOH . 
G 4 HOH A 2 403 10 HOH HOH . 
G 4 HOH A 3 404 12 HOH HOH . 
G 4 HOH A 4 405 13 HOH HOH . 
G 4 HOH A 5 406 14 HOH HOH . 
G 4 HOH A 6 407 15 HOH HOH . 
G 4 HOH A 7 408 16 HOH HOH . 
G 4 HOH A 8 409 17 HOH HOH . 
G 4 HOH A 9 410 18 HOH HOH . 
G 4 HOH A 10 411 19 HOH HOH . 
G 4 HOH A 11 412 20 HOH HOH . 
G 4 HOH A 12 413 21 HOH HOH . 
G 4 HOH A 13 414 31 HOH HOH . 
G 4 HOH A 14 415 32 HOH HOH . 
G 4 HOH A 15 416 40 HOH HOH . 
G 4 HOH A 16 417 41 HOH HOH . 
G 4 HOH A 17 418 45 HOH HOH . 
G 4 HOH A 18 419 48 HOH HOH . 
G 4 HOH A 19 420 60 HOH HOH . 
G 4 HOH A 20 421 65 HOH HOH . 
G 4 HOH A 21 422 66 HOH HOH . 
G 4 HOH A 22 423 67 HOH HOH . 
G 4 HOH A 23 424 68 HOH HOH . 
G 4 HOH A 24 425 76 HOH HOH . 
G 4 HOH A 25 426 77 HOH HOH . 
G 4 HOH A 26 427 80 HOH HOH . 
G 4 HOH A 27 428 82 HOH HOH . 
G 4 HOH A 28 429 83 HOH HOH . 
G 4 HOH A 29 430 89 HOH HOH . 
G 4 HOH A 30 431 90 HOH HOH . 
G 4 HOH A 31 432 93 HOH HOH . 
G 4 HOH A 32 433 97 HOH HOH . 
G 4 HOH A 33 434 100 HOH HOH . 
G 4 HOH A 34 435 101 HOH HOH . 
G 4 HOH A 35 436 103 HOH HOH . 
G 4 HOH A 36 437 104 HOH HOH . 
G 4 HOH A 37 438 107 HOH HOH . 
G 4 HOH A 38 439 108 HOH HOH . 
G 4 HOH A 39 440 110 HOH HOH . 
G 4 HOH A 40 441 113 HOH HOH . 
G 4 HOH A 41 442 115 HOH HOH . 
G 4 HOH A 42 443 121 HOH HOH . 
G 4 HOH A 43 444 126 HOH HOH . 
G 4 HOH A 44 445 127 HOH HOH . 
G 4 HOH A 45 446 130 HOH HOH . 
G 4 HOH A 46 447 139 HOH HOH . 
G 4 HOH A 47 448 149 HOH HOH . 
G 4 HOH A 48 449 159 HOH HOH . 
G 4 HOH A 49 450 160 HOH HOH . 
G 4 HOH A 50 451 167 HOH HOH . 
G 4 HOH A 51 452 168 HOH HOH . 
G 4 HOH A 52 453 169 HOH HOH . 
G 4 HOH A 53 454 171 HOH HOH . 
G 4 HOH A 54 455 173 HOH HOH . 
G 4 HOH A 55 456 174 HOH HOH . 
G 4 HOH A 56 457 176 HOH HOH . 
G 4 HOH A 57 458 177 HOH HOH . 
G 4 HOH A 58 459 186 HOH HOH . 
G 4 HOH A 59 460 190 HOH HOH . 
G 4 HOH A 60 461 195 HOH HOH . 
G 4 HOH A 61 462 196 HOH HOH . 
G 4 HOH A 62 463 197 HOH HOH . 
G 4 HOH A 63 464 198 HOH HOH . 
G 4 HOH A 64 465 203 HOH HOH . 
G 4 HOH A 65 466 206 HOH HOH . 
G 4 HOH A 66 467 210 HOH HOH . 
G 4 HOH A 67 468 218 HOH HOH . 
G 4 HOH A 68 469 220 HOH HOH . 
G 4 HOH A 69 470 225 HOH HOH . 
G 4 HOH A 70 471 226 HOH HOH . 
G 4 HOH A 71 472 229 HOH HOH . 
G 4 HOH A 72 473 238 HOH HOH . 
G 4 HOH A 73 474 258 HOH HOH . 
G 4 HOH A 74 475 260 HOH HOH . 
G 4 HOH A 75 476 263 HOH HOH . 
G 4 HOH A 76 477 284 HOH HOH . 
G 4 HOH A 77 478 286 HOH HOH . 
G 4 HOH A 78 479 291 HOH HOH . 
G 4 HOH A 79 480 294 HOH HOH . 
G 4 HOH A 80 481 301 HOH HOH . 
G 4 HOH A 81 482 302 HOH HOH . 
G 4 HOH A 82 483 313 HOH HOH . 
G 4 HOH A 83 484 317 HOH HOH . 
G 4 HOH A 84 485 321 HOH HOH . 
G 4 HOH A 85 486 339 HOH HOH . 
G 4 HOH A 86 487 345 HOH HOH . 
G 4 HOH A 87 488 192 HOH HOH . 
G 4 HOH A 88 489 215 HOH HOH . 
G 4 HOH A 89 490 343 HOH HOH . 
H 4 HOH B 1 402 9 HOH HOH . 
H 4 HOH B 2 403 11 HOH HOH . 
H 4 HOH B 3 404 29 HOH HOH . 
H 4 HOH B 4 405 35 HOH HOH . 
H 4 HOH B 5 406 49 HOH HOH . 
H 4 HOH B 6 407 50 HOH HOH . 
H 4 HOH B 7 408 53 HOH HOH . 
H 4 HOH B 8 409 55 HOH HOH . 
H 4 HOH B 9 410 71 HOH HOH . 
H 4 HOH B 10 411 72 HOH HOH . 
H 4 HOH B 11 412 73 HOH HOH . 
H 4 HOH B 12 413 81 HOH HOH . 
H 4 HOH B 13 414 84 HOH HOH . 
H 4 HOH B 14 415 95 HOH HOH . 
H 4 HOH B 15 416 98 HOH HOH . 
H 4 HOH B 16 417 102 HOH HOH . 
H 4 HOH B 17 418 116 HOH HOH . 
H 4 HOH B 18 419 122 HOH HOH . 
H 4 HOH B 19 420 123 HOH HOH . 
H 4 HOH B 20 421 124 HOH HOH . 
H 4 HOH B 21 422 131 HOH HOH . 
H 4 HOH B 22 423 132 HOH HOH . 
H 4 HOH B 23 424 134 HOH HOH . 
H 4 HOH B 24 425 140 HOH HOH . 
H 4 HOH B 25 426 141 HOH HOH . 
H 4 HOH B 26 427 142 HOH HOH . 
H 4 HOH B 27 428 144 HOH HOH . 
H 4 HOH B 28 429 145 HOH HOH . 
H 4 HOH B 29 430 164 HOH HOH . 
H 4 HOH B 30 431 166 HOH HOH . 
H 4 HOH B 31 432 172 HOH HOH . 
H 4 HOH B 32 433 178 HOH HOH . 
H 4 HOH B 33 434 182 HOH HOH . 
H 4 HOH B 34 435 191 HOH HOH . 
H 4 HOH B 35 437 193 HOH HOH . 
H 4 HOH B 36 438 199 HOH HOH . 
H 4 HOH B 37 439 202 HOH HOH . 
H 4 HOH B 38 440 207 HOH HOH . 
H 4 HOH B 39 441 213 HOH HOH . 
H 4 HOH B 40 442 214 HOH HOH . 
H 4 HOH B 41 444 217 HOH HOH . 
H 4 HOH B 42 445 219 HOH HOH . 
H 4 HOH B 43 446 234 HOH HOH . 
H 4 HOH B 44 447 236 HOH HOH . 
H 4 HOH B 45 448 237 HOH HOH . 
H 4 HOH B 46 449 245 HOH HOH . 
H 4 HOH B 47 450 248 HOH HOH . 
H 4 HOH B 48 451 250 HOH HOH . 
H 4 HOH B 49 452 253 HOH HOH . 
H 4 HOH B 50 453 257 HOH HOH . 
H 4 HOH B 51 454 259 HOH HOH . 
H 4 HOH B 52 455 261 HOH HOH . 
H 4 HOH B 53 456 262 HOH HOH . 
H 4 HOH B 54 457 265 HOH HOH . 
H 4 HOH B 55 458 270 HOH HOH . 
H 4 HOH B 56 459 273 HOH HOH . 
H 4 HOH B 57 460 278 HOH HOH . 
H 4 HOH B 58 461 281 HOH HOH . 
H 4 HOH B 59 462 282 HOH HOH . 
H 4 HOH B 60 463 283 HOH HOH . 
H 4 HOH B 61 464 287 HOH HOH . 
H 4 HOH B 62 465 290 HOH HOH . 
H 4 HOH B 63 466 297 HOH HOH . 
H 4 HOH B 64 467 299 HOH HOH . 
H 4 HOH B 65 468 300 HOH HOH . 
H 4 HOH B 66 469 303 HOH HOH . 
H 4 HOH B 67 470 316 HOH HOH . 
H 4 HOH B 68 471 318 HOH HOH . 
H 4 HOH B 69 472 320 HOH HOH . 
H 4 HOH B 70 473 333 HOH HOH . 
H 4 HOH B 71 475 346 HOH HOH . 
H 4 HOH B 72 476 350 HOH HOH . 
H 4 HOH B 73 477 356 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . C 2 52.272 55.089 99.75 1 52.06 ? PB ADP 301 A 1 
HETATM 2 O O1B ADP . . . C 2 51.284 55.066 98.621 1 50.84 ? O1B ADP 301 A 1 
HETATM 3 O O2B ADP . . . C 2 51.713 54.69 101.106 1 50.59 ? O2B ADP 301 A 1 
HETATM 4 O O3B ADP . . . C 2 53.169 56.302 99.852 1 51.29 ? O3B ADP 301 A 1 
HETATM 5 P PA ADP . . . C 2 53.364 52.99 98.026 1 50.6 ? PA ADP 301 A 1 
HETATM 6 O O1A ADP . . . C 2 52.163 52.04 98.033 1 50.54 ? O1A ADP 301 A 1 
HETATM 7 O O2A ADP . . . C 2 53.607 53.756 96.75 1 49.93 ? O2A ADP 301 A 1 
HETATM 8 O O3A ADP . . . C 2 53.344 53.945 99.339 1 51.11 ? O3A ADP 301 A 1 
HETATM 9 O O5' ADP . . . C 2 54.692 52.214 98.441 1 46.58 ? O5' ADP 301 A 1 
HETATM 10 C C5' ADP . . . C 2 55.981 52.837 98.525 1 44.97 ? C5' ADP 301 A 1 
HETATM 11 C C4' ADP . . . C 2 57.07 51.904 97.977 1 45.36 ? C4' ADP 301 A 1 
HETATM 12 O O4' ADP . . . C 2 57.324 50.803 98.857 1 46.72 ? O4' ADP 301 A 1 
HETATM 13 C C3' ADP . . . C 2 56.625 51.258 96.665 1 45.78 ? C3' ADP 301 A 1 
HETATM 14 O O3' ADP . . . C 2 57.765 50.875 95.929 1 42.98 ? O3' ADP 301 A 1 
HETATM 15 C C2' ADP . . . C 2 55.869 50.021 97.123 1 46.81 ? C2' ADP 301 A 1 
HETATM 16 O O2' ADP . . . C 2 55.686 49.057 96.098 1 46.27 ? O2' ADP 301 A 1 
HETATM 17 C C1' ADP . . . C 2 56.755 49.591 98.284 1 49.01 ? C1' ADP 301 A 1 
HETATM 18 N N9 ADP . . . C 2 55.996 48.855 99.299 1 48.68 ? N9 ADP 301 A 1 
HETATM 19 C C8 ADP . . . C 2 54.723 49.023 99.745 1 49.97 ? C8 ADP 301 A 1 
HETATM 20 N N7 ADP . . . C 2 54.442 48.111 100.732 1 49.27 ? N7 ADP 301 A 1 
HETATM 21 C C5 ADP . . . C 2 55.558 47.355 100.88 1 50.61 ? C5 ADP 301 A 1 
HETATM 22 C C6 ADP . . . C 2 55.983 46.208 101.735 1 50.57 ? C6 ADP 301 A 1 
HETATM 23 N N6 ADP . . . C 2 55.206 45.685 102.587 1 50.48 ? N6 ADP 301 A 1 
HETATM 24 N N1 ADP . . . C 2 57.221 45.727 101.599 1 50.69 ? N1 ADP 301 A 1 
HETATM 25 C C2 ADP . . . C 2 58.201 46.244 100.665 1 50.61 ? C2 ADP 301 A 1 
HETATM 26 N N3 ADP . . . C 2 57.71 47.361 99.861 1 51.28 ? N3 ADP 301 A 1 
HETATM 27 C C4 ADP . . . C 2 56.468 47.853 99.993 1 49.7 ? C4 ADP 301 A 1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#