data_2ZI9 # _model_server_result.job_id i4T-BdYYqyiMqWSn9jjdJw _model_server_result.datetime_utc '2024-11-13 05:45:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zi9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 2ZI9 # _exptl.entry_id 2ZI9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 285.687 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2-chloro-2'-deoxyadenosine" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ZI9 _cell.length_a 56.39 _cell.length_b 132.71 _cell.length_c 157.47 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZI9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C10 H12 Cl N5 O3' _chem_comp.formula_weight 285.687 _chem_comp.id CL9 _chem_comp.mon_nstd_flag . _chem_comp.name "2-chloro-2'-deoxyadenosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 CL CL9 sing 114 n n C2 N3 CL9 doub 115 n y C2 N1 CL9 sing 116 n y C4 C5 CL9 doub 117 n y C4 N3 CL9 sing 118 n y C4 N9 CL9 sing 119 n y C5 C6 CL9 sing 120 n y C5 N7 CL9 sing 121 n y C6 N6 CL9 sing 122 n n C6 N1 CL9 doub 123 n y C8 N9 CL9 sing 124 n y C8 N7 CL9 doub 125 n y N9 C1' CL9 sing 126 n n C1' C2' CL9 sing 127 n n C1' O4' CL9 sing 128 n n C2' C3' CL9 sing 129 n n C3' O3' CL9 sing 130 n n C3' C4' CL9 sing 131 n n C4' O4' CL9 sing 132 n n C4' C5' CL9 sing 133 n n C5' O5' CL9 sing 134 n n C8 H8 CL9 sing 135 n n N6 HN6 CL9 sing 136 n n N6 HN6A CL9 sing 137 n n C1' H1' CL9 sing 138 n n C2' H2' CL9 sing 139 n n C2' "H2'A" CL9 sing 140 n n C3' H3' CL9 sing 141 n n O3' HO3' CL9 sing 142 n n C4' H4' CL9 sing 143 n n C5' H5' CL9 sing 144 n n C5' "H5'A" CL9 sing 145 n n O5' HO5' CL9 sing 146 n n # _atom_sites.entry_id 2ZI9 _atom_sites.fract_transf_matrix[1][1] 0.017734 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007535 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00635 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 301 301 ADP ADP . D 3 CL9 A 1 401 401 CL9 CLA . E 2 ADP B 1 301 301 ADP ADP . F 3 CL9 B 1 401 401 CL9 CLA . G 4 HOH A 1 402 8 HOH HOH . G 4 HOH A 2 403 10 HOH HOH . G 4 HOH A 3 404 12 HOH HOH . G 4 HOH A 4 405 13 HOH HOH . G 4 HOH A 5 406 14 HOH HOH . G 4 HOH A 6 407 15 HOH HOH . G 4 HOH A 7 408 16 HOH HOH . G 4 HOH A 8 409 17 HOH HOH . G 4 HOH A 9 410 18 HOH HOH . G 4 HOH A 10 411 19 HOH HOH . G 4 HOH A 11 412 20 HOH HOH . G 4 HOH A 12 413 21 HOH HOH . G 4 HOH A 13 414 31 HOH HOH . G 4 HOH A 14 415 32 HOH HOH . G 4 HOH A 15 416 40 HOH HOH . G 4 HOH A 16 417 41 HOH HOH . G 4 HOH A 17 418 45 HOH HOH . G 4 HOH A 18 419 48 HOH HOH . G 4 HOH A 19 420 60 HOH HOH . G 4 HOH A 20 421 65 HOH HOH . G 4 HOH A 21 422 66 HOH HOH . G 4 HOH A 22 423 67 HOH HOH . G 4 HOH A 23 424 68 HOH HOH . G 4 HOH A 24 425 76 HOH HOH . G 4 HOH A 25 426 77 HOH HOH . G 4 HOH A 26 427 80 HOH HOH . G 4 HOH A 27 428 82 HOH HOH . G 4 HOH A 28 429 83 HOH HOH . G 4 HOH A 29 430 89 HOH HOH . G 4 HOH A 30 431 90 HOH HOH . G 4 HOH A 31 432 93 HOH HOH . G 4 HOH A 32 433 97 HOH HOH . G 4 HOH A 33 434 100 HOH HOH . G 4 HOH A 34 435 101 HOH HOH . G 4 HOH A 35 436 103 HOH HOH . G 4 HOH A 36 437 104 HOH HOH . G 4 HOH A 37 438 107 HOH HOH . G 4 HOH A 38 439 108 HOH HOH . G 4 HOH A 39 440 110 HOH HOH . G 4 HOH A 40 441 113 HOH HOH . G 4 HOH A 41 442 115 HOH HOH . G 4 HOH A 42 443 121 HOH HOH . G 4 HOH A 43 444 126 HOH HOH . G 4 HOH A 44 445 127 HOH HOH . G 4 HOH A 45 446 130 HOH HOH . G 4 HOH A 46 447 139 HOH HOH . G 4 HOH A 47 448 149 HOH HOH . G 4 HOH A 48 449 159 HOH HOH . G 4 HOH A 49 450 160 HOH HOH . G 4 HOH A 50 451 167 HOH HOH . G 4 HOH A 51 452 168 HOH HOH . G 4 HOH A 52 453 169 HOH HOH . G 4 HOH A 53 454 171 HOH HOH . G 4 HOH A 54 455 173 HOH HOH . G 4 HOH A 55 456 174 HOH HOH . G 4 HOH A 56 457 176 HOH HOH . G 4 HOH A 57 458 177 HOH HOH . G 4 HOH A 58 459 186 HOH HOH . G 4 HOH A 59 460 190 HOH HOH . G 4 HOH A 60 461 195 HOH HOH . G 4 HOH A 61 462 196 HOH HOH . G 4 HOH A 62 463 197 HOH HOH . G 4 HOH A 63 464 198 HOH HOH . G 4 HOH A 64 465 203 HOH HOH . G 4 HOH A 65 466 206 HOH HOH . G 4 HOH A 66 467 210 HOH HOH . G 4 HOH A 67 468 218 HOH HOH . G 4 HOH A 68 469 220 HOH HOH . G 4 HOH A 69 470 225 HOH HOH . G 4 HOH A 70 471 226 HOH HOH . G 4 HOH A 71 472 229 HOH HOH . G 4 HOH A 72 473 238 HOH HOH . G 4 HOH A 73 474 258 HOH HOH . G 4 HOH A 74 475 260 HOH HOH . G 4 HOH A 75 476 263 HOH HOH . G 4 HOH A 76 477 284 HOH HOH . G 4 HOH A 77 478 286 HOH HOH . G 4 HOH A 78 479 291 HOH HOH . G 4 HOH A 79 480 294 HOH HOH . G 4 HOH A 80 481 301 HOH HOH . G 4 HOH A 81 482 302 HOH HOH . G 4 HOH A 82 483 313 HOH HOH . G 4 HOH A 83 484 317 HOH HOH . G 4 HOH A 84 485 321 HOH HOH . G 4 HOH A 85 486 339 HOH HOH . G 4 HOH A 86 487 345 HOH HOH . G 4 HOH A 87 488 192 HOH HOH . G 4 HOH A 88 489 215 HOH HOH . G 4 HOH A 89 490 343 HOH HOH . H 4 HOH B 1 402 9 HOH HOH . H 4 HOH B 2 403 11 HOH HOH . H 4 HOH B 3 404 29 HOH HOH . H 4 HOH B 4 405 35 HOH HOH . H 4 HOH B 5 406 49 HOH HOH . H 4 HOH B 6 407 50 HOH HOH . H 4 HOH B 7 408 53 HOH HOH . H 4 HOH B 8 409 55 HOH HOH . H 4 HOH B 9 410 71 HOH HOH . H 4 HOH B 10 411 72 HOH HOH . H 4 HOH B 11 412 73 HOH HOH . H 4 HOH B 12 413 81 HOH HOH . H 4 HOH B 13 414 84 HOH HOH . H 4 HOH B 14 415 95 HOH HOH . H 4 HOH B 15 416 98 HOH HOH . H 4 HOH B 16 417 102 HOH HOH . H 4 HOH B 17 418 116 HOH HOH . H 4 HOH B 18 419 122 HOH HOH . H 4 HOH B 19 420 123 HOH HOH . H 4 HOH B 20 421 124 HOH HOH . H 4 HOH B 21 422 131 HOH HOH . H 4 HOH B 22 423 132 HOH HOH . H 4 HOH B 23 424 134 HOH HOH . H 4 HOH B 24 425 140 HOH HOH . H 4 HOH B 25 426 141 HOH HOH . H 4 HOH B 26 427 142 HOH HOH . H 4 HOH B 27 428 144 HOH HOH . H 4 HOH B 28 429 145 HOH HOH . H 4 HOH B 29 430 164 HOH HOH . H 4 HOH B 30 431 166 HOH HOH . H 4 HOH B 31 432 172 HOH HOH . H 4 HOH B 32 433 178 HOH HOH . H 4 HOH B 33 434 182 HOH HOH . H 4 HOH B 34 435 191 HOH HOH . H 4 HOH B 35 437 193 HOH HOH . H 4 HOH B 36 438 199 HOH HOH . H 4 HOH B 37 439 202 HOH HOH . H 4 HOH B 38 440 207 HOH HOH . H 4 HOH B 39 441 213 HOH HOH . H 4 HOH B 40 442 214 HOH HOH . H 4 HOH B 41 444 217 HOH HOH . H 4 HOH B 42 445 219 HOH HOH . H 4 HOH B 43 446 234 HOH HOH . H 4 HOH B 44 447 236 HOH HOH . H 4 HOH B 45 448 237 HOH HOH . H 4 HOH B 46 449 245 HOH HOH . H 4 HOH B 47 450 248 HOH HOH . H 4 HOH B 48 451 250 HOH HOH . H 4 HOH B 49 452 253 HOH HOH . H 4 HOH B 50 453 257 HOH HOH . H 4 HOH B 51 454 259 HOH HOH . H 4 HOH B 52 455 261 HOH HOH . H 4 HOH B 53 456 262 HOH HOH . H 4 HOH B 54 457 265 HOH HOH . H 4 HOH B 55 458 270 HOH HOH . H 4 HOH B 56 459 273 HOH HOH . H 4 HOH B 57 460 278 HOH HOH . H 4 HOH B 58 461 281 HOH HOH . H 4 HOH B 59 462 282 HOH HOH . H 4 HOH B 60 463 283 HOH HOH . H 4 HOH B 61 464 287 HOH HOH . H 4 HOH B 62 465 290 HOH HOH . H 4 HOH B 63 466 297 HOH HOH . H 4 HOH B 64 467 299 HOH HOH . H 4 HOH B 65 468 300 HOH HOH . H 4 HOH B 66 469 303 HOH HOH . H 4 HOH B 67 470 316 HOH HOH . H 4 HOH B 68 471 318 HOH HOH . H 4 HOH B 69 472 320 HOH HOH . H 4 HOH B 70 473 333 HOH HOH . H 4 HOH B 71 475 346 HOH HOH . H 4 HOH B 72 476 350 HOH HOH . H 4 HOH B 73 477 356 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 CL9 . . . D 3 51.665 67.612 101.469 1 60.73 ? C2 CL9 401 A 1 HETATM 2 C C4 CL9 . . . D 3 51.176 65.665 100.395 1 61.33 ? C4 CL9 401 A 1 HETATM 3 C C5 CL9 . . . D 3 49.855 65.778 100.798 1 61.26 ? C5 CL9 401 A 1 HETATM 4 C C6 CL9 . . . D 3 49.459 66.853 101.549 1 61.48 ? C6 CL9 401 A 1 HETATM 5 C C8 CL9 . . . D 3 50.084 63.98 99.646 1 62.25 ? C8 CL9 401 A 1 HETATM 6 CL CL CL9 . . . D 3 52.863 68.851 101.887 1 63.84 ? CL CL9 401 A 1 HETATM 7 N N3 CL9 . . . D 3 52.079 66.586 100.73 1 59.56 ? N3 CL9 401 A 1 HETATM 8 N N9 CL9 . . . D 3 51.293 64.552 99.707 1 61.42 ? N9 CL9 401 A 1 HETATM 9 N N7 CL9 . . . D 3 49.189 64.729 100.328 1 61.56 ? N7 CL9 401 A 1 HETATM 10 N N6 CL9 . . . D 3 48.182 66.972 101.952 1 61.6 ? N6 CL9 401 A 1 HETATM 11 N N1 CL9 . . . D 3 50.383 67.769 101.877 1 61.69 ? N1 CL9 401 A 1 HETATM 12 C C1' CL9 . . . D 3 52.518 64.073 99.051 1 60.19 ? C1' CL9 401 A 1 HETATM 13 C C2' CL9 . . . D 3 53.5 63.374 99.95 1 58.83 ? C2' CL9 401 A 1 HETATM 14 C C3' CL9 . . . D 3 54.171 62.445 98.966 1 57.83 ? C3' CL9 401 A 1 HETATM 15 O O3' CL9 . . . D 3 55.251 63.177 98.383 1 56.94 ? O3' CL9 401 A 1 HETATM 16 C C4' CL9 . . . D 3 53.15 62.183 97.875 1 57.63 ? C4' CL9 401 A 1 HETATM 17 O O4' CL9 . . . D 3 52.119 63.12 98.076 1 57.47 ? O4' CL9 401 A 1 HETATM 18 C C5' CL9 . . . D 3 52.466 60.842 97.952 1 58.08 ? C5' CL9 401 A 1 HETATM 19 O O5' CL9 . . . D 3 51.286 61.088 98.701 1 58.81 ? O5' CL9 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #