data_2ZIF
#
_model_server_result.job_id            ITgqPIW4VavJIXO1fnmMwg 
_model_server_result.datetime_utc      '2024-11-22 15:07:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2zif 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":298}' 
#
_entry.id    2ZIF 
#
_exptl.entry_id    2ZIF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.06 
_cell.angle_gamma         90 
_cell.entry_id            2ZIF 
_cell.length_a            63.9 
_cell.length_b            58.636 
_cell.length_c            81.224 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZIF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 277 n n 
N HN1 SAM sing 278 n n 
N HN2 SAM sing 279 n n 
CA C SAM sing 280 n n 
CA CB SAM sing 281 n n 
CA HA SAM sing 282 n n 
C O SAM doub 283 n n 
C OXT SAM sing 284 n n 
CB CG SAM sing 285 n n 
CB HB1 SAM sing 286 n n 
CB HB2 SAM sing 287 n n 
CG SD SAM sing 288 n n 
CG HG1 SAM sing 289 n n 
CG HG2 SAM sing 290 n n 
SD CE SAM sing 291 n n 
SD C5' SAM sing 292 n n 
CE HE1 SAM sing 293 n n 
CE HE2 SAM sing 294 n n 
CE HE3 SAM sing 295 n n 
C5' C4' SAM sing 296 n n 
C5' "H5'1" SAM sing 297 n n 
C5' "H5'2" SAM sing 298 n n 
C4' O4' SAM sing 299 n n 
C4' C3' SAM sing 300 n n 
C4' H4' SAM sing 301 n n 
O4' C1' SAM sing 302 n n 
C3' O3' SAM sing 303 n n 
C3' C2' SAM sing 304 n n 
C3' H3' SAM sing 305 n n 
O3' HO3' SAM sing 306 n n 
C2' O2' SAM sing 307 n n 
C2' C1' SAM sing 308 n n 
C2' H2' SAM sing 309 n n 
O2' HO2' SAM sing 310 n n 
C1' N9 SAM sing 311 n n 
C1' H1' SAM sing 312 n n 
N9 C8 SAM sing 313 n y 
N9 C4 SAM sing 314 n y 
C8 N7 SAM doub 315 n y 
C8 H8 SAM sing 316 n n 
N7 C5 SAM sing 317 n y 
C5 C6 SAM sing 318 n y 
C5 C4 SAM doub 319 n y 
C6 N6 SAM sing 320 n n 
C6 N1 SAM doub 321 n y 
N6 HN61 SAM sing 322 n n 
N6 HN62 SAM sing 323 n n 
N1 C2 SAM sing 324 n y 
C2 N3 SAM doub 325 n y 
C2 H2 SAM sing 326 n n 
N3 C4 SAM sing 327 n y 
#
_atom_sites.entry_id                     2ZIF 
_atom_sites.fract_transf_matrix[1][1]    0.015649 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004505 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017054 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012812 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAM A 1 298 2 SAM SAM . 
D 2 SAM B 1 298 1 SAM SAM . 
E 3 HOH A 1 299 3 HOH HOH . 
E 3 HOH A 2 300 5 HOH HOH . 
E 3 HOH A 3 301 6 HOH HOH . 
E 3 HOH A 4 302 9 HOH HOH . 
E 3 HOH A 5 303 10 HOH HOH . 
E 3 HOH A 6 304 11 HOH HOH . 
E 3 HOH A 7 305 12 HOH HOH . 
E 3 HOH A 8 306 13 HOH HOH . 
E 3 HOH A 9 307 17 HOH HOH . 
E 3 HOH A 10 308 21 HOH HOH . 
E 3 HOH A 11 309 22 HOH HOH . 
E 3 HOH A 12 310 23 HOH HOH . 
E 3 HOH A 13 311 24 HOH HOH . 
E 3 HOH A 14 312 25 HOH HOH . 
E 3 HOH A 15 313 26 HOH HOH . 
E 3 HOH A 16 314 27 HOH HOH . 
E 3 HOH A 17 315 28 HOH HOH . 
E 3 HOH A 18 316 30 HOH HOH . 
E 3 HOH A 19 317 31 HOH HOH . 
E 3 HOH A 20 318 36 HOH HOH . 
E 3 HOH A 21 319 37 HOH HOH . 
E 3 HOH A 22 320 38 HOH HOH . 
E 3 HOH A 23 321 39 HOH HOH . 
E 3 HOH A 24 322 41 HOH HOH . 
E 3 HOH A 25 323 42 HOH HOH . 
E 3 HOH A 26 324 43 HOH HOH . 
E 3 HOH A 27 325 44 HOH HOH . 
E 3 HOH A 28 326 45 HOH HOH . 
E 3 HOH A 29 327 46 HOH HOH . 
E 3 HOH A 30 328 47 HOH HOH . 
E 3 HOH A 31 329 48 HOH HOH . 
E 3 HOH A 32 330 51 HOH HOH . 
E 3 HOH A 33 331 53 HOH HOH . 
E 3 HOH A 34 332 54 HOH HOH . 
E 3 HOH A 35 333 58 HOH HOH . 
F 3 HOH B 1 299 1 HOH HOH . 
F 3 HOH B 2 300 2 HOH HOH . 
F 3 HOH B 3 301 4 HOH HOH . 
F 3 HOH B 4 302 7 HOH HOH . 
F 3 HOH B 5 303 8 HOH HOH . 
F 3 HOH B 6 304 14 HOH HOH . 
F 3 HOH B 7 305 15 HOH HOH . 
F 3 HOH B 8 306 16 HOH HOH . 
F 3 HOH B 9 307 18 HOH HOH . 
F 3 HOH B 10 308 19 HOH HOH . 
F 3 HOH B 11 309 20 HOH HOH . 
F 3 HOH B 12 310 29 HOH HOH . 
F 3 HOH B 13 311 32 HOH HOH . 
F 3 HOH B 14 312 33 HOH HOH . 
F 3 HOH B 15 313 34 HOH HOH . 
F 3 HOH B 16 314 35 HOH HOH . 
F 3 HOH B 17 315 40 HOH HOH . 
F 3 HOH B 18 316 49 HOH HOH . 
F 3 HOH B 19 317 50 HOH HOH . 
F 3 HOH B 20 318 52 HOH HOH . 
F 3 HOH B 21 319 55 HOH HOH . 
F 3 HOH B 22 320 56 HOH HOH . 
F 3 HOH B 23 321 57 HOH HOH . 
F 3 HOH B 24 322 59 HOH HOH . 
F 3 HOH B 25 323 60 HOH HOH . 
F 3 HOH B 26 324 61 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . D 2 47.375 29.849 46.058 1 68.08 ? N SAM 298 B 1 
HETATM 2 C CA SAM . . . D 2 48.063 30.712 45.091 1 68.09 ? CA SAM 298 B 1 
HETATM 3 C C SAM . . . D 2 49.503 30.344 44.696 1 69.06 ? C SAM 298 B 1 
HETATM 4 O O SAM . . . D 2 50.257 31.243 44.309 1 70.35 ? O SAM 298 B 1 
HETATM 5 O OXT SAM . . . D 2 49.829 29.154 44.777 1 70.26 ? OXT SAM 298 B 1 
HETATM 6 C CB SAM . . . D 2 48.104 32.19 45.561 1 66.66 ? CB SAM 298 B 1 
HETATM 7 C CG SAM . . . D 2 46.652 33.092 45.051 1 65.33 ? CG SAM 298 B 1 
HETATM 8 S SD SAM . . . D 2 46.718 34.722 45.899 1 63.9 ? SD SAM 298 B 1 
HETATM 9 C CE SAM . . . D 2 45.885 34.431 47.493 1 64 ? CE SAM 298 B 1 
HETATM 10 C C5' SAM . . . D 2 45.654 35.81 44.93 1 64.76 ? C5' SAM 298 B 1 
HETATM 11 C C4' SAM . . . D 2 46.23 36.222 43.566 1 63.84 ? C4' SAM 298 B 1 
HETATM 12 O O4' SAM . . . D 2 45.318 37.032 42.852 1 64.88 ? O4' SAM 298 B 1 
HETATM 13 C C3' SAM . . . D 2 47.563 36.997 43.609 1 64.64 ? C3' SAM 298 B 1 
HETATM 14 O O3' SAM . . . D 2 48.642 36.26 43.05 1 64.38 ? O3' SAM 298 B 1 
HETATM 15 C C2' SAM . . . D 2 47.214 38.349 42.989 1 64.32 ? C2' SAM 298 B 1 
HETATM 16 O O2' SAM . . . D 2 48.233 38.816 42.102 1 62.88 ? O2' SAM 298 B 1 
HETATM 17 C C1' SAM . . . D 2 46.015 37.997 42.105 1 65.26 ? C1' SAM 298 B 1 
HETATM 18 N N9 SAM . . . D 2 45.043 39.075 41.851 1 67.11 ? N9 SAM 298 B 1 
HETATM 19 C C8 SAM . . . D 2 44.599 40.11 42.602 1 67.77 ? C8 SAM 298 B 1 
HETATM 20 N N7 SAM . . . D 2 43.68 40.864 41.984 1 68.41 ? N7 SAM 298 B 1 
HETATM 21 C C5 SAM . . . D 2 43.497 40.285 40.725 1 67.95 ? C5 SAM 298 B 1 
HETATM 22 C C6 SAM . . . D 2 42.727 40.505 39.588 1 67.34 ? C6 SAM 298 B 1 
HETATM 23 N N6 SAM . . . D 2 41.846 41.538 39.51 1 67.53 ? N6 SAM 298 B 1 
HETATM 24 N N1 SAM . . . D 2 42.827 39.677 38.491 1 67.97 ? N1 SAM 298 B 1 
HETATM 25 C C2 SAM . . . D 2 43.688 38.636 38.517 1 67.84 ? C2 SAM 298 B 1 
HETATM 26 N N3 SAM . . . D 2 44.468 38.353 39.579 1 66.65 ? N3 SAM 298 B 1 
HETATM 27 C C4 SAM . . . D 2 44.357 39.173 40.656 1 67.46 ? C4 SAM 298 B 1 
#
_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           27 
#