data_2ZIQ # _model_server_result.job_id 2VIgG8YCwhn71RLjo9qqtw _model_server_result.datetime_utc '2024-10-18 16:31:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ziq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 2ZIQ # _exptl.entry_id 2ZIQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 344.451 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(4-carbamimidoylbenzyl)-1-(4-methylpentanoyl)-L-prolinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.3 _cell.angle_gamma 90 _cell.entry_id 2ZIQ _cell.length_a 70.2 _cell.length_b 71.6 _cell.length_c 72.3 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZIQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? covale ? covale1 C C GLU 9 I GLU 62 1_555 C N TYS 10 I TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 C C TYS 10 I TYS 63 1_555 C N LEU 11 I LEU 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? # _chem_comp.formula 'C19 H28 N4 O2' _chem_comp.formula_weight 344.451 _chem_comp.id 26U _chem_comp.mon_nstd_flag . _chem_comp.name N-(4-carbamimidoylbenzyl)-1-(4-methylpentanoyl)-L-prolinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 N1 26U sing 1 n n C1 N1 26U sing 2 n n N1 C14 26U sing 3 n n C2 C1 26U sing 4 n n C7 C1 26U sing 5 n n C1 H1 26U sing 6 n n O22 C7 26U doub 7 n n C7 N23 26U sing 8 n n C24 N23 26U sing 9 n n N23 HN23 26U sing 10 n n C24 C25 26U sing 11 n n C24 H24 26U sing 12 n n C24 H24A 26U sing 13 n n C25 C26 26U doub 14 n y C25 C30 26U sing 15 n y C26 C27 26U sing 16 n y C26 H26 26U sing 17 n n C27 C28 26U doub 18 n y C27 H27 26U sing 19 n n C29 C28 26U sing 20 n y C28 C21 26U sing 21 n n C21 N46 26U doub 22 n n C21 N47 26U sing 23 n n N46 HN46 26U sing 24 n n N47 HN47 26U sing 25 n n N47 HN4A 26U sing 26 n n C30 C29 26U doub 27 n y C29 H29 26U sing 28 n n C30 H30 26U sing 29 n n C3 C2 26U sing 30 n n C2 H2 26U sing 31 n n C2 H2A 26U sing 32 n n C3 C4 26U sing 33 n n C3 H3 26U sing 34 n n C4 H4 26U sing 35 n n C14 O32 26U doub 36 n n C14 C15 26U sing 37 n n C15 C33 26U sing 38 n n C15 H15 26U sing 39 n n C15 H15A 26U sing 40 n n C33 C17 26U sing 41 n n C33 H33 26U sing 42 n n C33 H33A 26U sing 43 n n C12 C17 26U sing 44 n n C17 C49 26U sing 45 n n C17 H17 26U sing 46 n n C49 H49 26U sing 47 n n C49 H49A 26U sing 48 n n C49 H49B 26U sing 49 n n C12 H12 26U sing 50 n n C12 H12A 26U sing 51 n n C12 H12B 26U sing 52 n n C3 H3A 26U sing 53 n n C4 H4A 26U sing 54 n n # _atom_sites.entry_id 2ZIQ _atom_sites.fract_transf_matrix[1][1] 0.014254 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002585 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013963 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014057 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 26U H 1 701 701 26U 26U . E 5 NA H 1 702 702 NA NA . F 5 NA H 1 703 703 NA NA . G 6 BEN H 1 901 901 BEN BEN . H 7 HOH L 1 1009 1009 HOH HOH . H 7 HOH L 2 1013 1013 HOH HOH . H 7 HOH L 3 1021 1021 HOH HOH . H 7 HOH L 4 1035 1035 HOH HOH . H 7 HOH L 5 1045 1045 HOH HOH . H 7 HOH L 6 1053 1053 HOH HOH . H 7 HOH L 7 1084 1084 HOH HOH . H 7 HOH L 8 1093 1093 HOH HOH . H 7 HOH L 9 1114 1114 HOH HOH . H 7 HOH L 10 1119 1119 HOH HOH . H 7 HOH L 11 1123 1123 HOH HOH . H 7 HOH L 12 1124 1124 HOH HOH . H 7 HOH L 13 1128 1128 HOH HOH . H 7 HOH L 14 1134 1134 HOH HOH . H 7 HOH L 15 1142 1142 HOH HOH . H 7 HOH L 16 1147 1147 HOH HOH . H 7 HOH L 17 1151 1151 HOH HOH . H 7 HOH L 18 1158 1158 HOH HOH . H 7 HOH L 19 1166 1166 HOH HOH . I 7 HOH H 1 1001 1001 HOH HOH . I 7 HOH H 2 1002 1002 HOH HOH . I 7 HOH H 3 1003 1003 HOH HOH . I 7 HOH H 4 1004 1004 HOH HOH . I 7 HOH H 5 1005 1005 HOH HOH . I 7 HOH H 6 1006 1006 HOH HOH . I 7 HOH H 7 1007 1007 HOH HOH . I 7 HOH H 8 1008 1008 HOH HOH . I 7 HOH H 9 1010 1010 HOH HOH . I 7 HOH H 10 1011 1011 HOH HOH . I 7 HOH H 11 1012 1012 HOH HOH . I 7 HOH H 12 1014 1014 HOH HOH . I 7 HOH H 13 1015 1015 HOH HOH . I 7 HOH H 14 1016 1016 HOH HOH . I 7 HOH H 15 1017 1017 HOH HOH . I 7 HOH H 16 1018 1018 HOH HOH . I 7 HOH H 17 1019 1019 HOH HOH . I 7 HOH H 18 1020 1020 HOH HOH . I 7 HOH H 19 1022 1022 HOH HOH . I 7 HOH H 20 1023 1023 HOH HOH . I 7 HOH H 21 1024 1024 HOH HOH . I 7 HOH H 22 1025 1025 HOH HOH . I 7 HOH H 23 1026 1026 HOH HOH . I 7 HOH H 24 1027 1027 HOH HOH . I 7 HOH H 25 1028 1028 HOH HOH . I 7 HOH H 26 1029 1029 HOH HOH . I 7 HOH H 27 1030 1030 HOH HOH . I 7 HOH H 28 1031 1031 HOH HOH . I 7 HOH H 29 1032 1032 HOH HOH . I 7 HOH H 30 1033 1033 HOH HOH . I 7 HOH H 31 1034 1034 HOH HOH . I 7 HOH H 32 1036 1036 HOH HOH . I 7 HOH H 33 1037 1037 HOH HOH . I 7 HOH H 34 1038 1038 HOH HOH . I 7 HOH H 35 1039 1039 HOH HOH . I 7 HOH H 36 1040 1040 HOH HOH . I 7 HOH H 37 1041 1041 HOH HOH . I 7 HOH H 38 1042 1042 HOH HOH . I 7 HOH H 39 1043 1043 HOH HOH . I 7 HOH H 40 1044 1044 HOH HOH . I 7 HOH H 41 1046 1046 HOH HOH . I 7 HOH H 42 1047 1047 HOH HOH . I 7 HOH H 43 1048 1048 HOH HOH . I 7 HOH H 44 1049 1049 HOH HOH . I 7 HOH H 45 1050 1050 HOH HOH . I 7 HOH H 46 1051 1051 HOH HOH . I 7 HOH H 47 1052 1052 HOH HOH . I 7 HOH H 48 1054 1054 HOH HOH . I 7 HOH H 49 1055 1055 HOH HOH . I 7 HOH H 50 1056 1056 HOH HOH . I 7 HOH H 51 1057 1057 HOH HOH . I 7 HOH H 52 1058 1058 HOH HOH . I 7 HOH H 53 1059 1059 HOH HOH . I 7 HOH H 54 1060 1060 HOH HOH . I 7 HOH H 55 1061 1061 HOH HOH . I 7 HOH H 56 1062 1062 HOH HOH . I 7 HOH H 57 1063 1063 HOH HOH . I 7 HOH H 58 1064 1064 HOH HOH . I 7 HOH H 59 1065 1065 HOH HOH . I 7 HOH H 60 1066 1066 HOH HOH . I 7 HOH H 61 1067 1067 HOH HOH . I 7 HOH H 62 1068 1068 HOH HOH . I 7 HOH H 63 1069 1069 HOH HOH . I 7 HOH H 64 1070 1070 HOH HOH . I 7 HOH H 65 1071 1071 HOH HOH . I 7 HOH H 66 1072 1072 HOH HOH . I 7 HOH H 67 1073 1073 HOH HOH . I 7 HOH H 68 1074 1074 HOH HOH . I 7 HOH H 69 1075 1075 HOH HOH . I 7 HOH H 70 1076 1076 HOH HOH . I 7 HOH H 71 1077 1077 HOH HOH . I 7 HOH H 72 1078 1078 HOH HOH . I 7 HOH H 73 1079 1079 HOH HOH . I 7 HOH H 74 1080 1080 HOH HOH . I 7 HOH H 75 1081 1081 HOH HOH . I 7 HOH H 76 1082 1082 HOH HOH . I 7 HOH H 77 1083 1083 HOH HOH . I 7 HOH H 78 1085 1085 HOH HOH . I 7 HOH H 79 1086 1086 HOH HOH . I 7 HOH H 80 1087 1087 HOH HOH . I 7 HOH H 81 1088 1088 HOH HOH . I 7 HOH H 82 1089 1089 HOH HOH . I 7 HOH H 83 1090 1090 HOH HOH . I 7 HOH H 84 1091 1091 HOH HOH . I 7 HOH H 85 1092 1092 HOH HOH . I 7 HOH H 86 1094 1094 HOH HOH . I 7 HOH H 87 1095 1095 HOH HOH . I 7 HOH H 88 1096 1096 HOH HOH . I 7 HOH H 89 1097 1097 HOH HOH . I 7 HOH H 90 1098 1098 HOH HOH . I 7 HOH H 91 1099 1099 HOH HOH . I 7 HOH H 92 1100 1100 HOH HOH . I 7 HOH H 93 1101 1101 HOH HOH . I 7 HOH H 94 1102 1102 HOH HOH . I 7 HOH H 95 1103 1103 HOH HOH . I 7 HOH H 96 1104 1104 HOH HOH . I 7 HOH H 97 1105 1105 HOH HOH . I 7 HOH H 98 1106 1106 HOH HOH . I 7 HOH H 99 1107 1107 HOH HOH . I 7 HOH H 100 1108 1108 HOH HOH . I 7 HOH H 101 1109 1109 HOH HOH . I 7 HOH H 102 1110 1110 HOH HOH . I 7 HOH H 103 1111 1111 HOH HOH . I 7 HOH H 104 1112 1112 HOH HOH . I 7 HOH H 105 1113 1113 HOH HOH . I 7 HOH H 106 1115 1115 HOH HOH . I 7 HOH H 107 1116 1116 HOH HOH . I 7 HOH H 108 1117 1117 HOH HOH . I 7 HOH H 109 1118 1118 HOH HOH . I 7 HOH H 110 1120 1120 HOH HOH . I 7 HOH H 111 1121 1121 HOH HOH . I 7 HOH H 112 1122 1122 HOH HOH . I 7 HOH H 113 1125 1125 HOH HOH . I 7 HOH H 114 1127 1127 HOH HOH . I 7 HOH H 115 1129 1129 HOH HOH . I 7 HOH H 116 1130 1130 HOH HOH . I 7 HOH H 117 1131 1131 HOH HOH . I 7 HOH H 118 1132 1132 HOH HOH . I 7 HOH H 119 1133 1133 HOH HOH . I 7 HOH H 120 1135 1135 HOH HOH . I 7 HOH H 121 1136 1136 HOH HOH . I 7 HOH H 122 1137 1137 HOH HOH . I 7 HOH H 123 1138 1138 HOH HOH . I 7 HOH H 124 1139 1139 HOH HOH . I 7 HOH H 125 1140 1140 HOH HOH . I 7 HOH H 126 1141 1141 HOH HOH . I 7 HOH H 127 1143 1143 HOH HOH . I 7 HOH H 128 1144 1144 HOH HOH . I 7 HOH H 129 1145 1145 HOH HOH . I 7 HOH H 130 1146 1146 HOH HOH . I 7 HOH H 131 1148 1148 HOH HOH . I 7 HOH H 132 1149 1149 HOH HOH . I 7 HOH H 133 1150 1150 HOH HOH . I 7 HOH H 134 1152 1152 HOH HOH . I 7 HOH H 135 1154 1154 HOH HOH . I 7 HOH H 136 1155 1155 HOH HOH . I 7 HOH H 137 1156 1156 HOH HOH . I 7 HOH H 138 1157 1157 HOH HOH . I 7 HOH H 139 1159 1159 HOH HOH . I 7 HOH H 140 1160 1160 HOH HOH . I 7 HOH H 141 1161 1161 HOH HOH . I 7 HOH H 142 1162 1162 HOH HOH . I 7 HOH H 143 1163 1163 HOH HOH . I 7 HOH H 144 1164 1164 HOH HOH . I 7 HOH H 145 1165 1165 HOH HOH . I 7 HOH H 146 1167 1167 HOH HOH . I 7 HOH H 147 1169 1169 HOH HOH . I 7 HOH H 148 1170 1170 HOH HOH . I 7 HOH H 149 1171 1171 HOH HOH . I 7 HOH H 150 1172 1172 HOH HOH . I 7 HOH H 151 1173 1173 HOH HOH . I 7 HOH H 152 1174 1174 HOH HOH . I 7 HOH H 153 1175 1175 HOH HOH . I 7 HOH H 154 1176 1176 HOH HOH . I 7 HOH H 155 1177 1177 HOH HOH . I 7 HOH H 156 1179 1179 HOH HOH . I 7 HOH H 157 1180 1180 HOH HOH . J 7 HOH I 1 1126 1126 HOH HOH . J 7 HOH I 2 1153 1153 HOH HOH . J 7 HOH I 3 1168 1168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C15 26U . . . D 4 19.012 -14.924 23.247 1 32.91 ? C15 26U 701 H 1 HETATM 2 C C33 26U . . . D 4 19.415 -14.559 24.703 1 35.07 ? C33 26U 701 H 1 HETATM 3 C C17 26U . . . D 4 20.598 -13.575 24.903 1 31.66 ? C17 26U 701 H 1 HETATM 4 C C12 26U . . . D 4 21.985 -14.137 24.486 1 34.95 ? C12 26U 701 H 1 HETATM 5 C C49 26U . . . D 4 20.674 -12.955 26.33 1 26.24 ? C49 26U 701 H 1 HETATM 6 C C14 26U . . . D 4 18.34 -13.8 22.484 1 20.1 ? C14 26U 701 H 1 HETATM 7 O O32 26U . . . D 4 17.265 -13.352 22.855 1 27.62 ? O32 26U 701 H 1 HETATM 8 N N1 26U . . . D 4 18.881 -13.288 21.427 1 19.43 ? N1 26U 701 H 1 HETATM 9 C C1 26U . . . D 4 18.378 -12.015 20.99 1 20.17 ? C1 26U 701 H 1 HETATM 10 C C7 26U . . . D 4 16.986 -12.125 20.364 1 27.19 ? C7 26U 701 H 1 HETATM 11 O O22 26U . . . D 4 16.704 -13.217 19.904 1 16.34 ? O22 26U 701 H 1 HETATM 12 C C2 26U . . . D 4 19.413 -11.727 19.871 1 22.37 ? C2 26U 701 H 1 HETATM 13 C C3 26U . . . D 4 20.423 -12.883 19.827 1 23.78 ? C3 26U 701 H 1 HETATM 14 C C4 26U . . . D 4 20.135 -13.865 20.965 1 22.18 ? C4 26U 701 H 1 HETATM 15 N N23 26U . . . D 4 16.275 -11.063 20.372 1 15.66 ? N23 26U 701 H 1 HETATM 16 C C24 26U . . . D 4 14.952 -11.201 19.76 1 15.16 ? C24 26U 701 H 1 HETATM 17 C C25 26U . . . D 4 13.872 -11.098 20.859 1 14.16 ? C25 26U 701 H 1 HETATM 18 C C30 26U . . . D 4 13.399 -12.242 21.486 1 20.4 ? C30 26U 701 H 1 HETATM 19 C C29 26U . . . D 4 12.429 -12.18 22.477 1 21.51 ? C29 26U 701 H 1 HETATM 20 C C28 26U . . . D 4 11.902 -10.943 22.868 1 15.23 ? C28 26U 701 H 1 HETATM 21 C C21 26U . . . D 4 10.836 -10.895 23.957 1 16.56 ? C21 26U 701 H 1 HETATM 22 N N46 26U . . . D 4 10.213 -11.994 24.203 1 16.63 ? N46 26U 701 H 1 HETATM 23 N N47 26U . . . D 4 10.63 -9.775 24.553 1 13.63 ? N47 26U 701 H 1 HETATM 24 C C27 26U . . . D 4 12.373 -9.794 22.242 1 19.66 ? C27 26U 701 H 1 HETATM 25 C C26 26U . . . D 4 13.35 -9.853 21.244 1 17.86 ? C26 26U 701 H 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #