data_2ZIY # _model_server_result.job_id rYZwD7PbY127WjN9A7rtkw _model_server_result.datetime_utc '2024-11-02 07:29:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ziy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":380}' # _entry.id 2ZIY # _exptl.entry_id 2ZIY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ZIY _cell.length_a 84.319 _cell.length_b 108.746 _cell.length_c 142.165 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZIY _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 84.319 0 71.0825 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 107 A CYS 108 1_555 A SG CYS 185 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? covale ? covale1 A NZ LYS 304 A LYS 305 1_555 B C15 RET . A RET 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? covale ? covale2 A SG CYS 335 A CYS 336 1_555 C C1 PLM . A PLM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.863 ? covale ? covale3 A SG CYS 336 A CYS 337 1_555 D C1 PLM . A PLM 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 324 n n C1 C6 RET sing 325 n n C1 C16 RET sing 326 n n C1 C17 RET sing 327 n n C2 C3 RET sing 328 n n C2 H21 RET sing 329 n n C2 H22 RET sing 330 n n C3 C4 RET sing 331 n n C3 H31 RET sing 332 n n C3 H32 RET sing 333 n n C4 C5 RET sing 334 n n C4 H41 RET sing 335 n n C4 H42 RET sing 336 n n C5 C6 RET doub 337 n n C5 C18 RET sing 338 n n C6 C7 RET sing 339 n n C7 C8 RET doub 340 e n C7 H7 RET sing 341 n n C8 C9 RET sing 342 n n C8 H8 RET sing 343 n n C9 C10 RET doub 344 e n C9 C19 RET sing 345 n n C10 C11 RET sing 346 n n C10 H10 RET sing 347 n n C11 C12 RET doub 348 e n C11 H11 RET sing 349 n n C12 C13 RET sing 350 n n C12 H12 RET sing 351 n n C13 C14 RET doub 352 e n C13 C20 RET sing 353 n n C14 C15 RET sing 354 n n C14 H14 RET sing 355 n n C15 O1 RET doub 356 n n C15 H15 RET sing 357 n n C16 H161 RET sing 358 n n C16 H162 RET sing 359 n n C16 H163 RET sing 360 n n C17 H171 RET sing 361 n n C17 H172 RET sing 362 n n C17 H173 RET sing 363 n n C18 H181 RET sing 364 n n C18 H182 RET sing 365 n n C18 H183 RET sing 366 n n C19 H191 RET sing 367 n n C19 H192 RET sing 368 n n C19 H193 RET sing 369 n n C20 H201 RET sing 370 n n C20 H202 RET sing 371 n n C20 H203 RET sing 372 n n # _atom_sites.entry_id 2ZIY _atom_sites.fract_transf_matrix[1][1] 0.01186 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009196 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007034 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 380 305 RET RET . C 3 PLM A 1 381 336 PLM PLY . D 3 PLM A 1 382 337 PLM PLY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . B 2 42.793 5.187 12.506 1 177.44 ? C1 RET 380 A 1 HETATM 2 C C2 RET . . . B 2 41.74 5.779 11.521 1 177.44 ? C2 RET 380 A 1 HETATM 3 C C3 RET . . . B 2 42.014 7.254 11.308 1 177.44 ? C3 RET 380 A 1 HETATM 4 C C4 RET . . . B 2 41.973 8.073 12.518 1 177.44 ? C4 RET 380 A 1 HETATM 5 C C5 RET . . . B 2 42.644 7.463 13.741 1 177.44 ? C5 RET 380 A 1 HETATM 6 C C6 RET . . . B 2 43.027 6.068 13.766 1 177.44 ? C6 RET 380 A 1 HETATM 7 C C7 RET . . . B 2 43.741 5.317 14.887 1 177.44 ? C7 RET 380 A 1 HETATM 8 C C8 RET . . . B 2 44.259 6.026 15.817 1 177.44 ? C8 RET 380 A 1 HETATM 9 C C9 RET . . . B 2 45.006 5.752 17.03 1 177.44 ? C9 RET 380 A 1 HETATM 10 C C10 RET . . . B 2 45.463 6.753 17.776 1 177.44 ? C10 RET 380 A 1 HETATM 11 C C11 RET . . . B 2 46.371 6.697 18.936 1 177.44 ? C11 RET 380 A 1 HETATM 12 C C12 RET . . . B 2 46.767 7.703 19.706 1 177.44 ? C12 RET 380 A 1 HETATM 13 C C13 RET . . . B 2 46.445 9.137 19.808 1 177.44 ? C13 RET 380 A 1 HETATM 14 C C14 RET . . . B 2 46.898 9.839 20.814 1 177.44 ? C14 RET 380 A 1 HETATM 15 C C15 RET . . . B 2 46.534 11.215 20.924 1 177.44 ? C15 RET 380 A 1 HETATM 16 C C16 RET . . . B 2 42.241 3.854 12.79 1 177.44 ? C16 RET 380 A 1 HETATM 17 C C17 RET . . . B 2 44.232 5.029 11.868 1 177.44 ? C17 RET 380 A 1 HETATM 18 C C18 RET . . . B 2 42.894 8.434 14.868 1 177.44 ? C18 RET 380 A 1 HETATM 19 C C19 RET . . . B 2 45.279 4.329 17.312 1 177.44 ? C19 RET 380 A 1 HETATM 20 C C20 RET . . . B 2 45.519 9.755 18.773 1 177.44 ? C20 RET 380 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 20 #